mRNA_Ecto-sp9_F_contig9675.17775.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 7.120e-20 Identity = 62/157 (39.49%), Postives = 84/157 (53.50%), Query Frame = 1
Query: 4 GPSL--CLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNI-PAATLDAASDPLASVECIKFGCRFNGSSTALFGPETSSRSSS--MQTSTCRSIWFNGQHRC 450
GPS CL+A++ AL E +G+ WYTST +LQL SL+FCVACR+ +HL+V+ PR L A HP C V R R++TW + AA L + V+C+KFG + G + RSS + ST RS+W +GQH C
Sbjct: 107 GPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADA----PPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGETSLEALRLWHGRDGWKRSSFSFLHYSTSRSVWSSGQHLC 259
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 1.190e-19 Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 16 CLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNIPAAT-LDAASDPLASVECIKFGCRFNGSSTALFGP 375
CL ++I AL E DG WYTST +LQ SL+FC+ACR+ P MHL+V+ PR+L AA HP C V R R +TWN+ AA L + V+C++FG F+GS A+ P
Sbjct: 14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADA----PPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWP 133
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.120e-19 Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 31 IAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEM---------HPITACVQPFRPRKMTWNIPAATLDAAS-DPLASVECIKF 333
+ AL E GK+WY ST QLQL S++FCVACRSV +HL VE GTPRHLW ++ + V PFRPR++TWN+P + L AS D ++EC+ F
Sbjct: 1 MVALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSF 111
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 1.680e-18 Identity = 53/109 (48.62%), Postives = 58/109 (53.21%), Query Frame = 1
Query: 4 GPSLCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELG-TPRHLWV--AATRLRTRNEMHPITACVQPFRPRKMTWNIPAATLDAASDPLASVE 321
GP CL+A AL DG WYTST +LQL SLQFCV CR VP +HL V P LW AAT RT P T V FRPR++TW PA L A VE
Sbjct: 3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEART-GAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVE 110
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 1.750e-18 Identity = 55/124 (44.35%), Postives = 65/124 (52.42%), Query Frame = 1
Query: 1 SGPSLCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLW-----VAATRLRTRNEMHPITACVQP-FRPRKMTWNIPAATLDAASDPLASVECIKFGCRFNGS 354
+GPS CLDA AL + DG WY ST QLQL SL FCVACRSVP MHL+V+ TP L+ AA R + + A P R RK+TW + T L+SVE G N S
Sbjct: 25 AGPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDS 148
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.020e-17 Identity = 55/131 (41.98%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 4 GPS--LCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNIP-AATLDAASDPLASVECIKFGCRFNGSSTALFGPE 378
GP+ CL+A+I AL E DGK WYTST +LQL SL FC+ACR+ +HL V+ PR L +A HP C V R R++TWN+P AA L + +E ++FG F S A+ PE
Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADA----PPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPE 171
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 2.640e-17 Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 28 MIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITACVQPFRPRKMTWNIPAAT-LDAASDPLASVECIKFGCRFNGSSTALFGP 375
+I AL E DGK WYTST +LQL SL+FC+ACR + L+V+ TPR+L +AA + P V R R++ WN+P AT L L V C++FG FNGS A+ P
Sbjct: 21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNL-LAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWP 136
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 9.530e-17 Identity = 51/126 (40.48%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 10 SLCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNIPAAT-LDAASDPLASVECIKFGCRFNGSSTALFGP 375
S CL + AL E DGK WYTST +LQL SL+ C+ACR +HL V+ TPR L AA HP C V R R+ TWN+P A+ + + V+ ++FG F+GS A+ P
Sbjct: 134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADA----PSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWP 255
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 3.420e-16 Identity = 53/124 (42.74%), Postives = 69/124 (55.65%), Query Frame = 1
Query: 16 CLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVAATRLRTRNEMHPITAC---VQPFRPRKMTWNIP-AATLDAASDPLASVECIKFGCRFNGSSTALFGP 375
CL+A+ ALGE DGK WYTST +LQL SL+FC+ACR+ +HL V++ PR L AA HP V R R +TWN+P AA L + L ++ + FG F GS A+ P
Sbjct: 36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADG----PPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWP 155
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 82.0 bits (201), Expect = 2.390e-15 Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 1
Query: 1 SGPSLCLDAMIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLWVA-ATRLRTRNEMHPITACVQPFRPRKMTWNIPAATL-DAASDPLASVECIKFGCRFN 348
+GPS CLDA+I AL + G EWYTST QLQL SL+ C +CRS+ + L V+ GTP LW AT TR+ V R R +TW +P L + D + V G F+
Sbjct: 7 AGPSRCLDALIIALNQA-SGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFD 123 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9675.17775.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9675.17775.1 >prot_Ecto-sp9_F_contig9675.17775.1 ID=prot_Ecto-sp9_F_contig9675.17775.1|Name=mRNA_Ecto-sp9_F_contig9675.17775.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=144bp MIAALGEPLDGKEWYTSTSQLQLVSLQFCVACRSVPRMHLRVELGTPRHLback to top mRNA from alignment at Ecto-sp9_F_contig9675:3906..4519- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9675.17775.1 ID=mRNA_Ecto-sp9_F_contig9675.17775.1|Name=mRNA_Ecto-sp9_F_contig9675.17775.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=614bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9675:3906..4519- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9675:3906..4519- >mRNA_Ecto-sp9_F_contig9675.17775.1 ID=mRNA_Ecto-sp9_F_contig9675.17775.1|Name=mRNA_Ecto-sp9_F_contig9675.17775.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=864bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9675:3906..4519- (Ectocarpus species9 EcSCA_722f female)back to top |