mRNA_Ecto-sp9_F_contig9675.17775.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9675.17775.1
Unique NamemRNA_Ecto-sp9_F_contig9675.17775.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 7.120e-20
Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = 1
Query:    4 GPSL--CLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNI-PAATLDAASDPLASVECIKFGCRFNGSSTALFGPETSSRSSS--MQTSTCRSIWFNGQHRC 450
            GPS   CL+A++ AL E  +G+ WYTST +LQL SL+FCVACR+   +HL+V+   PR L   A         HP   C   V   R R++TW +  AA L      +  V+C+KFG     +     G +   RSS   +  ST RS+W +GQH C
Sbjct:  107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADA----PPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGETSLEALRLWHGRDGWKRSSFSFLHYSTSRSVWSSGQHLC 259          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.190e-19
Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   16 CLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNIPAAT-LDAASDPLASVECIKFGCRFNGSSTALFGP 375
            CL ++I AL E  DG  WYTST +LQ  SL+FC+ACR+ P MHL+V+   PR+L  AA         HP   C   V   R R +TWN+ AA  L      +  V+C++FG  F+GS  A+  P
Sbjct:   14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADA----PPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWP 133          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.120e-19
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   31 IAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEM---------HPITACVQPFRPRKMTWNIPAATLDAAS-DPLASVECIKF 333
            + AL E   GK+WY ST QLQL S++FCVACRSV  +HL VE GTPRHLW      ++               +   V PFRPR++TWN+P + L  AS D   ++EC+ F
Sbjct:    1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSF 111          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.680e-18
Identity = 53/109 (48.62%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    4 GPSLCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELG-TPRHLWV--AATRLRTRNEMHPITACVQPFRPRKMTWNIPAATLDAASDPLASVE 321
            GP  CL+A   AL    DG  WYTST +LQL SLQFCV CR VP +HL V     P  LW   AAT  RT     P T  V  FRPR++TW  PA  L       A VE
Sbjct:    3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEART-GAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVE 110          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.750e-18
Identity = 55/124 (44.35%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 SGPSLCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLW-----VAATRLRTRNEMHPITACVQP-FRPRKMTWNIPAATLDAASDPLASVECIKFGCRFNGS 354
            +GPS CLDA   AL +  DG  WY ST QLQL SL FCVACRSVP MHL+V+  TP  L+      AA R +       + A   P  R RK+TW +   T       L+SVE    G   N S
Sbjct:   25 AGPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDS 148          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.020e-17
Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 1
Query:    4 GPS--LCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNIP-AATLDAASDPLASVECIKFGCRFNGSSTALFGPE 378
            GP+   CL+A+I AL E  DGK WYTST +LQL SL FC+ACR+   +HL V+   PR L  +A         HP   C   V   R R++TWN+P AA L      +  +E ++FG  F  S  A+  PE
Sbjct:   45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADA----PPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPE 171          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.640e-17
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   28 MIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITACVQPFRPRKMTWNIPAAT-LDAASDPLASVECIKFGCRFNGSSTALFGP 375
            +I AL E  DGK WYTST +LQL SL+FC+ACR    + L+V+  TPR+L +AA      +   P    V   R R++ WN+P AT L      L  V C++FG  FNGS  A+  P
Sbjct:   21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNL-LAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWP 136          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.530e-17
Identity = 51/126 (40.48%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   10 SLCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNIPAAT-LDAASDPLASVECIKFGCRFNGSSTALFGP 375
            S CL  +  AL E  DGK WYTST +LQL SL+ C+ACR    +HL V+  TPR L  AA         HP   C   V   R R+ TWN+P A+ +  +      V+ ++FG  F+GS  A+  P
Sbjct:  134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADA----PSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWP 255          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.420e-16
Identity = 53/124 (42.74%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   16 CLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNIP-AATLDAASDPLASVECIKFGCRFNGSSTALFGP 375
            CL+A+  ALGE  DGK WYTST +LQL SL+FC+ACR+   +HL V++  PR L  AA         HP       V   R R +TWN+P AA L +    L  ++ + FG  F GS  A+  P
Sbjct:   36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADG----PPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWP 155          
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.390e-15
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    1 SGPSLCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVA-ATRLRTRNEMHPITACVQPFRPRKMTWNIPAATL-DAASDPLASVECIKFGCRFN 348
            +GPS CLDA+I AL +   G EWYTST QLQL SL+ C +CRS+  + L V+ GTP  LW   AT   TR+        V   R R +TW +P   L +   D  + V     G  F+
Sbjct:    7 AGPSRCLDALIIALNQA-SGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFD 123          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
Uncharacterized7.120e-2039.49protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.190e-1942.74protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.120e-1945.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.680e-1848.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.750e-1844.35protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.020e-1741.98protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.640e-1743.59protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.530e-1740.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.420e-1642.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.390e-1541.53protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9675contigEcto-sp9_F_contig9675:3906..4519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_001110.1
Exons2
Model size589
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9675.17775.1prot_Ecto-sp9_F_contig9675.17775.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9675 4036..4492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.4728236-UTR-Ecto-sp9_F_contig9675:3905..40351622931055.4728236-UTR-Ecto-sp9_F_contig9675:3905..4035Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9675 3906..4035 -
1692279011.8883672-UTR-Ecto-sp9_F_contig9675:3905..40351692279011.8883672-UTR-Ecto-sp9_F_contig9675:3905..4035Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9675 3906..4035 -
1622931055.5238833-UTR-Ecto-sp9_F_contig9675:4492..45191622931055.5238833-UTR-Ecto-sp9_F_contig9675:4492..4519Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9675 4493..4519 -
1692279011.9217749-UTR-Ecto-sp9_F_contig9675:4492..45191692279011.9217749-UTR-Ecto-sp9_F_contig9675:4492..4519Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9675 4493..4519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931055.4930124-CDS-Ecto-sp9_F_contig9675:4035..42531622931055.4930124-CDS-Ecto-sp9_F_contig9675:4035..4253Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9675 4036..4253 -
1692279011.899318-CDS-Ecto-sp9_F_contig9675:4035..42531692279011.899318-CDS-Ecto-sp9_F_contig9675:4035..4253Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9675 4036..4253 -
1622931055.5083966-CDS-Ecto-sp9_F_contig9675:4278..44921622931055.5083966-CDS-Ecto-sp9_F_contig9675:4278..4492Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9675 4279..4492 -
1692279011.9095128-CDS-Ecto-sp9_F_contig9675:4278..44921692279011.9095128-CDS-Ecto-sp9_F_contig9675:4278..4492Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9675 4279..4492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9675.17775.1

>prot_Ecto-sp9_F_contig9675.17775.1 ID=prot_Ecto-sp9_F_contig9675.17775.1|Name=mRNA_Ecto-sp9_F_contig9675.17775.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=144bp
MIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHL
WVAATRLRTRNEMHPITACVQPFRPRKMTWNIPAATLDAASDPLASVECI
KFGCRFNGSSTALFGPETSSRSSSMQTSTCRSIWFNGQHRCNN*
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mRNA from alignment at Ecto-sp9_F_contig9675:3906..4519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9675.17775.1 ID=mRNA_Ecto-sp9_F_contig9675.17775.1|Name=mRNA_Ecto-sp9_F_contig9675.17775.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=614bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9675:3906..4519- (Ectocarpus species9 EcSCA_722f female)
TCAGGCCCCAGTCTTTGTCTGGACGCCATGATCGCGGCCCTCGGTGAGCC TCTTGATGGAAAGGAATGGTACACGTCTACAAGTCAGCTTCAGCTGGTGT CGCTGCAGTTCTGCGTGGCTTGCAGAAGTGTTCCTCGAATGCATCTACGA GTTGAACTTGGGACTCCTCGACATCTGTGGGTCGCCGCGACCAGACTCCG AACGCGCAACGAGATGCATCCGATTACGGCGTGTGTGCAGCGTTTCGATT ACGGCGCGTGTGCCAGCGTTTCGGCCGCGCAAGATGACGTGGAATATACC GGCTGCGACGCTGGATGCCGCAAGCGATCCTTTGGCAAGCGTGGAGTGCA TCAAGTTCGGTTGTCGTTTCAACGGTAGTTCGACAGCATTGTTTGGCCCC GAAACGTCAAGCAGATCAAGTTCGATGCAGACTTCAACATGCCGGTCGAT ATGGTTCAATGGCCAGCATCGCTGCAACAACTGAAGTTTGGCCAAGACTT CGACTGGCCTATCGACAGGATAGCGTGCCATCATCTCTTCAACGCATATC ACTCGGGATGTCATTCAACTGGCCTATCGACAGGGTAACGTGGCCGCCGT CTCTTCAACGGCTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9675:3906..4519-

>mRNA_Ecto-sp9_F_contig9675.17775.1 ID=mRNA_Ecto-sp9_F_contig9675.17775.1|Name=mRNA_Ecto-sp9_F_contig9675.17775.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9675:3906..4519- (Ectocarpus species9 EcSCA_722f female)
ATGATCGCGGCCCTCGGTGAGCCTCTTGATGGAAAGGAATGGTACACGTC
TACAAGTCAGCTTCAGCTGGTGTCGCTGCAGTTCTGCGTGGCTTGCAGAA
GTGTTCCTCGAATGCATCTACGAGTTGAACTTGGGACTCCTCGACATCTG
TGGGTCGCCGCGACCAGACTCCGAACGCGCAACGAGATGCATCCGATTAC
GGCGTGTGTGCAGCATGATCGCGGCCCTCGGTGAGCCTCTTGATGGAAAG
GAATGGTACACGTCTACAAGTCAGCTTCAGCTGGTGTCGCTGCAGTTCTG
CGTGGCTTGCAGAAGTGTTCCTCGAATGCATCTACGAGTTGAACTTGGGA
CTCCTCGACATCTGTGGGTCGCCGCGACCAGACTCCGAACGCGCAACGAG
ATGCATCCGATTACGGCGTGTGTGCAGCCGTTTCGGCCGCGCAAGATGAC
GTGGAATATACCGGCTGCGACGCTGGATGCCGCAAGCGATCCTTTGGCAA
GCGTGGAGTGCATCAAGTTCGGTTGTCGTTTCAACGGTAGTTCGACAGCA
TTGTTTGGCCCCGAAACGTCAAGCAGATCAAGTTCGATGCAGACTTCAAC
ATGCCGGTCGATATGGTTCAATGGCCAGCATCGCTGCAACAACTGACGTT
TCGGCCGCGCAAGATGACGTGGAATATACCGGCTGCGACGCTGGATGCCG
CAAGCGATCCTTTGGCAAGCGTGGAGTGCATCAAGTTCGGTTGTCGTTTC
AACGGTAGTTCGACAGCATTGTTTGGCCCCGAAACGTCAAGCAGATCAAG
TTCGATGCAGACTTCAACATGCCGGTCGATATGGTTCAATGGCCAGCATC
GCTGCAACAACTGA
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