mRNA_Ecto-sp9_F_contig9676.17776.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9676.17776.1
Unique NamemRNA_Ecto-sp9_F_contig9676.17776.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9676.17776.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.470e-42
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = -2 
Query:    3 LRRKDLVVGGDHQRLAQVFEGAAYASSEGRASMSSSSRRNASPPLGXXXXXXXXXXXEMLAWATPRAGASPPLGGVGGSSLASGSEIEASETSDWD 290
            LRRKDLVVGGDHQRLAQVFEGAAYASSEGRASMSSSSRRNASPPLGXXXXXXXXXXXEMLAWATPRAGASPPLGGVGGSSLASGSEIEASETSDWD
Sbjct:  760 LRRKDLVVGGDHQRLAQVFEGAAYASSEGRASMSSSSRRNASPPLGXXXXXXXXXXXEMLAWATPRAGASPPLGGVGGSSLASGSEIEASETSDWD 855
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BLAST of mRNA_Ecto-sp9_F_contig9676.17776.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL36_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.600e-40
Identity = 81/98 (82.65%), Postives = 82/98 (83.67%), Query Frame = -2 
Query:    3 PPLRRKDLVVGGDHQRLAQVFEGAAYASSEGRASMSSSSRRNASPPLGXXXXXXXXXXXEMLAWATPRAGASPPLGGVGGSSLASGSEIEASETSDWD 296
            PPLRRKDLV GG+HQRLAQVFEGAAYASSEG  SMSSSSRRNASPPLG           EML WATPR GASPPLGGVGGSSLASGSEIEASETSDWD
Sbjct:  622 PPLRRKDLVFGGNHQRLAQVFEGAAYASSEGHISMSSSSRRNASPPLGNSSPPPGVGSLEMLTWATPRPGASPPLGGVGGSSLASGSEIEASETSDWD 719
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9676.17776.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.470e-42100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.600e-4082.65protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9676contigEcto-sp9_F_contig9676:1190..1501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.5699441-CDS-Ecto-sp9_F_contig9676:1189..15011622931055.5699441-CDS-Ecto-sp9_F_contig9676:1189..1501Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9676 1190..1501 +
1692279011.9316864-CDS-Ecto-sp9_F_contig9676:1189..15011692279011.9316864-CDS-Ecto-sp9_F_contig9676:1189..1501Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9676 1190..1501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9676.17776.1prot_Ecto-sp9_F_contig9676.17776.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9676 1190..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9676.17776.1

>prot_Ecto-sp9_F_contig9676.17776.1 ID=prot_Ecto-sp9_F_contig9676.17776.1|Name=mRNA_Ecto-sp9_F_contig9676.17776.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=104bp
WSQSLVSLASISDPDARLLPPTPPRGGDAPALGVAHANISGDPTPRGGEE
FPSGGDAFRREDDDIEARPSEEAYAAPSKTWARRWWSPPTTKSFLLSGGV
ADST
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mRNA from alignment at Ecto-sp9_F_contig9676:1190..1501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9676.17776.1 ID=mRNA_Ecto-sp9_F_contig9676.17776.1|Name=mRNA_Ecto-sp9_F_contig9676.17776.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9676:1190..1501+ (Ectocarpus species9 EcSCA_722f female)
TGGTCCCAGTCGCTGGTTTCGCTGGCCTCGATCTCCGACCCGGACGCCAG
GCTGCTGCCCCCCACGCCGCCGAGAGGGGGAGACGCGCCGGCTCTCGGCG
TGGCCCACGCCAACATCTCCGGAGACCCGACCCCGAGGGGAGGGGAGGAG
TTCCCAAGCGGGGGGGATGCGTTTCGCCGTGAAGACGACGACATCGAAGC
GCGGCCTTCGGAGGAGGCGTACGCCGCACCCTCGAAGACCTGGGCGAGGC
GCTGGTGGTCCCCCCCGACAACCAAGTCCTTCCTCCTGAGTGGAGGGGTC
GCTGACTCAACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9676:1190..1501+

>mRNA_Ecto-sp9_F_contig9676.17776.1 ID=mRNA_Ecto-sp9_F_contig9676.17776.1|Name=mRNA_Ecto-sp9_F_contig9676.17776.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9676:1190..1501+ (Ectocarpus species9 EcSCA_722f female)
TGGTCCCAGTCGCTGGTTTCGCTGGCCTCGATCTCCGACCCGGACGCCAG
GCTGCTGCCCCCCACGCCGCCGAGAGGGGGAGACGCGCCGGCTCTCGGCG
TGGCCCACGCCAACATCTCCGGAGACCCGACCCCGAGGGGAGGGGAGGAG
TTCCCAAGCGGGGGGGATGCGTTTCGCCGTGAAGACGACGACATCGAAGC
GCGGCCTTCGGAGGAGGCGTACGCCGCACCCTCGAAGACCTGGGCGAGGC
GCTGGTGGTCCCCCCCGACAACCAAGTCCTTCCTCCTGAGTGGAGGGGTC
GCTGACTCAACCTGGTCCCAGTCGCTGGTTTCGCTGGCCTCGATCTCCGA
CCCGGACGCCAGGCTGCTGCCCCCCACGCCGCCGAGAGGGGGAGACGCGC
CGGCTCTCGGCGTGGCCCACGCCAACATCTCCGGAGACCCGACCCCGAGG
GGAGGGGAGGAGTTCCCAAGCGGGGGGGATGCGTTTCGCCGTGAAGACGA
CGACATCGAAGCGCGGCCTTCGGAGGAGGCGTACGCCGCACCCTCGAAGA
CCTGGGCGAGGCGCTGGTGGTCCCCCCCGACAACCAAGTCCTTCCTCCTG
AGTGGAGGGGTCGCTGACTCAACC
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