mRNA_Ecto-sp9_F_contig9634.17746.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9634.17746.1
Unique NamemRNA_Ecto-sp9_F_contig9634.17746.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9634.17746.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 8.260e-46
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 2 
Query:    2 MLRIVPADVESGDEWGSDTEADARDYGRFRRIAGADPETIQNALKLYPPRNPETRARIYDGLGLELPGDVSRGRSGS 232
            MLRIVPADVESGDEWGSD EADARDYGRFRRIAGADPETIQNALKLYPPRNPETRARIYDGLGLELPGDVSRGRS S
Sbjct:   40 MLRIVPADVESGDEWGSDAEADARDYGRFRRIAGADPETIQNALKLYPPRNPETRARIYDGLGLELPGDVSRGRSSS 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9634.17746.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.260e-4697.40protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9634contigEcto-sp9_F_contig9634:31..1128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9634.17746.1prot_Ecto-sp9_F_contig9634.17746.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9634 32..1128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.7844462-UTR-Ecto-sp9_F_contig9634:30..311622931051.7844462-UTR-Ecto-sp9_F_contig9634:30..31Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9634 31..31 +
1692279010.105419-UTR-Ecto-sp9_F_contig9634:30..311692279010.105419-UTR-Ecto-sp9_F_contig9634:30..31Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9634 31..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931051.8041255-CDS-Ecto-sp9_F_contig9634:31..1541622931051.8041255-CDS-Ecto-sp9_F_contig9634:31..154Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9634 32..154 +
1692279010.1299255-CDS-Ecto-sp9_F_contig9634:31..1541692279010.1299255-CDS-Ecto-sp9_F_contig9634:31..154Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9634 32..154 +
1622931051.818659-CDS-Ecto-sp9_F_contig9634:993..11281622931051.818659-CDS-Ecto-sp9_F_contig9634:993..1128Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9634 994..1128 +
1692279010.1435761-CDS-Ecto-sp9_F_contig9634:993..11281692279010.1435761-CDS-Ecto-sp9_F_contig9634:993..1128Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9634 994..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9634.17746.1

>prot_Ecto-sp9_F_contig9634.17746.1 ID=prot_Ecto-sp9_F_contig9634.17746.1|Name=mRNA_Ecto-sp9_F_contig9634.17746.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=86bp
MLRIVPADVESGDEWGSDTEADARDYGRFRRIAGADPETIQNALKLYPPR
NPETRARIYDGLGLELPGDVSRGRSGSTGGGGGDNG
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mRNA from alignment at Ecto-sp9_F_contig9634:31..1128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9634.17746.1 ID=mRNA_Ecto-sp9_F_contig9634.17746.1|Name=mRNA_Ecto-sp9_F_contig9634.17746.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1098bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9634:31..1128+ (Ectocarpus species9 EcSCA_722f female)
GATGCTGCGCATCGTACCCGCCGACGTGGAGTCCGGAGACGAGTGGGGCT
CCGACACGGAAGCGGACGCCCGCGACTACGGGCGATTCCGCCGCATCGCC
GGGGCTGACCCGGAAACGATCCAGGTACGTATTAATAGATGCATACATGT
AAAAAACCACGCACCACACGCACCGTTATCGTATGGATATCACACACGCC
GTGTCACACGTCCACACTCACCTAGTGTCGGCAGCACCAGGCCGTGTCGC
ACATCACACACACCCCTTGTATGGATAACAGCGGTCGTACAACAATACCG
ACGTAGTGTCCACTACGATGCACGCCTCAACAAGAAGAGAGTAGTGTGAG
GAAAACAGCCCCGAATTTGGTAATTTAGTTGCACAGATCGTCACACGAAC
ACCCTGGTGGGCAACAGCCCCACAACAGCAAAAACAATGTCGTCATGTCC
ACTTCGACGCACGCCCAGTCTCAACTGTATGGAAAAACAGGCCCGAATTG
TGGTACTTGCACATTATTGCTCACGGTGCTCTGGAAGGCTTGCACCCGAA
CTCACGCACCGTTGTTTTGGTCGTGTGTTGTACACAATACGCGCTTGCCG
TCCTGCTGTGTTGGAACACCGAGAATATCGGTTCTCTAGTCTCGACAAAC
ATGTGTACAAGTACTACGTACGGATTCGTGCCCTCGGCCCCCGGTTGGGT
TGGTTGGTTGTTATTCCGGAGCAGAAGGAGGTACTCGATACGAGGGTACT
GTAGAAGAGCATGTTTTTTTTGTCCTTGCGCACGCAGTATGTTACGTTAT
CGTCAAACAACACAGCAATAACAGCCACGACAACAACCACAACATTACCA
ACAACGACCACAACCATCACAAACAACATTAACAGCAACAACAACCTCTG
CCACAACCAACATCACAAGAAACCCTTTCCGCTCGCTCTTTTTTTTTCGC
CGCCGACCCTCAGAATGCCCTCAAGCTGTACCCTCCGCGCAACCCAGAGA
CGCGCGCCCGCATCTACGACGGCCTCGGCTTGGAACTCCCGGGCGATGTC
AGCCGGGGCCGAAGCGGCAGCACCGGCGGCGGCGGCGGCGACAACGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9634:31..1128+

>mRNA_Ecto-sp9_F_contig9634.17746.1 ID=mRNA_Ecto-sp9_F_contig9634.17746.1|Name=mRNA_Ecto-sp9_F_contig9634.17746.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9634:31..1128+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGCGCATCGTACCCGCCGACGTGGAGTCCGGAGACGAGTGGGGCTC
CGACACGGAAGCGGACGCCCGCGACTACGGGCGATTCCGCCGCATCGCCG
GGGCTGACCCGGAAACGATCCAGATGCTGCGCATCGTACCCGCCGACGTG
GAGTCCGGAGACGAGTGGGGCTCCGACACGGAAGCGGACGCCCGCGACTA
CGGGCGATTCCGCCGCATCGCCGGGGCTGACCCGGAAACGATCCAGAATG
CCCTCAAGCTGTACCCTCCGCGCAACCCAGAGACGCGCGCCCGCATCTAC
GACGGCCTCGGCTTGGAACTCCCGGGCGATGTCAGCCGGGGCCGAAGCGG
CAGCACCGGCGGCGGCGGCGGCGACAACGGCAATGCCCTCAAGCTGTACC
CTCCGCGCAACCCAGAGACGCGCGCCCGCATCTACGACGGCCTCGGCTTG
GAACTCCCGGGCGATGTCAGCCGGGGCCGAAGCGGCAGCACCGGCGGCGG
CGGCGGCGACAACGGC
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