mRNA_Ecto-sp9_F_contig967.17770.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig967.17770.1
Unique NamemRNA_Ecto-sp9_F_contig967.17770.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST8_ECTSI)

HSP 1 Score: 851 bits (2199), Expect = 4.500e-306
Identity = 460/479 (96.03%), Postives = 464/479 (96.87%), Query Frame = 2 
Query:   59 MPIFHLVGGFLLVSFWHSAGAFRTGAALAQRGCERTRGKHDRMCREIEPCSAGRRSLSAGVSKGGWCASPQDSTSGPREALAATSSAAVATMAGSSTEAVGRCGATAVSLTRNQLISSMATAAAGFLLAPWQASAADVETTLVSGAASTGPAAAQGEVGGGVEEVAAAKYVVQSDEVGVLFGDGPIGIKLGDNPLKASGVCRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKPAERLEPKEVAELIRLSPRPMEIVFRDPELLGRRLQAEADRKAEAVKRSKQKAAADAASPEXXXXXXGDSATATTAVDPRSGSVGSGGGSASSGELRVTQVGKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSINFSINASDARDNFYTDDACDAAAVAAGNASGQCKK 1495
            M +FHLVGGFLLVSFWHSAGAFRTGAALAQRGCERT GKHDR+CREIEPCSAGRRSLSA  SKGGWCASPQDSTSGPREALAATSSAAVATMAGSSTEAVGRCGATAVSLTRNQL+SSMATAAAGFLLAP QASAADVETTLVS AASTGPAA QGEVGGGVEEVAAAKYVVQSDEVGVLFGDGPIGIKLGDNPLKASGVCRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKPAERLEPKEVAELIRLSPRPMEIVFRDPELLGRRLQAEADRKAEAVKR KQKAAADAASPE      GDSATATTAVDPRSGSVG+GGGSASSGELRVTQVGKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSINFSINASDARDNFYTDD CDAAAVAAGNASGQCKK
Sbjct:    1 MLLFHLVGGFLLVSFWHSAGAFRTGAALAQRGCERTSGKHDRICREIEPCSAGRRSLSADASKGGWCASPQDSTSGPREALAATSSAAVATMAGSSTEAVGRCGATAVSLTRNQLLSSMATAAAGFLLAPRQASAADVETTLVSEAASTGPAAGQGEVGGGVEEVAAAKYVVQSDEVGVLFGDGPIGIKLGDNPLKASGVCRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKPAERLEPKEVAELIRLSPRPMEIVFRDPELLGRRLQAEADRKAEAVKRRKQKAAADAASPETAAPDTGDSATATTAVDPRSGSVGNGGGSASSGELRVTQVGKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSINFSINASDARDNFYTDDPCDAAAVAAGNASGQCKK 479
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5N8_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.670e-44
Identity = 120/303 (39.60%), Postives = 164/303 (54.13%), Query Frame = 2 
Query:  593 VLFGDGPIGIKLGDNPLKASGVCRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKPA-ERLEPKEVAELIRLSPRPMEIVFRDPELLGRRLQAEADRKAEAVKRSKQKAAADAASPEXXXXXXGDSATATTAVDPRSGSVGSGGGSASSGELRVTQVGKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSINFSINASDARD-NFYTDDACDAAAVAAGNASGQCKK 1495
            V F  GP+GI+L +     S  C V V  V  GS+A     +  G GV+ VG     +   P EVA+ I+ +P P+ ++F+ P +                       A D  +           ATA  AV     S+G+        +L V ++  +   CG  ++ GDLIE RY+AR+A D   E+D+SD+RGTG PYAI LG GDVV+GLDLSL+DMC+GERR++E+PA LAYG KG+  FGVP +       +VFGV+LVSIN   + +  RD N+YT D C+  A  AG ASG C +
Sbjct:    7 VTFESGPVGIELAE--ALRSQPCSVIVKSVRAGSKAAADRRIVPGLGVSVVGALDVCKGKSPPEVAKFIKTAPYPLTLIFKYPPV-----------------------AEDTPT-----------ATAEGAV-----SLGTEAPQQPVEQLMVKRL-TRARPCGMVSQEGDLIEIRYTARIA-DTMREYDASDKRGTGQPYAITLGRGDVVRGLDLSLYDMCIGERRRVEVPAGLAYGAKGNSLFGVPANSA-----LVFGVQLVSINGVTDETATRDSNYYTGDPCNDEARRAGVASGLCDR 261
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KXW8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.700e-27
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 2 
Query: 1040 LRVTQVGKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSINF 1396
            L + +V     +CG +++ GD++E  Y AR+AS     +DSS++RGTG PY  VLGNGDV+KG+DL LFDMC GE R+++IP+ L YGRKGS  F +P     G   + + VELV +NF
Sbjct:   12 LVIKKVSPPGGICGIKSRRGDVLEINYEARVASPGGPIYDSSEQRGTGQPYQFVLGNGDVIKGVDLGLFDMCPGEVRELDIPSALGYGRKGSILFDIP-----GDVRLWWKVELVRLNF 125
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J722_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 9.300e-24
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 2 
Query: 1055 VGKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSIN 1393
             G +   C  +T+A D++E  +S RLAS   +EFDSS+ R +G P+A  LGNGDVV+GLDL   +MC+GE R + +P+RL +G +GSK FGVPPD     A + + V LVSIN
Sbjct:   72 TGPQDPKCAFKTRASDVVEIEFSGRLASS-GLEFDSSEMR-SGRPFAFTLGNGDVVRGLDLGTLEMCIGEERLLLVPSRLGFGTRGSKVFGVPPD-----APLDYRVRLVSIN 177
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFR5_DIALT)

HSP 1 Score: 112 bits (281), Expect = 2.410e-22
Identity = 95/305 (31.15%), Postives = 144/305 (47.21%), Query Frame = 2 
Query:  515 AAQGEVGGGVEEVAAAKYVVQSDEVGVLFGDGPIGIKLGDNPLKASGVCRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKP-AERLEPKEVAELIRLSPRPMEIVFRDPELLGRRLQAEADRKAEAVKRSKQKAAADAASPEXXXXXXGDSATATTAVDPRSGSVGSGGGSASSGELRVTQVGKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSINFSINASDARDN 1426
            AA+ + GG + +  A +   +     V F    +G+ L D  +  +   RV V+ ++ GS+A R   +RAG  + A+GG+  A  +  ++V   I  +PRP+ + F     LG      AD   EAV                     G +A A  A   R                ++ +  +    C  R++ GD IE  Y  RLA       DSS  RG G P+A+ LGNGDV + L+L ++DMC+GE R+I  P RLAYG  G++A GVPP+     A +VF V + +INF  + +  R++
Sbjct:  309 AARADDGGALPDAGAPRDATRERRT-VSFSARSLGLALAD--VDTADGARVAVSRIVPGSEAERT-GVRAGVFLTAIGGEQLAPTVRAEDVRATIARAPRPVALTFAGA--LG------AD---EAV---------------------GLAAKARRAETER---------------FKLERTREPAPNCAIRSRKGDTIEIEYETRLADATQRVIDSSFMRGIGAPFALQLGNGDVPRALELGIYDMCIGEARRIVAPPRLAYGLAGNRALGVPPN-----ATIVFDVTMSAINFQTDPATRRED 557
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KS47_FISSO)

HSP 1 Score: 107 bits (267), Expect = 4.470e-22
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 2 
Query: 1061 KKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSIN 1393
            +K   C  +++ GD++E +Y AR  S     +DSS+RRGTG PY +VLG+GD++ G+DL L+DMC GE R ++IP  L YG KG+K F VPPD       + + V+L++IN
Sbjct:  160 QKTTKCSLQSRRGDVLEIKYEARFQSPQGPIYDSSERRGTGRPYQMVLGSGDILAGVDLGLYDMCPGEIRTLQIPPPLGYGPKGNKMFRVPPD-----TTLFWKVQLMTIN 265
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AIC8_9EUKA)

HSP 1 Score: 102 bits (254), Expect = 2.130e-20
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 2 
Query: 1058 GKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSIN 1393
            G +   C  RT+  D++E  YSA L +D   EFDSS++R +G P+A  LGNGDVV+GL+L   +MC+GE R + +P +LA+G +GSK   VPPD     A VV+ ++L SIN
Sbjct:  142 GPQDPSCRFRTRESDVVEIEYSASLEAD-GREFDSSEQR-SGRPFAFALGNGDVVRGLELGTLEMCIGEERLVHVPPQLAFGSRGSKLLRVPPD-----APVVYRIKLKSIN 246
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V2L7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.770e-19
Identity = 52/125 (41.60%), Postives = 79/125 (63.20%), Query Frame = 2 
Query: 1019 GSASSGELRVTQVGKKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSIN 1393
            G  S   +   +V K+P     +++ GDL+E  YSA +A     E+DSS  RGTG PY +VLG+GD++ G+DL L+DM  GE+R+++IP  L +G +G K FG+P       + +V+ VELV++N
Sbjct:   60 GDTSPAAVYTKRVLKEPPNRILQSRRGDLLEINYSATIAGT-DYEYDSSAIRGTGQPYQMVLGSGDMIPGVDLGLYDMSPGEKRQLDIPQTLGHGPRGRKNFGIPE-----GSSLVWTVELVALN 178
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ET29_TRICV)

HSP 1 Score: 100 bits (249), Expect = 3.990e-19
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 2 
Query: 1061 KKPEVCGTRTKAGDLIEFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSIN 1393
            +K   C  +++ GD++E  Y AR+       +DSS  RGTG PY  VLG+GDV+KG+DL ++DMC GE R++ +P+ LAYGR GSK + +P         V + VELV +N
Sbjct:  259 RKGGSCEIKSRRGDVLEMNYEARVGGRDGQVYDSSAERGTGQPYMFVLGSGDVIKGVDLGMYDMCPGEVRELSVPSELAYGRLGSKLYRIPS-----GFRVWWKVELVRVN 364
[Close]
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Match: Peptidylprolyl (isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U229_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.340e-18
Identity = 94/297 (31.65%), Postives = 132/297 (44.44%), Query Frame = 2 
Query:  566 YVVQSDEVGVLF-GDGPIGIKLGDNPLKASGVCRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKPAERLEPKEVAELIRLSPR---------PMEIVFRDP----ELLGRRLQAEADRKAEAVKRSKQKAAADAASPEXXXXXXGDSATATTAVDPRSGSVGSGGGSASSGELRVTQVGKK--PEVCGTRTKAGDLIEFRYSARLASDLSVEFD--SSDRRGTGLPYAIVLGN---GDVVKGLDLSLFDMCVGERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSIN 1393
            + V+ DE  V F    P+G+ L D     +G  R YV++ L GSQA  +  +R    V AV GK  E L  K V +LIR +            + + FRDP    ELL                             E      G+ A  +T + P++           + E +   V K   PE+C T  K GDL+E +Y+ RL     ++    S+  RG       VLG    G V KG DL+L   CVGE+R+I+ P+ LA+G KG K  G+PPD     A +V+ VE++ IN
Sbjct:  113 HAVKDDEYDVAFDAKQPLGLALED--FGQNGKYRTYVSKTLRGSQATSK-GIRIPALVVAVNGKNVEGLPRKMVVQLIRDAQEGRNGMGEGSSLMVTFRDPAKFMELLS----------------------------EKSTPGGGEGAEISTQLAPQT----------QAREAQTLTVKKTYVPEICQTGAKYGDLLEIKYATRLEDGTFLDATGVSTPGRGGDSTLYFVLGEQVAGTVPKGWDLALVGACVGEKRRIKTPSVLAFGAKGLKRKGIPPD-----ATIVYDVEVIGIN 363
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig967.17770.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidylprolyl4.500e-30696.03isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS... [more]
Peptidylprolyl1.670e-4439.60isomerase n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
Peptidylprolyl1.700e-2748.74isomerase n=1 Tax=Asterionellopsis glacialis TaxID... [more]
Peptidylprolyl9.300e-2449.56isomerase n=1 Tax=Chrysochromulina tobinii TaxID=1... [more]
Peptidylprolyl2.410e-2231.15isomerase n=1 Tax=Diacronema lutheri TaxID=2081491... [more]
Peptidylprolyl4.470e-2245.95isomerase n=1 Tax=Fistulifera solaris TaxID=151956... [more]
Peptidylprolyl2.130e-2047.32isomerase n=1 Tax=Haptolina ericina TaxID=156174 R... [more]
Peptidylprolyl1.770e-1941.60isomerase n=1 Tax=Grammatophora oceanica TaxID=210... [more]
Peptidylprolyl3.990e-1944.14isomerase n=1 Tax=Trieres chinensis TaxID=1514140 ... [more]
Peptidylprolyl3.340e-1831.65isomerase n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig967contigEcto-sp9_F_contig967:11834..17111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score859.0
Seed ortholog evalue1.1e-246
Seed eggNOG ortholog2880.D8LST8
KEGG koko:K09569
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048856,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0545@1,KOG0549@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSecreted FKBP domain protein
Ec32 orthologEc-15_002640.1
Exons8
Model size2178
Cds size1440
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig967.17770.1prot_Ecto-sp9_F_contig967.17770.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig967 11892..16431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.8772001-UTR-Ecto-sp9_F_contig967:11833..118911622931054.8772001-UTR-Ecto-sp9_F_contig967:11833..11891Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig967 11834..11891 +
1692279011.6048055-UTR-Ecto-sp9_F_contig967:11833..118911692279011.6048055-UTR-Ecto-sp9_F_contig967:11833..11891Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig967 11834..11891 +
1622931055.0273192-UTR-Ecto-sp9_F_contig967:16431..171111622931055.0273192-UTR-Ecto-sp9_F_contig967:16431..17111Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig967 16432..17111 +
1692279011.6985147-UTR-Ecto-sp9_F_contig967:16431..171111692279011.6985147-UTR-Ecto-sp9_F_contig967:16431..17111Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig967 16432..17111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.890754-CDS-Ecto-sp9_F_contig967:11891..124191622931054.890754-CDS-Ecto-sp9_F_contig967:11891..12419Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 11892..12419 +
1692279011.6158547-CDS-Ecto-sp9_F_contig967:11891..124191692279011.6158547-CDS-Ecto-sp9_F_contig967:11891..12419Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 11892..12419 +
1622931054.904048-CDS-Ecto-sp9_F_contig967:12977..130701622931054.904048-CDS-Ecto-sp9_F_contig967:12977..13070Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 12978..13070 +
1692279011.6257384-CDS-Ecto-sp9_F_contig967:12977..130701692279011.6257384-CDS-Ecto-sp9_F_contig967:12977..13070Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 12978..13070 +
1622931054.9170249-CDS-Ecto-sp9_F_contig967:13766..139181622931054.9170249-CDS-Ecto-sp9_F_contig967:13766..13918Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 13767..13918 +
1692279011.6363828-CDS-Ecto-sp9_F_contig967:13766..139181692279011.6363828-CDS-Ecto-sp9_F_contig967:13766..13918Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 13767..13918 +
1622931054.9442272-CDS-Ecto-sp9_F_contig967:14417..144541622931054.9442272-CDS-Ecto-sp9_F_contig967:14417..14454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 14418..14454 +
1692279011.6480258-CDS-Ecto-sp9_F_contig967:14417..144541692279011.6480258-CDS-Ecto-sp9_F_contig967:14417..14454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 14418..14454 +
1622931054.9597583-CDS-Ecto-sp9_F_contig967:14713..149611622931054.9597583-CDS-Ecto-sp9_F_contig967:14713..14961Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 14714..14961 +
1692279011.6577275-CDS-Ecto-sp9_F_contig967:14713..149611692279011.6577275-CDS-Ecto-sp9_F_contig967:14713..14961Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 14714..14961 +
1622931054.9743662-CDS-Ecto-sp9_F_contig967:15577..156771622931054.9743662-CDS-Ecto-sp9_F_contig967:15577..15677Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 15578..15677 +
1692279011.6670418-CDS-Ecto-sp9_F_contig967:15577..156771692279011.6670418-CDS-Ecto-sp9_F_contig967:15577..15677Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 15578..15677 +
1622931054.9918659-CDS-Ecto-sp9_F_contig967:15938..160701622931054.9918659-CDS-Ecto-sp9_F_contig967:15938..16070Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 15939..16070 +
1692279011.6762066-CDS-Ecto-sp9_F_contig967:15938..160701692279011.6762066-CDS-Ecto-sp9_F_contig967:15938..16070Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 15939..16070 +
1622931055.008914-CDS-Ecto-sp9_F_contig967:16281..164311622931055.008914-CDS-Ecto-sp9_F_contig967:16281..16431Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 16282..16431 +
1692279011.685216-CDS-Ecto-sp9_F_contig967:16281..164311692279011.685216-CDS-Ecto-sp9_F_contig967:16281..16431Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig967 16282..16431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig967.17770.1

>prot_Ecto-sp9_F_contig967.17770.1 ID=prot_Ecto-sp9_F_contig967.17770.1|Name=mRNA_Ecto-sp9_F_contig967.17770.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=480bp
MPIFHLVGGFLLVSFWHSAGAFRTGAALAQRGCERTRGKHDRMCREIEPC
SAGRRSLSAGVSKGGWCASPQDSTSGPREALAATSSAAVATMAGSSTEAV
GRCGATAVSLTRNQLISSMATAAAGFLLAPWQASAADVETTLVSGAASTG
PAAAQGEVGGGVEEVAAAKYVVQSDEVGVLFGDGPIGIKLGDNPLKASGV
CRVYVTEVLTGSQAIRQANLRAGFGVAAVGGKPAERLEPKEVAELIRLSP
RPMEIVFRDPELLGRRLQAEADRKAEAVKRSKQKAAADAASPETAAPDTG
DSATATTAVDPRSGSVGSGGGSASSGELRVTQVGKKPEVCGTRTKAGDLI
EFRYSARLASDLSVEFDSSDRRGTGLPYAIVLGNGDVVKGLDLSLFDMCV
GERRKIEIPARLAYGRKGSKAFGVPPDDGTGSADVVFGVELVSINFSINA
SDARDNFYTDDACDAAAVAAGNASGQCKK*
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mRNA from alignment at Ecto-sp9_F_contig967:11834..17111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig967.17770.1 ID=mRNA_Ecto-sp9_F_contig967.17770.1|Name=mRNA_Ecto-sp9_F_contig967.17770.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5278bp|location=Sequence derived from alignment at Ecto-sp9_F_contig967:11834..17111+ (Ectocarpus species9 EcSCA_722f female)
AGCCGATCCATAAAGCCATAGTACTGCTCCGCCCTTCTCCATTGTCCGGT
GTTGACCAATGCCGATATTCCACCTCGTGGGTGGTTTCCTCTTGGTGTCG
TTTTGGCATTCTGCCGGAGCTTTCCGGACTGGCGCGGCCTTGGCGCAGCG
AGGCTGCGAAAGGACCCGCGGCAAACATGACAGAATGTGCCGTGAAATTG
AACCTTGTTCTGCAGGGCGGCGATCGCTCAGTGCTGGCGTATCTAAAGGG
GGGTGGTGCGCTTCGCCTCAGGATAGCACCAGCGGCCCCAGGGAAGCTCT
TGCAGCCACAAGCAGCGCTGCTGTTGCAACCATGGCTGGTAGCAGCACGG
AGGCTGTTGGGAGATGCGGTGCAACTGCTGTGTCGCTGACTCGAAATCAG
CTAATTTCCTCGATGGCGACCGCGGCCGCGGGGTTCCTGTTGGCACCATG
GCAAGCCTCAGCAGCAGATGTGGAGACAACGCTGGTGTCGGGAGCAGCGA
GCACCGGGCCTGCGGCAGCGCAGGGGGAGGTCGGTGGGGGTGTGGAGGAG
GTGGCGGCGGCGAAGTACGTCGTGCAATCTGACGAGGTAAAGTGGAAAGC
GGGTTTTCGTCAAGGATTCAAGTGTGCCTTGATTACGTGCGGTACTATGT
ACCTATATAGCTTCTCAAGCTGTGAGGATCATCCACTGCAGATCCCGAAC
GTTTGCCAACAAACCCAATCGCCACAAAGTGGTAGGTAGACATGACAGCC
CACGGACTTCGGCCGGGAGTCTCACGGTCGACAGCCATCCTTGATGGCTT
GATTGCCAATTGACGAAACCAACCCCGCTGGCAACTGGTCAAACCTCTCT
GCAAGGGCCCAACACTCTTGAAACGCATTCGACGATATGATGGATAACGT
CGTACAAGTAGCGCCGGCAGTGAACAACTTGGCACATAATGAAGAAATTG
ACATAGCCTCTAAAACTCTAAATCTAGAACTTGAGACTTTGTGAGCTGAC
GTCTACACTAAAACCTATATACCTCATTCGTAGCGAAACCCTAGTATCCC
AGCCTCGGCCGAAACTATACAGAGTTTCTCTACAGTAGGTCGGGCGCCTA
CTGCTGTAGACCCACACAGCAGTGTTTTTTCGTTGGTGGGACAGGTCGGC
GTGCTCTTTGGAGACGGGCCCATCGGCATCAAGCTCGGAGACAACCCTCT
CAAGGCTTCGGGGGTTTGCAGGGTCTACGTTACGGAGGTAAAGGCCGGAA
AAAAGGTGGAAGCGTTTTACTACTACCACAAAAAAAAACTTGGTTTAATG
CGGTGTAACTAGCAGGCGACCACGGTTCTTTAGATACTCATAGTTTCTAC
GGCAGAACTAGCAGACGACCACGGTTCTTTTGGATACATAGGCTCGGCTG
ACACGGCAGAACATGGGATGCAATCAGCCAGGGCAGTAGCACTTTTTTCG
CCCACTGCTGTTCGGGAAATTGGCTGGAAAGGAGAAACGTAATTTTAGGC
CTCGTGGGGTAGTTTAGTCTAGTGGGGGAAAAGAGGGCCTCCTAGCCTGC
GTTGGTTGATGGCAACGTTAGTCCATTGCGACGTGCGCCATCAGTCGGCT
CGTGAGACTTGTGTGGGGCACTCAGCATCAGTCACTCGCGGTGTCGTATC
AGCAGCTACGGCAGGACCCGCAGACGGGTAGTATTTCCAATCCTGGCGGT
ACTTTTCGTAAGCGTGCATCGTGTGAGTCCCTTTGCGTGGAGATCGTTAC
GGCTTACTAACTCGTGGTACCACATATCGCCGCTGCGAAATCAGAGTCAT
TTCTGCCTCCACCCACGAAGGCGGTAAACGCCAGATGCAGCGTGAGAGGC
AAGGCGTGTGAGACTCGCGATCCGACGTTCCCAACAACGCTATAGACGCT
GCTGCGCCTCCTATCTCTGTGCGAAAAATTAAGGTGCTAACGGGATCGCA
AGCGATACGCCAAGCAAACCTCCGGGCAGGGTTCGGGGTGGCCGCGGTGG
GGGGCAAGCCTGCGGAAAGGCTTGAGCCGAAGGAGGTGGCGGAGCTCATC
CGGTTGTCGCCTCGGCCCATGGAGATCGTCTTCAGGTGCGAGTCTAACCC
CCCGAGATGCTGGGCACCTATTTCGAAGTACGATTTTTCAGGCCACAAGG
TGCTTGTTTCACGCAGGGTTTACACCAAGAGAGACCGCCTCCTCAAAGTT
AGGGCTTACCGTATTTTTTGTAAAGGGAGCTGTCGTTCAGCCCTGCAAGC
ACGCCGAACGGGTTGGTTACGTAAGCTGTGAAATGTTTTCGCGAGTGTAA
TGGTGACCATGTCGTCTCGCCTTATCTAGACTTGTGGCCAATGTGAGTCC
GCTGCTTCTGCCGACGCTGTTTCTGCCGACGCTGTTCGTACTCGAATACG
GTTCTCCTTCTCTCCTTTTGGTTTTAAAAGCGCGGGTGCATGATCTTCGT
CGCAGTGGCATTCGGCCACGCCTTGCGGGCGGGACCGACTTGTGAGAATG
GGGTCGATTTCACCGGCACCCAACGCCCTCTGTGTGATAGTCGCGTGTCC
GTGTTATCTTCTCTCGGTGTTGTTTTCTTGGCAGGGACCCCGAGTTGCTT
GGTCGACGACTGCAAGCCGAGGTGAGCAGAGCGGAGGCGTGTTTTGTAGT
GAAACTGTCGCGATGCAAGCCTCGTTCGTAGCCAACATCTTGTGTAGCGT
CCTGCGGACGAGGACGGGGCGCTTGAGTGGCGTCCAGTAGCAGTTAGGTA
CAGCAGTATCTGGCGTTCTCCGATCGAATCCAACCGCTGATCTTCACGCA
CGGGGAAGACAGGAAAGGGACTCACGGCCCTAACTTGACCTGATGTTCTT
TTTCTCGTGGCTGTTCCGTCGAACACCCAGGCAGACAGGAAAGCGGAGGC
CGTGAAGCGGAGCAAGCAGAAGGCGGCCGCCGACGCGGCATCCCCGGAGA
CGGCGGCTCCGGACACGGGAGATTCAGCAACAGCGACGACGGCCGTTGAC
CCTCGCAGCGGCAGCGTCGGCAGTGGCGGCGGCAGCGCCTCCTCGGGGGA
GCTGAGGGTGACGCAGGTGGGCAAGAAGCCGGAGGTGTGCGGCACAAGGA
CTAAGGCGGGCGACTTGATCGAGTTCAGGTGCGGCGGCGGTTTTTTCTTT
TGGTTTTTTCTTTTGACGGACGACGGTATCCGGCCTATAGTGAAGTAACA
TGTAGCGGGCAGCCAGCCTTTGCAAATGTTGCGATTGTTCCTCTCGGTTC
TGTTCAGTTTCGGATTTTGACTTTTCTTGGGTGCTGGTGGTTCCCTTTTG
GTGTTATTTTGGGGGGCTTGCGCCCTGTACGTAGGCAGCGGTCAACGGGG
ATCGGCAGGCGGTACCGCGAGTGGGTGATACGGGTACCTCTGGATATTTC
GATGTTTCTTCATGTCCGTCTTCGTGTTTTCCCTTCGTACCAGTACCTTC
CCCATGACTTCCTCTTCCCCTATCCTTTTTTCCGTTGGTGCATCCTTGGA
TTGCTAGAGCACGTAGCGACAGGGTTTGCCATCGTTGCTAGTTGCCTTAA
AGTTACTTTTGGAAGGCGTTTTTTTTTTGTGTGCCTACACCGCCATATGG
TGGAAAGAAAGATGTCGTCTTCGGTGCAAAGTGAGGGTGTTGGCACACTC
AAATTTATCGGTTCTCTGCTTCTGCCTGCTTCTGCTGCTGCATGCGGCTG
CTGGTGCGGATGCTGATCGAAATTCCCGGACCGACTTAATCCAGGTACTC
TGCACGCTTGGCGAGCGATCTGTCGGTGGAGTTTGATTCCAGCGACCGCA
GGGGGACGGGCCTTCCATATGCGATCGTCCTGGGGAACGGCGATGTGAGA
CTACAACCCCGACTCAAGTTTCCGACAGTGTGGGAGGATGCACTCGTGCG
AAGGGGGAAAACATCTGGTAGAGAGTTTACCACCCTGCCGTGCATTCACA
GACCCCCCGTTGCCCCCTACGATATTGCCCATCTTTGCGATCGCCATCGC
GCCTTTACCGGAGTTGTAGGGTTAGTCATCGTCTGCTAGGTTTCGTCCGC
GCAGTGGTTATTCTTGCGGAGCAGAAAACTTTGCTCTTCCTCGATTTTAT
AACAGGTGGTAAAAGGCTTGGATTTGTCACTGTTCGACATGTGCGTCGGC
GAGCGGAGAAAGATAGAGATTCCTGCCCGCCTGGCTTACGGGAGGAAGGG
GAGCAAGGCCTTCGGAGTGCCTCCGGATGACGGAACGGTGAGAGAAACAA
CCAACACACCTTGGTGTCCCCAACAAGCAGGAACATTTGCTTTGTGTATG
CAGGTCCGTTTTCCCTGTGGTATCGTTCTTTCGGTCGTTCATTCCATCCC
ATCACCCACCCACCCCCCCTGTTTTCGGTGTCCCATAACCTTCGTCCATG
CCCACCGGTACTTCTCCACACGTAACAACGACGACGACTTAAAAAAAGGG
CTCCGCCGACGTAGTGTTCGGGGTCGAGCTCGTGAGCATCAACTTCTCGA
TCAACGCGTCGGACGCGAGGGACAACTTCTACACGGACGATGCTTGCGAC
GCGGCCGCCGTCGCCGCCGGAAACGCCAGCGGGCAGTGCAAGAAATGATG
AGCGTGGAAAACAGACAGCCAAGAGGGACTCGCTTCGCTCCGCTTCGGAT
GTGCATACAACTTGTTTCGAAACGCTGCCGACACATAATCCACAGTGGTG
CTGTTCGTTGCGAGACTTTTCACAGAGGTATTGGTCGGCCGGTTAGAGCG
CTCGATTCTGAACGGCAGATGGTTTTATATGTCGTACGTGACTGGTGACT
GGCGGCACCGGTATTTTTTCGACCAACAAGTGGTTGTGCAGGGGGGTACG
CAGAAGGTGATTTCTCCGTGGAAGGGGGGCATGACGAATTGTCGCCTTCA
TCCTCTTGTGTTAACTACAGAGCGCGCGTCCAAGGTTGCACGGAGAAAGC
AAGTGCTGCTGGGACGAAATGACTGCGGCCGTCTTCCGGCTTTATGTAGT
GGGGAAGAAGCACGGAGACAGATGTGTCACAGGTCGTGCTGAACACGAAG
AAGGTGCATCACCGTCAGAGACAGCTGATGAATTCCCCAGTACGTACGTG
CCCGTTCGGCGCGTACGCGAAGGGCTCCTCCGCATTCTCGCGCGCCCGGT
GTCTCTGGCGGCGAAAAACCCGTATCATCTCTTGTAGTCGAAATGAGAAA
AGCAAGCACTTCACTTGCACGACAGGAGAATTTGGTAGCGTTATTTACGG
CGATGCGGAATGTCAAAAAGAAAGAAGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig967:11834..17111+

>mRNA_Ecto-sp9_F_contig967.17770.1 ID=mRNA_Ecto-sp9_F_contig967.17770.1|Name=mRNA_Ecto-sp9_F_contig967.17770.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2880bp|location=Sequence derived from alignment at Ecto-sp9_F_contig967:11834..17111+ (Ectocarpus species9 EcSCA_722f female)
ATGCCGATATTCCACCTCGTGGGTGGTTTCCTCTTGGTGTCGTTTTGGCA
TTCTGCCGGAGCTTTCCGGACTGGCGCGGCCTTGGCGCAGCGAGGCTGCG
AAAGGACCCGCGGCAAACATGACAGAATGTGCCGTGAAATTGAACCTTGT
TCTGCAGGGCGGCGATCGCTCAGTGCTGGCGTATCTAAAGGGGGGTGGTG
CGCTTCGCCTCAGGATAGCACCAGCGGCCCCAGGGAAGCTCTTGCAGCCA
CAAGCAGCGCTGCTGTTGCAACCATGGCTGGTAGCAGCACGGAGGCTGTT
GGGAGATGCGGTGCAACTGCTGTGTCGCTGACTCGAAATCAGCTAATTTC
CTCGATGGCGACCGCGGCCGCGGGGTTCCTGTTGGCACCATGGCAAGCCT
CAGCAGCAGATGTGGAGACAACGCTGGTGTCGGGAGCAGCGAGCACCGGG
CCTGCGGCAGCGCAGGGGGAGGTCGGTGGGGGTGTGGAGGAGGTGGCGGC
GGCGAAGTACGTCGTGCAATCTGACGAGATGCCGATATTCCACCTCGTGG
GTGGTTTCCTCTTGGTGTCGTTTTGGCATTCTGCCGGAGCTTTCCGGACT
GGCGCGGCCTTGGCGCAGCGAGGCTGCGAAAGGACCCGCGGCAAACATGA
CAGAATGTGCCGTGAAATTGAACCTTGTTCTGCAGGGCGGCGATCGCTCA
GTGCTGGCGTATCTAAAGGGGGGTGGTGCGCTTCGCCTCAGGATAGCACC
AGCGGCCCCAGGGAAGCTCTTGCAGCCACAAGCAGCGCTGCTGTTGCAAC
CATGGCTGGTAGCAGCACGGAGGCTGTTGGGAGATGCGGTGCAACTGCTG
TGTCGCTGACTCGAAATCAGCTAATTTCCTCGATGGCGACCGCGGCCGCG
GGGTTCCTGTTGGCACCATGGCAAGCCTCAGCAGCAGATGTGGAGACAAC
GCTGGTGTCGGGAGCAGCGAGCACCGGGCCTGCGGCAGCGCAGGGGGAGG
TCGGTGGGGGTGTGGAGGAGGTGGCGGCGGCGAAGTACGTCGTGCAATCT
GACGAGGTCGGCGTGCTCTTTGGAGACGGGCCCATCGGCATCAAGCTCGG
AGACAACCCTCTCAAGGCTTCGGGGGTTTGCAGGGTCTACGTTACGGAGG
TCGGCGTGCTCTTTGGAGACGGGCCCATCGGCATCAAGCTCGGAGACAAC
CCTCTCAAGGCTTCGGGGGTTTGCAGGGTCTACGTTACGGAGGTGCTAAC
GGGATCGCAAGCGATACGCCAAGCAAACCTCCGGGCAGGGTTCGGGGTGG
CCGCGGTGGGGGGCAAGCCTGCGGAAAGGCTTGAGCCGAAGGAGGTGGCG
GAGCTCATCCGGTTGTCGCCTCGGCCCATGGAGATCGTCTTCAGGTGCTA
ACGGGATCGCAAGCGATACGCCAAGCAAACCTCCGGGCAGGGTTCGGGGT
GGCCGCGGTGGGGGGCAAGCCTGCGGAAAGGCTTGAGCCGAAGGAGGTGG
CGGAGCTCATCCGGTTGTCGCCTCGGCCCATGGAGATCGTCTTCAGGGAC
CCCGAGTTGCTTGGTCGACGACTGCAAGCCGAGGGACCCCGAGTTGCTTG
GTCGACGACTGCAAGCCGAGGCAGACAGGAAAGCGGAGGCCGTGAAGCGG
AGCAAGCAGAAGGCGGCCGCCGACGCGGCATCCCCGGAGACGGCGGCTCC
GGACACGGGAGATTCAGCAACAGCGACGACGGCCGTTGACCCTCGCAGCG
GCAGCGTCGGCAGTGGCGGCGGCAGCGCCTCCTCGGGGGAGCTGAGGGTG
ACGCAGGTGGGCAAGAAGCCGGAGGTGTGCGGCACAAGGACTAAGGCGGG
CGACTTGATCGAGTTCAGGCAGACAGGAAAGCGGAGGCCGTGAAGCGGAG
CAAGCAGAAGGCGGCCGCCGACGCGGCATCCCCGGAGACGGCGGCTCCGG
ACACGGGAGATTCAGCAACAGCGACGACGGCCGTTGACCCTCGCAGCGGC
AGCGTCGGCAGTGGCGGCGGCAGCGCCTCCTCGGGGGAGCTGAGGGTGAC
GCAGGTGGGCAAGAAGCCGGAGGTGTGCGGCACAAGGACTAAGGCGGGCG
ACTTGATCGAGTTCAGGTACTCTGCACGCTTGGCGAGCGATCTGTCGGTG
GAGTTTGATTCCAGCGACCGCAGGGGGACGGGCCTTCCATATGCGATCGT
CCTGGGGAACGGCGATGTACTCTGCACGCTTGGCGAGCGATCTGTCGGTG
GAGTTTGATTCCAGCGACCGCAGGGGGACGGGCCTTCCATATGCGATCGT
CCTGGGGAACGGCGATGTGGTAAAAGGCTTGGATTTGTCACTGTTCGACA
TGTGCGTCGGCGAGCGGAGAAAGATAGAGATTCCTGCCCGCCTGGCTTAC
GGGAGGAAGGGGAGCAAGGCCTTCGGAGTGCCTCCGGATGACGGAACGGT
GGTAAAAGGCTTGGATTTGTCACTGTTCGACATGTGCGTCGGCGAGCGGA
GAAAGATAGAGATTCCTGCCCGCCTGGCTTACGGGAGGAAGGGGAGCAAG
GCCTTCGGAGTGCCTCCGGATGACGGAACGGGCTCCGCCGACGTAGTGTT
CGGGGTCGAGCTCGTGAGCATCAACTTCTCGATCAACGCGTCGGACGCGA
GGGACAACTTCTACACGGACGATGCTTGCGACGCGGCCGCCGTCGCCGCC
GGAAACGCCAGCGGGCAGTGCAAGAAATGAGGCTCCGCCGACGTAGTGTT
CGGGGTCGAGCTCGTGAGCATCAACTTCTCGATCAACGCGTCGGACGCGA
GGGACAACTTCTACACGGACGATGCTTGCGACGCGGCCGCCGTCGCCGCC
GGAAACGCCAGCGGGCAGTGCAAGAAATGA
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