mRNA_Ecto-sp9_F_contig968.17780.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig968.17780.1
Unique NamemRNA_Ecto-sp9_F_contig968.17780.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Isochorismatase (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG0_ECTSI)

HSP 1 Score: 522 bits (1345), Expect = 1.840e-182
Identity = 267/272 (98.16%), Postives = 267/272 (98.16%), Query Frame = 1 
Query:    1 MRIGDLLLFAVSARGFFLSVTPSAHYSSTIWKRHGGREKNSPLLLLQPPPSARASLDIQVVEMAAATASRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL 816
            MRIGDLLLFAVSARGFFLSVTPSAHYSSTIWKRHGGREKNSPLLLLQ PPSARAS DI VVEMA ATASRRLGKI PSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL
Sbjct:    1 MRIGDLLLFAVSARGFFLSVTPSAHYSSTIWKRHGGREKNSPLLLLQLPPSARASSDIPVVEMAVATASRRLGKIFPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL 272
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BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Isochorismatase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX0_9PHAE)

HSP 1 Score: 409 bits (1050), Expect = 1.050e-138
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 1 
Query:  187 MAAATASRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL 816
            MAAATASRRLGKI+PSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVG GPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGY+VHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL
Sbjct:    1 MAAATASRRLGKILPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGNGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYEVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTMSTL 210
[Close]
BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Isochorismatase (n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6T6_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.310e-62
Identity = 111/212 (52.36%), Postives = 149/212 (70.28%), Query Frame = 1 
Query:  154 ARASLDIQV--VEMAAATASRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAE 783
            AR S +++     M A+  +R +GK+ P +T F  CDVQERFRD+I + P VI TAKFM  V QEL++P + +EQYPKA   TVPEL          +P FEKK+FSM T E++ +++  P+RK  VLFGIEAHVCV QT LDLL+ GY VH++ DGVSSQK HDRAVAL+RM+++GAFLT+AE + F L+ TA + +F+ +S L+K+   E
Sbjct:    7 ARKSTELRTYFATMTASNVARAIGKLQPKTTTFLLCDVQERFRDVIWHFPQVIRTAKFMTAVGQELQIPTLASEQYPKAFGATVPELKAAAV--DYCIPTFEKKMFSMLTDELKAQMQCEPERKTVVLFGIEAHVCVQQTALDLLEQGYAVHILVDGVSSQKAHDRAVALRRMEKAGAFLTTAESLVFMLMQTASHPQFKTISFLIKEHAGE 216
[Close]
BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Hypothetical (protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W3H3_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.680e-58
Identity = 107/192 (55.73%), Postives = 142/192 (73.96%), Query Frame = 1 
Query:  208 RRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKD-AVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNA 780
            R LG+I  SSTVFF CDVQERFR+ IH MP VI T+KF+++ S+ LE+PCIVTEQYPK LLHTV E++V KG     +P+FEK  F+M   +VE+ +  +   KD AVLFGIE HVCV QT LDLL  G++VH+V DG+SS KP +R VALQR+Q +GA LT++E V F+++ +   ++F+ +S LVK+ NA
Sbjct:   25 RNLGRISRSSTVFFLCDVQERFREHIHMMPHVIQTSKFLVNASRVLEIPCIVTEQYPKGLLHTVSEIDV-KG-----LPVFEKTDFTMLVPQVEKCIADMGTPKDTAVLFGIEGHVCVQQTALDLLAKGWNVHLVADGISSSKPLNRTVALQRLQDAGALLTTSEAVVFEIMRSTSCKEFKTISKLVKENNA 210
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BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TC81_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.230e-57
Identity = 98/191 (51.31%), Postives = 134/191 (70.16%), Query Frame = 1 
Query:  202 ASRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLP--DRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVK 768
            A R +GK+ P S+V   CDVQERFR LIHNM  VI+T KFM  V++EL++PC+ T+QY K    T+P+          ++P+FEKKLFSMCT+E  + L  L   ++   ++ GIEAHVC+ QTCLDLL+ G+DVH++ DGVSSQ+  DR +AL+RM+QSGA++T+ +   F LL  A+N  F+AVS LVK
Sbjct:    5 ARRAVGKLCPKSSVLLVCDVQERFRPLIHNMETVINTTKFMTAVAKELQIPCVATQQYTKVFGPTIPDAIADPNDIGTSIPVFEKKLFSMCTEECSKHLASLSSSEKTSYLIVGIEAHVCLQQTCLDLLEQGHDVHIIADGVSSQQKIDRDIALKRMEQSGAWITTCQSAAFMLLGGADNANFKAVSKLVK 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Isochorismatase (domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WY66_9CHLO)

HSP 1 Score: 198 bits (503), Expect = 7.990e-57
Identity = 103/201 (51.24%), Postives = 142/201 (70.65%), Query Frame = 1 
Query:  205 SRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGINTFSTM 807
            S R+GK++PS++  F CDVQE+FR +I + PAVI TA+ M+  +  L++P I TEQYPKAL  T  EL     P     PI  K LFSM T EVEE L+K+P+ K  +L GIEAHVCV QT LDL++ G++VH+V DGVSSQ+ HDRAV + RM Q+GAF+T++E + FQ++  A+++ F+A+S LVK+  AE I   S++
Sbjct:    4 SSRIGKLIPSTSALFVCDVQEKFRPVISHFPAVIDTARRMIRGANTLQLPVIATEQYPKALGSTCSELVEVLTPTS---PIVPKTLFSMLTPEVEEALQKMPNVKQVMLLGIEAHVCVLQTTLDLMERGFEVHLVVDGVSSQRLHDRAVGIHRMSQAGAFITTSEMILFQMMKDAKHKDFKAISALVKESQAEPIPFTSSL 201
[Close]
BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Isochorismatase (domain-containing protein 1 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CFM3_SYMMI)

HSP 1 Score: 201 bits (512), Expect = 1.250e-56
Identity = 105/188 (55.85%), Postives = 133/188 (70.74%), Query Frame = 1 
Query:  205 SRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVK 768
            S  LG++ P+STVF  CDVQERFRD+I  MP VI+ AK M+D  + L +P I+TEQYPKAL HTVPEL+V K        +FEK  FSMCT E    L  L D+KDAV+FG+E HVCV QT  DLL  G+ VHV+ DGVSSQ+  DR VALQR++Q+G F+T+AE   F+LL + +  +F+AVS +VK
Sbjct:    4 SPSLGRLEPASTVFLLCDVQERFRDVIDRMPEVIAAAKAMMDAGEALSIPIIITEQYPKALGHTVPELDVSKAN------VFEKTKFSMCTDEFLAYLASL-DKKDAVIFGVETHVCVQQTAFDLLSKGFQVHVLADGVSSQRAPDREVALQRLRQAGCFVTTAESALFELLRSKDAPQFKAVSGVVK 184
[Close]
BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Isochorismatase (domain-containing 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGK8_9CHLO)

HSP 1 Score: 195 bits (495), Expect = 3.160e-55
Identity = 108/219 (49.32%), Postives = 140/219 (63.93%), Query Frame = 1 
Query:  133 LLQPPPSARASLDIQVVEMAAATASRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKKRNAEGI 789
            LL  P +A A+    V  MAAA   R +G++ P  T    CDVQERFR +I   PAV+ T++ ML  +  L++P IVTEQYPKAL +TV EL     P     P+  K LFSMCT EV   L+ LP  K  ++ GIE HVCV QTCLDLL+ GY+VH+V DGVSSQ+  DR+VALQR+ Q+GAFL ++E V FQ++    +  F+AVS L K+   E +
Sbjct:   14 LLGQPATAIAARGTTVRAMAAAADGRSVGRLPPDETALLVCDVQERFRPVISGFPAVVDTSRRMLRAASALQLPVIVTEQYPKALGNTVEELQPHIPPGS---PVVAKTLFSMCTDEVNAALEGLPAVKKVLIVGIETHVCVLQTCLDLLERGYEVHIVVDGVSSQRLGDRSVALQRLAQAGAFLATSEMVMFQMMRNTGHPAFKAVSALCKEERPEQL 229
[Close]
BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Hypothetical (protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZR19_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.930e-54
Identity = 102/195 (52.31%), Postives = 135/195 (69.23%), Query Frame = 1 
Query:  187 MAAATASRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNLVKK 771
            MA    ++RLGK+   ++VF  CDVQERFR LIH    V  T+  M+  S+ + +PC+VTEQYPKAL HT  E+  G     I V  FEK LFSM T EVE+ LK L +R  AV+FG+E HVCV QT LDLL+ G+DVHV+ DGVSSQ+  DR+VA++R++ +GAFLT++E + F L+  +  E F+AVS LVK+
Sbjct:    1 MALPQTAKRLGKLSMENSVFLVCDVQERFRTLIHKFDHVALTSSIMVKASKIMGIPCVVTEQYPKALGHTCSEVLAGDTSPLIKV--FEKSLFSMMTPEVEQHLKDL-NRNSAVIFGVETHVCVQQTALDLLEKGWDVHVIVDGVSSQREFDRSVAIERLKAAGAFLTTSESLLFGLMKDSNYENFKAVSQLVKE 192
[Close]
BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Match: Hypothetical (protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1H2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 6.300e-54
Identity = 100/208 (48.08%), Postives = 139/208 (66.83%), Query Frame = 1 
Query:  157 RASLDIQVVEMAAATASRRLGKIVPSSTVFFACDVQERFRDLIHNMPAVISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVP----IFEKKLFSMCTKEVEEELKK--LPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRAVSNL 762
            R S+    ++MAA T   R+GK+ PS+T FF CD+QERF+ L++N   +IST++++  ++  L +P I ++QY K   +T+PE       D  N+     IFEKKLFSM T EVE EL+K     R   VLFGIEAHVCV QTCLDLL+ G DVH++ D VSSQ+P DR +AL RM+ +GA LT+A+ + F L+ +AE+E F+ +S L
Sbjct:   37 RQSIRSSHLQMAAVTKVSRIGKLTPSTTTFFLCDIQERFKPLMYNSETIISTSRYLTSIASTLSIPLIASQQYTKVFGNTIPECFANGQVDVDNLKAKNRIFEKKLFSMMTTEVESELEKEYFQGRDSVVLFGIEAHVCVQQTCLDLLEQGKDVHIIVDCVSSQQPFDREIALTRMESAGAHLTTAQSLAFMLMQSAEHEHFKVISKL 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig968.17780.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Isochorismatase1.840e-18298.16domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Isochorismatase1.050e-13898.57domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Isochorismatase1.310e-6252.36n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID... [more]
Hypothetical2.680e-5855.73protein n=1 Tax=labyrinthulid quahog parasite QPX ... [more]
Hypothetical1.230e-5751.31protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Isochorismatase7.990e-5751.24domain-containing protein n=1 Tax=Chlamydomonas eu... [more]
Isochorismatase1.250e-5655.85domain-containing protein 1 n=1 Tax=Symbiodinium m... [more]
Isochorismatase3.160e-5549.32domain-containing 2 n=1 Tax=Micractinium conductri... [more]
Hypothetical2.930e-5452.31protein n=1 Tax=Aplanochytrium stocchinoi TaxID=21... [more]
Hypothetical6.300e-5448.08protein n=2 Tax=Chaetoceros debilis TaxID=122233 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig968contigEcto-sp9_F_contig968:5152..9718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score525.0
Seed ortholog evalue2.1e-146
Seed eggNOG ortholog2880.D7FJG0
Preferred nameMAR1
EggNOG free text desc.isochorismatase domain-containing protein
EggNOG OGsCOG1335@1,KOG4044@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionIsochorismatase-like
Ec32 orthologEc-14_006200.1
Exons7
Model size1646
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig968.17780.1prot_Ecto-sp9_F_contig968.17780.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig968 5152..8891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931056.0150297-CDS-Ecto-sp9_F_contig968:5151..54681622931056.0150297-CDS-Ecto-sp9_F_contig968:5151..5468Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 5152..5468 +
1692279012.142604-CDS-Ecto-sp9_F_contig968:5151..54681692279012.142604-CDS-Ecto-sp9_F_contig968:5151..5468Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 5152..5468 +
1622931056.0308642-CDS-Ecto-sp9_F_contig968:5832..58961622931056.0308642-CDS-Ecto-sp9_F_contig968:5832..5896Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 5833..5896 +
1692279012.1641672-CDS-Ecto-sp9_F_contig968:5832..58961692279012.1641672-CDS-Ecto-sp9_F_contig968:5832..5896Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 5833..5896 +
1622931056.0462735-CDS-Ecto-sp9_F_contig968:6405..64621622931056.0462735-CDS-Ecto-sp9_F_contig968:6405..6462Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 6406..6462 +
1692279012.1797707-CDS-Ecto-sp9_F_contig968:6405..64621692279012.1797707-CDS-Ecto-sp9_F_contig968:6405..6462Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 6406..6462 +
1622931056.0602324-CDS-Ecto-sp9_F_contig968:6831..69571622931056.0602324-CDS-Ecto-sp9_F_contig968:6831..6957Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 6832..6957 +
1692279012.1936603-CDS-Ecto-sp9_F_contig968:6831..69571692279012.1936603-CDS-Ecto-sp9_F_contig968:6831..6957Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 6832..6957 +
1622931056.0790973-CDS-Ecto-sp9_F_contig968:7515..75831622931056.0790973-CDS-Ecto-sp9_F_contig968:7515..7583Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 7516..7583 +
1692279012.2074935-CDS-Ecto-sp9_F_contig968:7515..75831692279012.2074935-CDS-Ecto-sp9_F_contig968:7515..7583Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 7516..7583 +
1622931056.0940046-CDS-Ecto-sp9_F_contig968:7877..79851622931056.0940046-CDS-Ecto-sp9_F_contig968:7877..7985Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 7878..7985 +
1692279012.2218974-CDS-Ecto-sp9_F_contig968:7877..79851692279012.2218974-CDS-Ecto-sp9_F_contig968:7877..7985Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 7878..7985 +
1622931056.1072357-CDS-Ecto-sp9_F_contig968:8812..88911622931056.1072357-CDS-Ecto-sp9_F_contig968:8812..8891Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 8813..8891 +
1692279012.2358966-CDS-Ecto-sp9_F_contig968:8812..88911692279012.2358966-CDS-Ecto-sp9_F_contig968:8812..8891Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig968 8813..8891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931056.1204176-UTR-Ecto-sp9_F_contig968:8891..97181622931056.1204176-UTR-Ecto-sp9_F_contig968:8891..9718Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig968 8892..9718 +
1692279012.2551076-UTR-Ecto-sp9_F_contig968:8891..97181692279012.2551076-UTR-Ecto-sp9_F_contig968:8891..9718Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig968 8892..9718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig968.17780.1

>prot_Ecto-sp9_F_contig968.17780.1 ID=prot_Ecto-sp9_F_contig968.17780.1|Name=mRNA_Ecto-sp9_F_contig968.17780.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=273bp
MRIGDLLLFAVSARGFFLSVTPSAHYSSTIWKRHGGREKNSPLLLLQPPP
SARASLDIQVVEMAAATASRRLGKIVPSSTVFFACDVQERFRDLIHNMPA
VISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIF
EKKLFSMCTKEVEEELKKLPDRKDAVLFGIEAHVCVTQTCLDLLDLGYDV
HVVCDGVSSQKPHDRAVALQRMQQSGAFLTSAEQVTFQLLHTAENEKFRA
VSNLVKKRNAEGINTFSTMSTL*
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mRNA from alignment at Ecto-sp9_F_contig968:5152..9718+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig968.17780.1 ID=mRNA_Ecto-sp9_F_contig968.17780.1|Name=mRNA_Ecto-sp9_F_contig968.17780.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4567bp|location=Sequence derived from alignment at Ecto-sp9_F_contig968:5152..9718+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGATTGGTGACCTGTTGCTCTTTGCAGTAAGTGCTCGTGGTTTTTT
CCTGAGCGTCACGCCCTCTGCACACTACAGCAGTACGATCTGGAAAAGAC
ACGGCGGCAGAGAAAAAAACTCTCCGCTGCTCCTGCTTCAGCCACCGCCC
TCGGCCAGAGCATCCTTGGACATACAAGTAGTAGAGATGGCTGCGGCAAC
GGCCTCGCGACGCCTCGGGAAAATCGTTCCCTCTAGCACTGTCTTCTTCG
CGTGCGATGTCCAGGAGCGATTCCGCGACCTCATCCACAACATGCCGGCG
GTCATCTCTACTGCAAAGTATGTACTTGGCTACGTGTAGAAGGCGGTTGG
GGCGGTGCATGTTTATTCGTTTGCATTCGTTTGTTCCGGATGGCCCTTTC
ACGGGTCAATGCATATTCGTGAGCGCGTCCTTCCCCGGCGGACAGCAGAA
CGGTATTGATGCTCAAGCGATGGCACATGCTACTAAAACACGCTGTGCCT
CGGATGTGCGATCGCGGCCCATCTTGCCGCAGATTGCTCCAGGGGTGCAA
AGTGCGGCGTAACGAGTGACTCGTGTCCATCAAGCCGTATCCTTACCAAA
CTCCAACCTCGCCTTGGTCCTTCCGCCCGAAATGTCGCATTGATGCCTTT
TGCTCCCATGATACCACCACTAATCTTGCAGGTTCATGCTGGACGTCTCG
CAAGAGCTGGAAGTGCCGTGCATCGTAACCGAGCAGTACCCGAAGGTGAC
TATCTATAACGGTTGTCAATGCACCGAAAGGTCCGGGGGGATGCACACAC
ACGCGGACCAACCCTGTCTAAAGTCTGTATGTAAGCTGAGTACTTGTACG
GTGTATTGTTGTAGTCTTGAGCCTTGTTCACGGCCCTGCTGCAGCTGTAG
CAGAACCCTAGCCAGAGAGCCCGAGGTATTGGACATGGGACGGTGATCCT
GTCATTCATCCGGATTTCGTTAAAGAACATCGATATATATCGGCACCAAC
GAATCCGAACACCCGACGAGATTCTGTTCACCGCAATCAACGCGCTCTTC
CAGGACCGGTACAGCAGGTAACCAAACGGGTTATTGTCTCGAACGGGTAG
TCGTTCTTTGACGATATGTACATTTTCTTTATCGGAAGGCGATGAAGATC
ACGGCGACCGTATGTACCTATCGTGGTGTGTACATCAGTGACCTCACCCA
ATCTTCAATTCCTTGCTGTTTGCCCCGTTTCGTCTTCGTTTTTCGTTTCC
GAAGGCGCTGTTGCACACGGTCCCAGAGCTCAATGTCGGCAAAGGCCCCG
ACCAAATCAATGTGAGAACAAGATGGCTTTGATCCTATTTCTTGTTCGGG
CGGCTGCTTGTGCCGTTTCTTTTCGTGGCGATAGCTTCTCCAACCGGGCT
CTAGTAGGCATTCGTACGAATATTTTGGGGAGATTTTGACGCACTCATCA
TGCGGGAACTATTGAGCCTCGGGCACTTTGGATGGGTTTGACGTGTAAGC
CCAGACCGCTTGCTTTTGTGATGCCGTACCCTTTCGGTCGTGCTCCTACC
CCGACTGTTCGTTTTTTTTTTGGTGGCGTTGTTTCCGTGTTCCTTTTGTC
CATGCCGTTCAACGCGCTGTCACATTACCCTTGCCACGTACACCAACTTC
TGCCGCGTTCTCTTGTGTGTTTTGCGACAGGTCCCAATCTTTGAGAAGAA
GTTGTTTTCAATGTGCACCAAAGAGGTCGAGGAAGAACTGAAGAAATTAC
CGGACAGGAAAGACGCCGTGCTCTTTGGCATCGAGGCCCACGTGTGTGTC
ACCCAGGTATGAATGCAAGCGCGCGTCCACCGCTGTGTGTTTCGTGTCTT
TGGCCTGTCTAGCAATAGCATGGCCTGAAGACCCACAACCCTGTTTTGTG
CCTGTTTTGTGGCAGGGTAAGCTTTCGCCAAGCCGCAGTTGGTCTGGTTC
TTGGTTCCCAGTCGTAGCGCGGCTGTTACCCCACGGTCAGAGCTTGTTGG
GGATTTGTTTAGCCGTCGTTGCATACAGTGGCTGCTACTGCTGTTTGCCG
AACGAACTTGGCCCTGGCGGTCTCTACAGCGATGGCCTGCTTCGAAGAAT
CGTAACTACCGTGCAAGGGATGTTTCGAAAAAATTGGCGGGCGGCACCGG
TGTATGCATGGTCACCGGAGCGTGCTTGCGTACATGGCCCAAAGTCTACC
ATCTCCTCTTCTTCAGCTGAGGAATTTGTTGTACGCGTTCCAAGGACTTG
TCCACCATGCAATACCTCTCTTGCCCCTTCAATGCCACTGCGAACATGGA
GTTTATTATTCAAGACAAAGTTCTGACGTTTTCAATTCAATGCAATGACC
ACCGTTCTTTGCAGACGTGCCTGGATTTGCTGGACCTCGGCTACGACGTC
CACGTTGTCTGCGATGGCGTGTCAAGCCAAAAGTGAGTCCCGAGCGCACA
AGCCATAGACAGAGTGCTGCTACAACAACAGCAGCGCACGTTGGAAGGCA
TAGCGAGCGGTACACCCGGAATCTACCCAGACGTGTGCGTAGGTTTGATG
GAAACGTGAATTGGTTGTGCCCCCCAAGACGGAAGCAGGGATATCTGGAA
GCTTGTGGGTCGCCTCTGATTTGACTTTTTACGGGTGTCTCTGCCGTTGA
CTGCATGAAGAAGCGAGCATACCGCCAGCCATTTTCTCAATCGCCTTCTA
TGGCGCCGGGTGCCGTTGAACCACAGACCACACGACCGAGCAGTGGCGCT
GCAAAGAATGCAGCAATCGGGGGCGTTCTTGACGTCGGCGGAGCAAGTGA
CCTTCCAACTCCTCCACACGGCCGAAAACGAAAAGTGAGTTTACATCGTC
GTTCTGCAAAATACGTATTTGAACCCCGGCAGTGGAAGCCCATGTGTACC
CTCTTTCGCGTGCTAAATGTGCTCTAGTTTACTGTTTACGGGCCGTGGTC
CCGATCAACCAACGGAAAGTCTTGGGGGTTGATTAAAAACCTAAACAATC
ACCGCAGAGCATCCCTCGCCAATGTTTAACGCCCACACTCTGAGGGCATT
CGGCGTATTTGGTGACGCCGCTTATGTTGTCAATGAGGAACAGTGATGCC
GTAGCGGAACCTGCAGCGCGGTCCGAGAGCACCCTTGTCTTCGAGAGCAC
TACTATGGAGTTGTCACGCCCGAACCCCGCCTGGCACACTACGCCGACGC
TTCCCGCGGAGGCACTGCGAAATCCACCACCTGGTATCAGTCGGCTTCCC
CTTCGGCCATCAGCAACACGTACTAACGCCTGACACGTGTCGCTGATGAC
CCTGAGGGAACGGATTCCGCAGTGCCCCCGCGGGCAGCGTCGGCGTAGAG
TGCCGGGCGGGCTCCGCGTGGACACTGCAATGGCCTCGAAGACGGGGGCG
CTCTCGGACCGCGCTGCAGGTCCCTACAAGGAGTTGGTAGACGCCTTGCA
TCGCAACCAATTGTGCTGCGCCGCACGGGTTGAAACGGACGATGGCGTGC
CATGTACGTAGCGCCATTACTGACTGGGTCATCGCCTGCCGCACACTCCG
CTGTGGGTCTCTTATCGTGGATTCGCCGCCGGTTGGTGTCCGCCTCGGCG
ATGGTTTGAGTTCAGAGCTGCTTGCCGCCTCCCTCTCCTTTCGTCAACTT
TAATACTACAGGTTCAGGGCCGTGTCCAACTTGGTGAAGAAGCGCAACGC
CGAGGGTATAAACACGTTTTCCACAATGTCCACCCTCTAGGAGAGTCTCG
ACTACTTTTCGAAGGGATCGTGCCTTGTATGTGACCGATACAAGCCCTGC
TGCTGTCGATGGCTCTGCTGTTCTCGCTCGGCACGGTTCGAGGGTTGTTC
GGACTGCTTGTGTGATGGGGTAATTGTTGGGCAAAGGCGATGTCTGTTTC
CGGCCGCATAATTGTGCCCCTCGAGAGAGACAGAGAGAGAGAGAGACAGA
CAGAGACAGACAGAGAAGAGGTGATGGCACTGGAGATTTTTGCTATTCAT
GTATGTATGCAGAGTAGTCAGGCGGGGTAGAGAAGCCATTGTTTGTTGTT
TTGCTAAGGTGGACCTGATGTTCTGCGGAGTATTCGGCACGGTGGGGTAC
CAAGCGCGACAGAAGGCTTCCGAACGTTCCGTCCCTGGACGTTCACGATT
CGCTTTTTCCTGCAGTAAAACCGTATCACATGGTGGAAAAAGCGTTTTAA
TGTGAGAGCAGGGTATTTTGAGCGGTAGGACGAAGGGGGGTAGAATGCGA
GGACGGCGTTGGGTGTGGTGAACTGCGTCGCGAAGAAAGGAGAAACCCTC
CCGGTCTCGGCATTCAAAGAGAACGAAACAAGCTTGTATCTAAAGGGCTT
ACAATCGTACACGTTCGAGATGGAGCGGCGTGTAAGATGCAATACCTCCC
GCGAGTTTGTTGGCGAAGTGCACCCCGCTCGTACTTGTCGCCAGTTTGGT
GACGCGTGTTGCGACTTACACGAGCGGCAGGCAGGTGAGCGTGTCGGAGG
GATTGAATAGAATTGAAGACGACAGATAACATGCAAACCACGAAGAACAA
ACCCGGAAAAATCTCGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig968:5152..9718+

>mRNA_Ecto-sp9_F_contig968.17780.1 ID=mRNA_Ecto-sp9_F_contig968.17780.1|Name=mRNA_Ecto-sp9_F_contig968.17780.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1638bp|location=Sequence derived from alignment at Ecto-sp9_F_contig968:5152..9718+ (Ectocarpus species9 EcSCA_722f female)
ATGCGGATTGGTGACCTGTTGCTCTTTGCAGTAAGTGCTCGTGGTTTTTT
CCTGAGCGTCACGCCCTCTGCACACTACAGCAGTACGATCTGGAAAAGAC
ACGGCGGCAGAGAAAAAAACTCTCCGCTGCTCCTGCTTCAGCCACCGCCC
TCGGCCAGAGCATCCTTGGACATACAAGTAGTAGAGATGGCTGCGGCAAC
GGCCTCGCGACGCCTCGGGAAAATCGTTCCCTCTAGCACTGTCTTCTTCG
CGTGCGATGTCCAGGAGCGATTCCGCGACCTCATCCACAACATGCCGGCG
GTCATCTCTACTGCAAAATGCGGATTGGTGACCTGTTGCTCTTTGCAGTA
AGTGCTCGTGGTTTTTTCCTGAGCGTCACGCCCTCTGCACACTACAGCAG
TACGATCTGGAAAAGACACGGCGGCAGAGAAAAAAACTCTCCGCTGCTCC
TGCTTCAGCCACCGCCCTCGGCCAGAGCATCCTTGGACATACAAGTAGTA
GAGATGGCTGCGGCAACGGCCTCGCGACGCCTCGGGAAAATCGTTCCCTC
TAGCACTGTCTTCTTCGCGTGCGATGTCCAGGAGCGATTCCGCGACCTCA
TCCACAACATGCCGGCGGTCATCTCTACTGCAAAGTTCATGCTGGACGTC
TCGCAAGAGCTGGAAGTGCCGTGCATCGTAACCGAGCAGTACCCGAAGGT
TCATGCTGGACGTCTCGCAAGAGCTGGAAGTGCCGTGCATCGTAACCGAG
CAGTACCCGAAGGCGCTGTTGCACACGGTCCCAGAGCTCAATGTCGGCAA
AGGCCCCGACCAAATCAATGCGCTGTTGCACACGGTCCCAGAGCTCAATG
TCGGCAAAGGCCCCGACCAAATCAATGTCCCAATCTTTGAGAAGAAGTTG
TTTTCAATGTGCACCAAAGAGGTCGAGGAAGAACTGAAGAAATTACCGGA
CAGGAAAGACGCCGTGCTCTTTGGCATCGAGGCCCACGTGTGTGTCACCC
AGGTCCCAATCTTTGAGAAGAAGTTGTTTTCAATGTGCACCAAAGAGGTC
GAGGAAGAACTGAAGAAATTACCGGACAGGAAAGACGCCGTGCTCTTTGG
CATCGAGGCCCACGTGTGTGTCACCCAGACGTGCCTGGATTTGCTGGACC
TCGGCTACGACGTCCACGTTGTCTGCGATGGCGTGTCAAGCCAAAAACGT
GCCTGGATTTGCTGGACCTCGGCTACGACGTCCACGTTGTCTGCGATGGC
GTGTCAAGCCAAAAACCACACGACCGAGCAGTGGCGCTGCAAAGAATGCA
GCAATCGGGGGCGTTCTTGACGTCGGCGGAGCAAGTGACCTTCCAACTCC
TCCACACGGCCGAAAACGAAAAACCACACGACCGAGCAGTGGCGCTGCAA
AGAATGCAGCAATCGGGGGCGTTCTTGACGTCGGCGGAGCAAGTGACCTT
CCAACTCCTCCACACGGCCGAAAACGAAAAGTTCAGGGCCGTGTCCAACT
TGGTGAAGAAGCGCAACGCCGAGGGTATAAACACGTTTTCCACAATGTCC
ACCCTCTAGGTTCAGGGCCGTGTCCAACTTGGTGAAGAAGCGCAACGCCG
AGGGTATAAACACGTTTTCCACAATGTCCACCCTCTAG
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