mRNA_Ecto-sp9_F_contig966.17762.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig966.17762.1
Unique NamemRNA_Ecto-sp9_F_contig966.17762.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH54_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.240e-28
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:   55 MSSRKAAKYNDQGQRCCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRC 219
            MSSRKAAKYN+QGQRCCLEDGCTT PSFGK+GSK+AEFCSQHAKPGMTNVKHKRC
Sbjct:    1 MSSRKAAKYNNQGQRCCLEDGCTTWPSFGKYGSKRAEFCSQHAKPGMTNVKHKRC 55
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BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.050e-18
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   55 MSSRKAAKYNDQGQRCCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRCGH 225
            ++S   A+Y+ +GQRCC E GCT  PS+G  GSKKAEFCS+H+KPGMTNV  KRCGH
Sbjct:   15 LASCTTARYHGKGQRCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRCGH 71
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BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.930e-17
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    4 KTSAPGTAGGGTAATHEMSSRKAAKYNDQGQRCCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNV 204
            KTS P T GGGTAA H  S R  A+ +DQGQR C E GCTT PS+G+   K A+FCSQH+KPGMTN+
Sbjct:   36 KTSPPETTGGGTAAIHTTSWRTKARCHDQGQRYCQERGCTTQPSYGQAYRKNAQFCSQHSKPGMTNL 102
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BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 7.510e-17
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 RKTSAPGT----AGGGTAATHEMSSRKA----AKYNDQGQRCCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRCGH 225
            RK SAPGT      GG AA H+ +++ +    A++  +GQ  C E GC+  PS+GK  SKKAEFCSQHAK GM NV HKRCGH
Sbjct:  206 RKGSAPGTKAQCGSGGAAAAHKTATKLSTPVIARHRGRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKRCGH 288
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BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL0_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 7.740e-17
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   70 AAKYNDQGQRCCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRCG 222
            AA+Y+DQGQRCC E GCTT PS+G+  SK A+ CSQH+KPGMTN+  KRCG
Sbjct:  145 AARYHDQGQRCCQEHGCTTQPSYGQAHSKNAQLCSQHSKPGMTNLTKKRCG 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.100e-16
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   61 SRKAAKYNDQGQR-CCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRCGHP 228
            SR   + + Q QR CC EDGCTT PS+G  G KKAEFCSQH KPGM N+  KRCGHP
Sbjct:   12 SRTPTRLHGQRQRLCCQEDGCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKRCGHP 68
[Close]
BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.170e-13
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   55 MSSRKAAKYNDQGQRCCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRC 219
             S+R  A+ N Q + CC E  CTT PSFG++GSKKAEFCS+H+KP M NV  K+C
Sbjct:   31 QSTRTTARRNGQKRACCQEPDCTTRPSFGEYGSKKAEFCSKHSKPAMVNVVDKKC 85
[Close]
BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.540e-12
Identity = 31/63 (49.21%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   37 TAATHEMSSRKAAKYNDQGQRCCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRCGH 225
            TAA    +   A ++  Q + CC E GCT  PS+G  GSKK EFC+QHAK GM N++ +RC H
Sbjct:   87 TAAPQTSTPMIARRHGQQWRPCCKEHGCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRCDH 149
[Close]
BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.210e-12
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   46 THEMSSRKAAKYNDQGQRCCLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRCGH 225
            T  +S+R   +++  G RCC EDGC+    FG  GSKKAEFCSQHA+P M NV  K CGH
Sbjct:  146 TASLSTRATTRHSGPG-RCCQEDGCSRQRRFGMAGSKKAEFCSQHAEPDMVNVVTKPCGH 204
[Close]
BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.280e-7
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:  103 CLEDGCTTGPSFGKFGSKKAEFCSQHAKPGMTNVKHKRC 219
            C  + CT  P++G  GSKK EFCSQHA+ GM NV +KRC
Sbjct:   64 CGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig966.17762.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
EsV-1-73.240e-2892.73n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-71.050e-1864.91n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
EsV-1-72.930e-1762.69n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-77.510e-1754.22n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized7.740e-1768.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.100e-1664.91protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.170e-1358.18protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-72.540e-1249.21n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized4.210e-1255.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.280e-758.97protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig966contigEcto-sp9_F_contig966:20383..21682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.5e-24
Seed eggNOG ortholog2880.D7FH54
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.8807812-CDS-Ecto-sp9_F_contig966:20382..204391622931053.8807812-CDS-Ecto-sp9_F_contig966:20382..20439Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig966 20383..20439 +
1692279011.1034536-CDS-Ecto-sp9_F_contig966:20382..204391692279011.1034536-CDS-Ecto-sp9_F_contig966:20382..20439Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig966 20383..20439 +
1622931053.8967655-CDS-Ecto-sp9_F_contig966:21475..216821622931053.8967655-CDS-Ecto-sp9_F_contig966:21475..21682Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig966 21476..21682 +
1692279011.1181734-CDS-Ecto-sp9_F_contig966:21475..216821692279011.1181734-CDS-Ecto-sp9_F_contig966:21475..21682Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig966 21476..21682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig966.17762.1prot_Ecto-sp9_F_contig966.17762.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig966 20383..21682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig966.17762.1

>prot_Ecto-sp9_F_contig966.17762.1 ID=prot_Ecto-sp9_F_contig966.17762.1|Name=mRNA_Ecto-sp9_F_contig966.17762.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
RKTSAPGTAGGGTAATHEMSSRKAAKYNDQGQRCCLEDGCTTGPSFGKFG
SKKAEFCSQHAKPGMTNVKHKRCGHPGCTKQPSYGKAG
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mRNA from alignment at Ecto-sp9_F_contig966:20383..21682+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig966.17762.1 ID=mRNA_Ecto-sp9_F_contig966.17762.1|Name=mRNA_Ecto-sp9_F_contig966.17762.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1300bp|location=Sequence derived from alignment at Ecto-sp9_F_contig966:20383..21682+ (Ectocarpus species9 EcSCA_722f female)
CGGAAGACATCCGCACCAGGAACAGCGGGCGGTGGGACGGCGGCAACACA
CGAGATGGTGAGTGCTGTGGACCGTTCGTTCCTCTCGCGTTGCTATTCGA
ACCAGTCAAAATTGTGCGGTTGGACAGTACATGCTTTGCTCAGGGTGCGT
TTGCGGCGTCACTCACTCTTGACCTGCGTTCCGATCAGCGGATGATTGAT
GTTCAATTGGTCATGGTGTGGGTTCGGGAAGATTGCTGCCGGGCACCGGA
TCAGTAGTGCACAGCTGGCGGATCGAGCACCGGCGAAAGTGCTTTCCAGC
CTTCAGTCACCACTATGCCCTACAGAGGGCAAATCGGCGATGGTTGCATC
TCTAGCGAGCCTGCACCATGTGTGTTGACTCTGTTTCCGACGGTCCCTAC
AACTAGTCTCGAAAGGTTTGGTTTTGGGTGTGGTTGAGGAACGCCAAATT
GACAATACTGTACGCAGACTTAGGAATGCGCGGTTACCCTGCTGGTAGCC
GAGAAGCCACATGTGGACACAGTCACTTCGTGGTACCGACTTTATTGGTG
TATTGAGGAACAGGGTGTGTTCTGAGCGCAGTTGACTAAGCGAGGCAAGG
TCTCCCGTACATTCAAAATACCGCCTTTCCAATAGACGATGCGCGGCGGA
AACCTTCGGTAAGAAACCGAAGGTCGAGGTATTGTGGGAGGAGAACGCGC
CACCGACTGCACAGCGCTCTCAGAGTGTAGCTTACAAGGAAGACGTCTAG
TCAACGGCTTTGTCGATGGCGTTCTCGCGTGAGGCAACGAAATATGTTTT
CCGCACGGGACTGTCTTCCAAGGCTTCAAGTGAAGAGCATCGTGAAAAAA
CGCGCCGGGCACACAGTTTTGGTGGTGGAACACCGACCGCTGCTTCTACC
CCTGCGGCAAGCACGGGGCCGAATTCTGAACAATCTAGGATTGAGGCATG
GCGATCCTTTAGCGATATGTGTGATGAATTCACTGAATCTCTCGCTACGT
CCCAATGTCTCTGCCATGGGTGCTGAGAAATTGACCTATATTTACCTCTG
GAATGTTGGTTCCTCTTGATCGTGCTTGAAATCGTGCTTTCAGTCATCGC
GTAAAGCCGCCAAATATAATGACCAAGGGCAACGATGCTGTCTGGAAGAT
GGCTGTACCACGGGGCCATCGTTCGGCAAATTCGGCAGCAAGAAGGCAGA
GTTCTGTTCCCAGCACGCGAAGCCAGGAATGACTAACGTGAAACACAAGA
GGTGCGGTCATCCAGGGTGCACCAAGCAGCCGTCATACGGCAAAGCAGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig966:20383..21682+

>mRNA_Ecto-sp9_F_contig966.17762.1 ID=mRNA_Ecto-sp9_F_contig966.17762.1|Name=mRNA_Ecto-sp9_F_contig966.17762.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig966:20383..21682+ (Ectocarpus species9 EcSCA_722f female)
CGGAAGACATCCGCACCAGGAACAGCGGGCGGTGGGACGGCGGCAACACA
CGAGATGCGGAAGACATCCGCACCAGGAACAGCGGGCGGTGGGACGGCGG
CAACACACGAGATGTCATCGCGTAAAGCCGCCAAATATAATGACCAAGGG
CAACGATGCTGTCTGGAAGATGGCTGTACCACGGGGCCATCGTTCGGCAA
ATTCGGCAGCAAGAAGGCAGAGTTCTGTTCCCAGCACGCGAAGCCAGGAA
TGACTAACGTGAAACACAAGAGGTGCGGTCATCCAGGGTGCACCAAGCAG
CCGTCATACGGCAAAGCAGGCTCATCGCGTAAAGCCGCCAAATATAATGA
CCAAGGGCAACGATGCTGTCTGGAAGATGGCTGTACCACGGGGCCATCGT
TCGGCAAATTCGGCAGCAAGAAGGCAGAGTTCTGTTCCCAGCACGCGAAG
CCAGGAATGACTAACGTGAAACACAAGAGGTGCGGTCATCCAGGGTGCAC
CAAGCAGCCGTCATACGGCAAAGCAGGC
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