mRNA_Ecto-sp9_F_contig9690.17794.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: Methenyltetrahydrofolate (cyclohydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC07_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.570e-62 Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1
Query: 1 VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATRAAXXXXXXXXXXXXXXXX--LPVPPPDSSSDKVAAPTPDTASS 387
VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAK+VAAKITPVPGGVGPMTIAMLLRNTVNGATRAAXXXXXXXXXXXXXX LPVPPPDSSSDKVAAPTPDTASS
Sbjct: 329 VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKQVAAKITPVPGGVGPMTIAMLLRNTVNGATRAAXXXXXXXXXXXXXXSTPNLPVPPPDSSSDKVAAPTPDTASS 459
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: THF_DHG_CYH_C (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482URR7_9ARCH) HSP 1 Score: 143 bits (360), Expect = 3.390e-41 Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1
Query: 1 VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATRAA 270
VR ADIV+ A GR EMV+ W+KPGA V+DVGINSVDDAT K+GYRLVGDV F +EVA+KITPVPGGVGPMTIAMLLRNTVNGA RAA
Sbjct: 56 VRRADIVIAAVGRPEMVRGSWVKPGAVVVDVGINSVDDATDKRGYRLVGDVCFSECREVASKITPVPGGVGPMTIAMLLRNTVNGARRAA 145
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: Bifunctional (5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Z9ZJ22_9CHLR) HSP 1 Score: 139 bits (351), Expect = 1.350e-40 Identity = 68/89 (76.40%), Postives = 77/89 (86.52%), Query Frame = 1
Query: 4 READIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATRAA 270
R ADI++ A GR ++VKADWIKPGAA+IDVGIN VDD T KKGYR+VGDVDF+AAKEVA ITPVPGGVGPMTIAMLL+NT+ A RAA
Sbjct: 9 RRADILIAAVGRPKIVKADWIKPGAAIIDVGINRVDDPTAKKGYRIVGDVDFEAAKEVAGYITPVPGGVGPMTIAMLLKNTLTSAKRAA 97
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: Bifunctional (protein FolD n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V2RXS7_9CHLR) HSP 1 Score: 145 bits (366), Expect = 1.800e-40 Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 1
Query: 4 READIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATRA 267
R ADI++ A GRAEMVK DWIKPGAAVIDVG+N+VDD T KKGYRLVGDVDF +AKEVA ITPVPGGVGPMTIAMLLRNT++GA RA
Sbjct: 203 RNADILIAAVGRAEMVKGDWIKPGAAVIDVGVNAVDDPTAKKGYRLVGDVDFDSAKEVAGMITPVPGGVGPMTIAMLLRNTMDGAKRA 290
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: Bifunctional (protein FolD n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A3M1IS26_9CHLR) HSP 1 Score: 143 bits (361), Expect = 1.010e-39 Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 1 VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATRA 267
VR+ADI++ A GRAEMV+ DW+KPGA +IDVG+N+VDDAT KKGYRLVGDV F+ AKEVA+KITPVPGGVGPMTIAMLLRNT++GA A
Sbjct: 202 VRQADILIAAVGRAEMVRGDWVKPGAVIIDVGVNAVDDATKKKGYRLVGDVAFEEAKEVASKITPVPGGVGPMTIAMLLRNTLDGAKHA 290
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: Bifunctional (methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=UPI001A088AAE) HSP 1 Score: 140 bits (352), Expect = 1.030e-39 Identity = 69/89 (77.53%), Postives = 75/89 (84.27%), Query Frame = 1
Query: 4 READIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATRAA 270
R ADI++ A GR EMVKADW+KPGAAVIDVGIN VDD T K+GYRLVGDVDF+A KEV ITPVPGGVGPMTIAMLLRNT+ A RAA
Sbjct: 89 RRADILIAAVGRPEMVKADWVKPGAAVIDVGINRVDDPTRKRGYRLVGDVDFEAVKEVVGYITPVPGGVGPMTIAMLLRNTLTSAKRAA 177
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: Methenyltetrahydrofolate (cyclohydrolase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2U6_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.320e-39 Identity = 71/90 (78.89%), Postives = 80/90 (88.89%), Query Frame = 1
Query: 1 VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATRAA 270
V++ADIVV A GRA+MVK DW+KPGA VIDVGINS+DDA+ K GYRLVGDVDF+ AK VA+KITPVPGGVGPMTIAMLLRNT+NGA R A
Sbjct: 286 VKQADIVVAAVGRAQMVKGDWLKPGAVVIDVGINSIDDASKKSGYRLVGDVDFEEAKMVASKITPVPGGVGPMTIAMLLRNTLNGAKRLA 375
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: THF_DHG_CYH_C (domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2IVH6_9CHLO) HSP 1 Score: 138 bits (348), Expect = 2.610e-39 Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 1
Query: 1 VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATR 264
VR ADIV+ A GRAEMVK DWIKPGA VIDVGIN+VDDA K+GYRLVGDVDF A VAA ITPVPGGVGPMTIAMLL+NT+ GA R
Sbjct: 70 VRGADIVIAACGRAEMVKGDWIKPGAVVIDVGINAVDDAAAKRGYRLVGDVDFAGASTVAAAITPVPGGVGPMTIAMLLQNTLEGAKR 157
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: Methenyltetrahydrofolate (cyclohydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNW7_9STRA) HSP 1 Score: 143 bits (360), Expect = 4.970e-39 Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 1
Query: 1 VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATR 264
VR ADIVV A G+AE+VK DWIKPGA VIDVGINSVDDAT K GYR+VGDVDF AAK+ A+KITPVPGGVGPMT+AML+RNTV+GA R
Sbjct: 217 VRAADIVVAAVGKAELVKGDWIKPGAVVIDVGINSVDDATKKAGYRMVGDVDFAAAKQRASKITPVPGGVGPMTVAMLMRNTVSGAAR 304
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Match: Methenyltetrahydrofolate (cyclohydrolase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRX9_9STRA) HSP 1 Score: 142 bits (357), Expect = 6.550e-39 Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = 1
Query: 4 READIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDVDFKAAKEVAAKITPVPGGVGPMTIAMLLRNTVNGATR 264
+ ADIVV A GRAEMVK DWIKPGA VIDVGINSVDD T+KKGYRLVGDVDF K VA KITPVPGGVGPMTIAMLLRNT+ GA R
Sbjct: 221 KRADIVVAAVGRAEMVKPDWIKPGAVVIDVGINSVDDPTSKKGYRLVGDVDFAGCKAVAGKITPVPGGVGPMTIAMLLRNTLQGAKR 307 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9690.17794.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9690.17794.1 >prot_Ecto-sp9_F_contig9690.17794.1 ID=prot_Ecto-sp9_F_contig9690.17794.1|Name=mRNA_Ecto-sp9_F_contig9690.17794.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=130bp VREADIVVCAAGRAEMVKADWIKPGAAVIDVGINSVDDATTKKGYRLVGDback to top mRNA from alignment at Ecto-sp9_F_contig9690:3790..5058- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9690.17794.1 ID=mRNA_Ecto-sp9_F_contig9690.17794.1|Name=mRNA_Ecto-sp9_F_contig9690.17794.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1269bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9690:3790..5058- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9690:3790..5058- >mRNA_Ecto-sp9_F_contig9690.17794.1 ID=mRNA_Ecto-sp9_F_contig9690.17794.1|Name=mRNA_Ecto-sp9_F_contig9690.17794.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9690:3790..5058- (Ectocarpus species9 EcSCA_722f female)back to top |