mRNA_Ecto-sp9_F_contig9659.17761.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9659.17761.1
Unique NamemRNA_Ecto-sp9_F_contig9659.17761.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9659.17761.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM7_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.760e-30
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    1 QVAKLGEYQQNNYYCHAPFPGALDSLAYKRPHRSELLAVQIITRNGDRAPCG--RYEN--TW-CINSTIF 195
            +VAKLG YQQNNYYCHAPFPGALDSLAYKRPHRSELLAVQIITRNGDRAPCG   +EN  TW C    +F
Sbjct:  106 EVAKLGVYQQNNYYCHAPFPGALDSLAYKRPHRSELLAVQIITRNGDRAPCGVLPFENNVTWNCDGPDLF 175
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9659.17761.1 vs.
Match: Histidine (phosphatase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6S8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.460e-12
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    4 VAKLGEYQQNNYYCHAPFPGALDSLAYKRPHRSELLAVQIITRNGDRAPC 153
            V+ L   +Q NYYCHA FPGALD+L Y  P  + L++VQ+ITR+GDRAPC
Sbjct:  121 VSSLPADEQWNYYCHASFPGALDTLNYTAPGEATLISVQVITRHGDRAPC 170
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9659.17761.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.760e-3080.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Histidine4.460e-1260.00phosphatase superfamily n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9659contigEcto-sp9_F_contig9659:236..904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_000680.1
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931053.8083913-CDS-Ecto-sp9_F_contig9659:235..2781622931053.8083913-CDS-Ecto-sp9_F_contig9659:235..278Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9659 236..278 -
1692279011.0791147-CDS-Ecto-sp9_F_contig9659:235..2781692279011.0791147-CDS-Ecto-sp9_F_contig9659:235..278Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9659 236..278 -
1622931053.8274128-CDS-Ecto-sp9_F_contig9659:749..9041622931053.8274128-CDS-Ecto-sp9_F_contig9659:749..904Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9659 750..904 -
1692279011.093168-CDS-Ecto-sp9_F_contig9659:749..9041692279011.093168-CDS-Ecto-sp9_F_contig9659:749..904Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9659 750..904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9659.17761.1prot_Ecto-sp9_F_contig9659.17761.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9659 236..904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9659.17761.1

>prot_Ecto-sp9_F_contig9659.17761.1 ID=prot_Ecto-sp9_F_contig9659.17761.1|Name=mRNA_Ecto-sp9_F_contig9659.17761.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=66bp
QVAKLGEYQQNNYYCHAPFPGALDSLAYKRPHRSELLAVQIITRNGDRAP
CGRYENTWCINSTIF*
back to top

mRNA from alignment at Ecto-sp9_F_contig9659:236..904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9659.17761.1 ID=mRNA_Ecto-sp9_F_contig9659.17761.1|Name=mRNA_Ecto-sp9_F_contig9659.17761.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=669bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9659:236..904- (Ectocarpus species9 EcSCA_722f female)
CAGGTGGCAAAACTCGGAGAATACCAGCAGAACAACTACTACTGCCACGC
GCCGTTCCCAGGAGCGCTTGACTCGCTGGCGTACAAGCGTCCCCACCGGA
GCGAGCTTCTTGCGGTGCAGATCATCACCCGAAACGGCGATCGGGCTCCT
TGCGGGTGAGCTAGAAAATAGGGTTAGGGTTTGTTGTGTATGTTGTGACC
ACGCTTGAGCTACAATTTTGCGGGTGAGCTAGACAAAGGAGCGTGTGTGT
TGTGACCACGCTTAATCTGCAACTTTGCGGGTGAGCTAGACAAAGAAGGG
TACGTGTTGTGACCGCTATGCTACAACTTTGCGGGTGAGCTAGACAAAGA
AGTGTGCGTGTTGTGACCACGCCTATACTTCAACTTGCGGGAGGGCTAGA
AGATGTAGAAGCGTGTGTGTTGTGACCACGCCTATGCTACAATTTGTGGG
TGGGCTAGATCAAGAAGTGTGCGTGCTGTGACCACTTCGTAAAAGATGAT
GATTGTCGGTTGGCTGTTTTGTGAATTGGTTTTGCGCTGGCCTCGTTTTT
ATTCTTTTTCCGCTCTCTGTGCACAAAATCACATCTCTGAATGTGTTTAC
GGCAACCCACATCATGGTAAAACTAGAAGATACGAAAATACCTGGTGCAT
CAACTCAACGATTTTCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9659:236..904-

>mRNA_Ecto-sp9_F_contig9659.17761.1 ID=mRNA_Ecto-sp9_F_contig9659.17761.1|Name=mRNA_Ecto-sp9_F_contig9659.17761.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9659:236..904- (Ectocarpus species9 EcSCA_722f female)
CAGGTGGCAAAACTCGGAGAATACCAGCAGAACAACTACTACTGCCACGC
GCCGTTCCCAGGAGCGCTTGACTCGCTGGCGTACAAGCGTCCCCACCGGA
GCGAGCTTCTTGCGGTGCAGATCATCACCCGAAACGGCGATCGGGCTCCT
TGCGGCAGGTGGCAAAACTCGGAGAATACCAGCAGAACAACTACTACTGC
CACGCGCCGTTCCCAGGAGCGCTTGACTCGCTGGCGTACAAGCGTCCCCA
CCGGAGCGAGCTTCTTGCGGTGCAGATCATCACCCGAAACGGCGATCGGG
CTCCTTGCGGAAGATACGAAAATACCTGGTGCATCAACTCAACGATTTTC
TAGAAGATACGAAAATACCTGGTGCATCAACTCAACGATTTTCTAG
back to top