mRNA_Ecto-sp9_F_contig968.17782.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig968.17782.1
Unique NamemRNA_Ecto-sp9_F_contig968.17782.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig968.17782.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig968contigEcto-sp9_F_contig968:18264..19063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size800
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig968.17782.1prot_Ecto-sp9_F_contig968.17782.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig968 18370..18912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.799845-UTR-Ecto-sp9_F_contig968:18263..183691622931055.799845-UTR-Ecto-sp9_F_contig968:18263..18369Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig968 18264..18369 +
1692279012.0304716-UTR-Ecto-sp9_F_contig968:18263..183691692279012.0304716-UTR-Ecto-sp9_F_contig968:18263..18369Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig968 18264..18369 +
1622931055.8428197-UTR-Ecto-sp9_F_contig968:18912..190631622931055.8428197-UTR-Ecto-sp9_F_contig968:18912..19063Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig968 18913..19063 +
1692279012.0565174-UTR-Ecto-sp9_F_contig968:18912..190631692279012.0565174-UTR-Ecto-sp9_F_contig968:18912..19063Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig968 18913..19063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.8208673-CDS-Ecto-sp9_F_contig968:18369..189121622931055.8208673-CDS-Ecto-sp9_F_contig968:18369..18912Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 18370..18912 +
1692279012.0413222-CDS-Ecto-sp9_F_contig968:18369..189121692279012.0413222-CDS-Ecto-sp9_F_contig968:18369..18912Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 18370..18912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig968.17782.1

>prot_Ecto-sp9_F_contig968.17782.1 ID=prot_Ecto-sp9_F_contig968.17782.1|Name=mRNA_Ecto-sp9_F_contig968.17782.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=181bp
MVVGESEEIRTFPGLVSFQEGVDDDSRRFGWLTEYDAVRVRFSEECVPWL
IDRIRCRRCRAWSRAWQSSGFWSHLVSCVVGSSVDRRKASGCQGWMLKAV
GRLLSVCVCILEPPLSAMYFWVEVESQACKSCRTGTIEEGSCERGEGFGF
LLAGRPRLATCVQSVNNTSSVSPEKRCGVS*
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mRNA from alignment at Ecto-sp9_F_contig968:18264..19063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig968.17782.1 ID=mRNA_Ecto-sp9_F_contig968.17782.1|Name=mRNA_Ecto-sp9_F_contig968.17782.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=800bp|location=Sequence derived from alignment at Ecto-sp9_F_contig968:18264..19063+ (Ectocarpus species9 EcSCA_722f female)
TGGCTGTCTGGAGGGATCATTACGGAGGGTATCCATCTGTACAGCCCGGG
TTGATCCTTCTTCTTGCTCTCTTCGAGTTTTTCGTTGCACTAGAGAAGGC
TTCTACATGGTGGTGGGTGAGAGTGAGGAGATACGTACTTTTCCTGGACT
GGTTAGTTTTCAGGAAGGGGTGGATGATGATTCGCGTCGGTTCGGCTGGC
TGACCGAGTACGACGCTGTCCGCGTGAGATTTTCTGAAGAATGCGTTCCG
TGGCTGATCGATCGCATTCGTTGTAGGCGTTGTCGTGCATGGAGTCGTGC
GTGGCAAAGTAGCGGCTTTTGGTCGCATCTTGTGAGCTGTGTTGTCGGCT
CTTCTGTAGATAGAAGGAAGGCATCTGGATGCCAAGGATGGATGTTGAAA
GCCGTCGGTCGGTTGTTGAGCGTTTGCGTTTGTATTCTCGAGCCGCCATT
GTCGGCCATGTATTTTTGGGTTGAAGTCGAATCACAAGCGTGCAAGAGTT
GTCGCACGGGTACCATAGAGGAGGGGAGCTGCGAGAGAGGAGAGGGGTTT
GGGTTCCTGTTGGCAGGGCGGCCACGACTGGCTACGTGCGTGCAAAGTGT
AAATAATACGAGTAGTGTTTCGCCAGAGAAAAGATGCGGTGTAAGTTAAC
GTGACAAGTGTCACGTTCTCTTCGCAACGTTATTTTCGGTGCTGGCTGGA
TGGTGTCTATGACGGGTGGTTTTCGACAACCCCAGGCGGTATTTTAGGAA
GAAGTTGTGTAGGGCTCGCCGAAAGTGCGCGTGTTAAAACCATACCGGTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig968:18264..19063+

>mRNA_Ecto-sp9_F_contig968.17782.1 ID=mRNA_Ecto-sp9_F_contig968.17782.1|Name=mRNA_Ecto-sp9_F_contig968.17782.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1086bp|location=Sequence derived from alignment at Ecto-sp9_F_contig968:18264..19063+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGTGGGTGAGAGTGAGGAGATACGTACTTTTCCTGGACTGGTTAG
TTTTCAGGAAGGGGTGGATGATGATTCGCGTCGGTTCGGCTGGCTGACCG
AGTACGACGCTGTCCGCGTGAGATTTTCTGAAGAATGCGTTCCGTGGCTG
ATCGATCGCATTCGTTGTAGGCGTTGTCGTGCATGGAGTCGTGCGTGGCA
AAGTAGCGGCTTTTGGTCGCATCTTGTGAGCTGTGTTGTCGGCTCTTCTG
TAGATAGAAGGAAGGCATCTGGATGCCAAGGATGGATGTTGAAAGCCGTC
GGTCGGTTGTTGAGCGTTTGCGTTTGTATTCTCGAGCCGCCATTGTCGGC
CATGTATTTTTGGGTTGAAGTCGAATCACAAGCGTGCAAGAGTTGTCGCA
CGGGTACCATAGAGGAGGGGAGCTGCGAGAGAGGAGAGGGGTTTGGGTTC
CTGTTGGCAGGGCGGCCACGACTGGCTACGTGCGTGCAAAGTGTAAATAA
TACGAGTAGTGTTTCGCCAGAGAAAAGATGCGGTGTAAGTTAAATGGTGG
TGGGTGAGAGTGAGGAGATACGTACTTTTCCTGGACTGGTTAGTTTTCAG
GAAGGGGTGGATGATGATTCGCGTCGGTTCGGCTGGCTGACCGAGTACGA
CGCTGTCCGCGTGAGATTTTCTGAAGAATGCGTTCCGTGGCTGATCGATC
GCATTCGTTGTAGGCGTTGTCGTGCATGGAGTCGTGCGTGGCAAAGTAGC
GGCTTTTGGTCGCATCTTGTGAGCTGTGTTGTCGGCTCTTCTGTAGATAG
AAGGAAGGCATCTGGATGCCAAGGATGGATGTTGAAAGCCGTCGGTCGGT
TGTTGAGCGTTTGCGTTTGTATTCTCGAGCCGCCATTGTCGGCCATGTAT
TTTTGGGTTGAAGTCGAATCACAAGCGTGCAAGAGTTGTCGCACGGGTAC
CATAGAGGAGGGGAGCTGCGAGAGAGGAGAGGGGTTTGGGTTCCTGTTGG
CAGGGCGGCCACGACTGGCTACGTGCGTGCAAAGTGTAAATAATACGAGT
AGTGTTTCGCCAGAGAAAAGATGCGGTGTAAGTTAA
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