mRNA_Ecto-sp9_F_contig9645.17752.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9645.17752.1
Unique NamemRNA_Ecto-sp9_F_contig9645.17752.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9645.17752.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9645contigEcto-sp9_F_contig9645:92..676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.562763-CDS-Ecto-sp9_F_contig9645:91..4451622931052.562763-CDS-Ecto-sp9_F_contig9645:91..445Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9645 92..445 +
1692279010.515453-CDS-Ecto-sp9_F_contig9645:91..4451692279010.515453-CDS-Ecto-sp9_F_contig9645:91..445Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9645 92..445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.5754273-UTR-Ecto-sp9_F_contig9645:445..6761622931052.5754273-UTR-Ecto-sp9_F_contig9645:445..676Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9645 446..676 +
1692279010.523791-UTR-Ecto-sp9_F_contig9645:445..6761692279010.523791-UTR-Ecto-sp9_F_contig9645:445..676Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9645 446..676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9645.17752.1prot_Ecto-sp9_F_contig9645.17752.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9645 92..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9645.17752.1

>prot_Ecto-sp9_F_contig9645.17752.1 ID=prot_Ecto-sp9_F_contig9645.17752.1|Name=mRNA_Ecto-sp9_F_contig9645.17752.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=118bp
AKSGLFFLAGVTARGIRERCTRNNVIQLAENASKREIVEYFPAKVWSGCA
RRAREPRCSHRNVKKCIATVSGCRKGALGLLCSALVCPNGKTAAATGGGG
GPFFGEGFRPCGGDDDL*
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mRNA from alignment at Ecto-sp9_F_contig9645:92..676+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9645.17752.1 ID=mRNA_Ecto-sp9_F_contig9645.17752.1|Name=mRNA_Ecto-sp9_F_contig9645.17752.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=585bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9645:92..676+ (Ectocarpus species9 EcSCA_722f female)
GCAAAAAGTGGACTTTTTTTTTTGGCGGGTGTTACGGCACGCGGGATAAG
GGAACGATGCACGAGGAACAACGTTATCCAGCTCGCCGAAAACGCAAGCA
AGCGGGAAATTGTTGAGTATTTTCCGGCAAAGGTTTGGTCTGGTTGTGCT
CGCCGGGCGCGAGAACCTCGTTGCTCCCACAGGAATGTGAAGAAGTGTAT
CGCTACTGTTTCTGGTTGTAGGAAGGGCGCTCTTGGTCTTCTCTGCTCCG
CTCTTGTCTGCCCAAACGGAAAGACTGCAGCAGCGACTGGTGGGGGTGGT
GGTCCTTTTTTTGGCGAGGGGTTCCGTCCTTGCGGTGGGGACGATGACCT
ATAGGTAGAAGCGGCGACCCTCACGTAAGAAGTTGGTATGTATGCAGTCT
AGTGACATAGATCAGAAAAACTTGAGGGTTCGATTCTCACGAGAACGGCG
AGAACTTGAACCCCACCCACAATGAAACCTACATGTTCCCTGTTGATTTT
CCCACAGATTGTAAATTAAGAGCGAGTGTTGCGAAAAATAAGCGGATATT
TAGGTAGGCTAAACGTATCTAGAAGCCAAGAGCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9645:92..676+

>mRNA_Ecto-sp9_F_contig9645.17752.1 ID=mRNA_Ecto-sp9_F_contig9645.17752.1|Name=mRNA_Ecto-sp9_F_contig9645.17752.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9645:92..676+ (Ectocarpus species9 EcSCA_722f female)
GCAAAAAGTGGACTTTTTTTTTTGGCGGGTGTTACGGCACGCGGGATAAG
GGAACGATGCACGAGGAACAACGTTATCCAGCTCGCCGAAAACGCAAGCA
AGCGGGAAATTGTTGAGTATTTTCCGGCAAAGGTTTGGTCTGGTTGTGCT
CGCCGGGCGCGAGAACCTCGTTGCTCCCACAGGAATGTGAAGAAGTGTAT
CGCTACTGTTTCTGGTTGTAGGAAGGGCGCTCTTGGTCTTCTCTGCTCCG
CTCTTGTCTGCCCAAACGGAAAGACTGCAGCAGCGACTGGTGGGGGTGGT
GGTCCTTTTTTTGGCGAGGGGTTCCGTCCTTGCGGTGGGGACGATGACCT
ATAGGCAAAAAGTGGACTTTTTTTTTTGGCGGGTGTTACGGCACGCGGGA
TAAGGGAACGATGCACGAGGAACAACGTTATCCAGCTCGCCGAAAACGCA
AGCAAGCGGGAAATTGTTGAGTATTTTCCGGCAAAGGTTTGGTCTGGTTG
TGCTCGCCGGGCGCGAGAACCTCGTTGCTCCCACAGGAATGTGAAGAAGT
GTATCGCTACTGTTTCTGGTTGTAGGAAGGGCGCTCTTGGTCTTCTCTGC
TCCGCTCTTGTCTGCCCAAACGGAAAGACTGCAGCAGCGACTGGTGGGGG
TGGTGGTCCTTTTTTTGGCGAGGGGTTCCGTCCTTGCGGTGGGGACGATG
ACCTATAG
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