mRNA_Ecto-sp9_F_contig972.17823.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: RING-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL22_ECTSI) HSP 1 Score: 758 bits (1956), Expect = 7.650e-263 Identity = 403/504 (79.96%), Postives = 406/504 (80.56%), Query Frame = 1
Query: 76 MVETALSSATAVPRGFHQRTSHYNINRRTNKSKMRIEEPPSRRDKHQHRLGQAGRCPRWRHRPSGSRGATLPATGGGAFWFAWPTAGPTAAAVLVATLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRE 1587
MVET+LSSATA PRGFHQ TSHYNINRRTNK+KMRIEEP SRRDKHQH LG+AGRCPRWRHRPSGSRGATLPATGGGA WFAWPTAG TAAAVLV TLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRR DLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRE
Sbjct: 1 MVETSLSSATAAPRGFHQHTSHYNINRRTNKAKMRIEEPASRRDKHQHGLGRAGRCPRWRHRPSGSRGATLPATGGGAVWFAWPTAGATAAAVLVTTLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRRPPPPTLGNQSDPAGTSSSNSGRASGTVDATTGQASSLGNGTGSAASEDNSSSNDNGFMRREDD---------------------------DLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKGGLFLATAPRLEAAFAELAALCTENLAVLGLFFLASVACGVIAAKLSLRE 477
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZZ7_9STRA) HSP 1 Score: 157 bits (396), Expect = 1.070e-36 Identity = 125/418 (29.90%), Postives = 173/418 (41.39%), Query Frame = 1
Query: 358 VATLLSCLCPAAIGL----VIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLH----NAMDE----------------GAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWS------NRSWLPGRQG--RLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDL----------------------------CAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAF 1431
VATL A++GL V+++P + HV AAFGP++L E P+ +R LV +P D C L + D G IAL++R CNFT+KV AQ A A+ V+V D+ A ++W +M G E T I IP+V VSH+TG L + +S PG +G R+R ++ GH+ + +G +E L Y+++S++LL+FSG CGL+ AL T YQR +R RA+R LK ++R L CAICL+ YEDGD L LPC+H +H +CI PWL KS CPMCK F
Sbjct: 5 VATLYVAGVVASLGLGRALVVDQPCCSKHLHVPAAFGPNILGLESPLHARQLVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGKIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLTYNSKDKGSNASTSPSAPLSRASPTSLPDRRKGLRGLWGLLSLRRVMDKQRSRIPLPLPAHPHLESLPASGLGKGRGGRFPCPLTGDGEAPTAGEVVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 422
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: Protease-associated (RING/U-box zinc finger-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBK1_9STRA) HSP 1 Score: 146 bits (369), Expect = 6.620e-33 Identity = 114/385 (29.61%), Postives = 156/385 (40.52%), Query Frame = 1
Query: 445 AAFGPDVLSAEPPVESRPLVRAKPRDGCVPLH----NAMDE----------------GAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWS------NRSWLPGRQG--RLRASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDL----------------------------CAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAF 1431
AAFGP++L E P+ +R LV +P D C L + D G IAL++R CNFT+KV AQ A A+ V+V D+ A ++W +M G E T I IP+V VSH+TG L + +S PG +G R+R ++ GH+ + +G +E L Y+++S++LL+FSG CGL+ AL T YQR +R RA+R LK ++R L CAICL+ YEDGD L LPC+H +H +CI PWL KS CPMCK F
Sbjct: 10 AAFGPNILGLESPLHARELVMVEPEDACSDLFPRRASYQDSFFSSSSPSSLSAPSLRGRIALIKRNGCNFTEKVWRAQQAEAAGVIVYDSAARERWGTIMSGVEEWTSRITIPSVFVSHSTGLSLRNAVAQSERQSSGPGFEGAARVRVTLNDTGHVRAKTKQIGPIETLATYVVVSLVLLSFSGCCGLLLALCVTCYQRAFRHRALRGLKVEKYQRKKVSQQPLLAYNSKDKGSSASTSPSALLSRASPTSLPDRRKGLRGLWGLLSLRRVINKQRSRIPLPLPAHPRLESVPASGLGKARGGRSPCPLTGDGEAPTACEGVGASKDSWSEEEEQTTCAICLDEYEDGDLLRFLPCQHRYHDKCILPWLLEKSEACPMCKRPCF 394
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: Hypothetical (protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLQ5_9STRA) HSP 1 Score: 117 bits (292), Expect = 2.310e-23 Identity = 105/394 (26.65%), Postives = 150/394 (38.07%), Query Frame = 1
Query: 370 LSCLCPAAIGLVIE-EPFQAT--FDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGC-----------VPLHN-AMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT-PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRL---------------------RASVGAAGHIVMAARPVGALEMLGIYLLLSVLLLAFSGVCGLVFALGFTWYQRGYRTRAMRKLKSFTFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGKG 1440
LS L GLV+E P A F HV AAFG V + LV A+P+ GC P+ +++G L++RG CNFT KV+ AQ GA+A ++ D P D+W + M + + IP++ VS+ TG+RLW + + G G + R SV A G+++++ + V LE IY+++S+ LL S L ALG WY + R RA+ L F + C+ICL+ Y G++L LPC H FH +CI PWL +S CP+CK A G
Sbjct: 51 LSGLTGCCEGLVLELSPGAAVEQFSHVPAAFG-----LHHDVTNLRLVPAEPKHGCECASGECLGRPAPVSPFGLEDGFALLIQRGQCNFTDKVIWAQHRGAAAAIICDDQPRDDRWEVTMSSQDQTPVPVSIPSIFVSYRTGQRLWQ-AAQIHGTGGGMTQRWRLLLSGVGFTAAGMRFPRVSVNATGNVMVSMQLVRPLETFIIYVVVSLALLTLSACLWLSLALGLAWYTQLQRRRALMALHRFKY-------------------------------------------------------------DPSTTVAPPATPYTSPSASSHSEKRSPVLCRDTTCSICLDDYASGETLRALPCGHVFHDRCITPWLERRSVDCPLCKQPALPAG 377
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: PA (domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y6L8_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.390e-17 Identity = 67/192 (34.90%), Postives = 101/192 (52.60%), Query Frame = 1
Query: 352 VLVATLLSCLCPAAIGLVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMDEGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT---PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGRQGRLRASVGAAGHIVMAARPVG----ALEMLGIYLLLSVLLLA 906
++V +LL+ LC A LVIE P A H+ A FG V +++ + A P C PL N + G IALV+RG CNF+ KVL+AQ A A AV+V D + W + M D N+ + IP+V VSH +G+RL + + L ++ + G I+ A P +LE +Y +L+++ +A
Sbjct: 5 LVVLSLLTILCSA---LVIERPCCAKLRHIHARFGRRVTNSDEYTRLE-VATAVPIQSCAPLRNDL-HGKIALVKRGGCNFSYKVLNAQRAHAKAVIVYDDYPRQRNESWAIRMVPDHTNSSSVFIPSVFVSHESGDRLLATIDIMASVNETLLVTLNSTGEILPLATPAAVYQESLETSLMYFVLAIVCIA 191
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGU0_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 2.050e-11 Identity = 54/134 (40.30%), Postives = 62/134 (46.27%), Query Frame = 1
Query: 412 EPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTP-----------------ATDKWLMVMYGDPENTQGIDIPAVLVSHATGERL 759
+P HV AAFG DV V+ L+ A P D C PL NA G +ALV RG CNFT+KVL AQ GA AV+V DT W ++M G T I IPAV VS T L
Sbjct: 15 DPAYELHWHVPAAFGSDVR-----VDKERLILASPADACTPLSNAHKLAGNVALVTRGGCNFTEKVLQAQRCGAKAVIVGDTSNDADCPCAXXXXXXXXXXXXXWAVIMSGSAAETAPITIPAVFVSAPTAALL 143
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: Hypothetical (protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R701_DUNTE) HSP 1 Score: 70.1 bits (170), Expect = 1.150e-10 Identity = 25/51 (49.02%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1285 DLCAICLETYEDGDSLTGLPCRHSFHTQCIRPWLSGKSALCPMCKSEAFGK 1437
+ CA+C++ YE G+++ LPC+H+FH QC+R WLS S LCP+CK+ G+
Sbjct: 63 ETCAVCIQEYEPGEAIMHLPCKHAFHDQCVRSWLSTYSKLCPVCKASVTGE 113
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: Serine (protease n=4 Tax=Luteibacter TaxID=242605 RepID=A0A7X5QVG8_9GAMM) HSP 1 Score: 77.0 bits (188), Expect = 1.360e-10 Identity = 55/141 (39.01%), Postives = 78/141 (55.32%), Query Frame = 1
Query: 430 FDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDT-PATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGR--QGRLRASVGAAGHIVMA 840
+++ AAFGP SA + + R P DGC L NA + G +AL++RGTC+FT K L+AQ AGASAV++ + PA + G P + ++IP +LVS A G L +N S L G QG + A G ++ A
Sbjct: 261 YEYAQAAFGPVATSAN---FAGSVARGVPNDGCAALTNAAEVAGKVALIDRGTCDFTVKALNAQAAGASAVLLANNQPAA----VTPGGTPASP--VNIPVILVSQADGNTLKANLSGLTGAVAQGTGLSGTNADGVLIYA 392
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: T-complex (protein 1 subunit alpha n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W270_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.990e-10 Identity = 48/133 (36.09%), Postives = 63/133 (47.37%), Query Frame = 1
Query: 400 LVIEEPFQATFDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-------------EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERL 759
LV+ P T H+ F D L P ++ LV P C PL N IAL++RG CNF KV+HAQ AGA AVV+ D+ ++M D EN + IPAV +S+ GE+L
Sbjct: 823 LVLNSPCCQTITHLTGEFTSDKLLESNPFDNYELVAVNPLIACQPLTNGYHTKNYTSNTSALFLRNKIALIQRGECNFVTKVIHAQEAGAKAVVMMDSQIRATDYIIMQRD-ENASKVHIPAVFISYKDGEKL 954
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Match: hypothetical (protein n=1 Tax=Luteibacter sp. EIF3 TaxID=2780091 RepID=UPI002026C47F) HSP 1 Score: 74.3 bits (181), Expect = 5.250e-10 Identity = 52/141 (36.88%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 430 FDHVAAAFGPDVLSAEPPVESRPLVRAKPRDGCVPLHNAMD-EGAIALVERGTCNFTQKVLHAQLAGASAVVVTDTPATDKWLMVMYGDPENTQGIDIPAVLVSHATGERLWSNRSWLPGR--QGRLRASVGAAGHIVMAA 843
+ + AAFGP S+ + +V+A+P DGC + N G IAL++RGTC+FT K L+AQ AGASAV++ + A + G P + ++IP + VS G +L +N S L G QG A A G++ + A
Sbjct: 55 YGYAQAAFGPTATSSN---FTGSVVQAQPNDGCNAITNGSALAGKIALIDRGTCDFTVKTLNAQAAGASAVLIANNQAG---AITPGGTPASP--VNIPVIAVSQVDGNKLKANLSGLTGAVGQGTGLAGADAQGNVQLYA 187 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig972.17823.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig972.17823.1 >prot_Ecto-sp9_F_contig972.17823.1 ID=prot_Ecto-sp9_F_contig972.17823.1|Name=mRNA_Ecto-sp9_F_contig972.17823.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=505bp MVETALSSATAVPRGFHQRTSHYNINRRTNKSKMRIEEPPSRRDKHQHRLback to top mRNA from alignment at Ecto-sp9_F_contig972:3450..13587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig972.17823.1 ID=mRNA_Ecto-sp9_F_contig972.17823.1|Name=mRNA_Ecto-sp9_F_contig972.17823.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=10138bp|location=Sequence derived from alignment at Ecto-sp9_F_contig972:3450..13587+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig972:3450..13587+ >mRNA_Ecto-sp9_F_contig972.17823.1 ID=mRNA_Ecto-sp9_F_contig972.17823.1|Name=mRNA_Ecto-sp9_F_contig972.17823.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3030bp|location=Sequence derived from alignment at Ecto-sp9_F_contig972:3450..13587+ (Ectocarpus species9 EcSCA_722f female)back to top |