mRNA_Ecto-sp9_F_contig963.17742.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig963.17742.1
Unique NamemRNA_Ecto-sp9_F_contig963.17742.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig963.17742.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G060_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 8.180e-7
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:    1 DDGTTINGTMIDAPEQDNSGDPAGVLSHMH 90
            DDGTTING MIDAPEQDNSGDPAG  +  H
Sbjct:    4 DDGTTINGIMIDAPEQDNSGDPAGFPATWH 33
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BLAST of mRNA_Ecto-sp9_F_contig963.17742.1 vs.
Match: Metacapase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK1_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 7.880e-5
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:    1 DDGTTINGTMIDAPEQDNSGDPAG 72
            DDGTTINGTMID PEQDNSGDP G
Sbjct:    3 DDGTTINGTMIDGPEQDNSGDPPG 26
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig963.17742.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.180e-780.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Metacapase7.880e-591.67n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig963contigEcto-sp9_F_contig963:465..1160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size204
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig963.17742.1prot_Ecto-sp9_F_contig963.17742.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig963 465..1133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.2122843-CDS-Ecto-sp9_F_contig963:464..5021622931050.2122843-CDS-Ecto-sp9_F_contig963:464..502Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig963 465..502 -
1692279009.32158-CDS-Ecto-sp9_F_contig963:464..5021692279009.32158-CDS-Ecto-sp9_F_contig963:464..502Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig963 465..502 -
1622931050.2284482-CDS-Ecto-sp9_F_contig963:741..8351622931050.2284482-CDS-Ecto-sp9_F_contig963:741..835Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig963 742..835 -
1692279009.338021-CDS-Ecto-sp9_F_contig963:741..8351692279009.338021-CDS-Ecto-sp9_F_contig963:741..835Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig963 742..835 -
1622931050.243534-CDS-Ecto-sp9_F_contig963:1088..11331622931050.243534-CDS-Ecto-sp9_F_contig963:1088..1133Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig963 1089..1133 -
1692279009.35648-CDS-Ecto-sp9_F_contig963:1088..11331692279009.35648-CDS-Ecto-sp9_F_contig963:1088..1133Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig963 1089..1133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931050.2585897-UTR-Ecto-sp9_F_contig963:1133..11601622931050.2585897-UTR-Ecto-sp9_F_contig963:1133..1160Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig963 1134..1160 -
1692279009.3677173-UTR-Ecto-sp9_F_contig963:1133..11601692279009.3677173-UTR-Ecto-sp9_F_contig963:1133..1160Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig963 1134..1160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig963.17742.1

>prot_Ecto-sp9_F_contig963.17742.1 ID=prot_Ecto-sp9_F_contig963.17742.1|Name=mRNA_Ecto-sp9_F_contig963.17742.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=59bp
MIDAPEQDNSGDPAGVLSHMHILRCRTPSLSMRVLAGHLEILVLAKVSGD
LAWASLLC*
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mRNA from alignment at Ecto-sp9_F_contig963:465..1160-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig963.17742.1 ID=mRNA_Ecto-sp9_F_contig963.17742.1|Name=mRNA_Ecto-sp9_F_contig963.17742.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=696bp|location=Sequence derived from alignment at Ecto-sp9_F_contig963:465..1160- (Ectocarpus species9 EcSCA_722f female)
GACGACGGCACCACCATCAACGGCACCATGATCGATGCTCCGGAACAGGA
CAACAGTGGCGACCCTGCTGGGGTGAGAAAGTTGCGCGGGGTTCATAAAT
CTGGTGTTGTAGCTGTTGTGCCGTTTTTTTTCGCAAAACGGTTTTCTTCC
TTTTGTAGTTGGCTCTCCCTTCCGGCTACTTTATTTCCATGTGAAAGGCT
TTCAAGATGGGCCCATGAAGGGTGCCTAAAGGGGCGGGGGTGCGCAAGTA
CAAGTGGGACGAGACTGGAAATATTTTGAACAAATGAATGTGGGGTGTTA
TTCTTTTACGTCTTTCCCACGGCAGGTCCTGTCGCATATGCATATACTTC
GATGTCGGACGCCATCATTGTCTATGCGTGTGCTTGCCGGCCATCTCGAG
ATCCTTGTCCTAGCGAAAGGTTAAATCCGTGTAGATTACAAGTATGCCGC
GCAAGGAAGGAAGGGCACAGCAGGCACGGCACGAAAGGGGCGACATACAA
GCGACATTTTTTTTTCAAGACTGGCAACACCCCTAAACCACACCTAGTCG
AAAGTAAGTTGGGATCTGACGCTGGTGCGTATAACAACAGGAGTGTGTGC
AGTTTTTGGCTGTTGTTGTATTTCTTGTCTTTTTTCCATTTACCGTCGTC
GCTGGCAGTTTCCGGCGACTTGGCATGGGCCTCCCTGCTCTGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig963:465..1160-

>mRNA_Ecto-sp9_F_contig963.17742.1 ID=mRNA_Ecto-sp9_F_contig963.17742.1|Name=mRNA_Ecto-sp9_F_contig963.17742.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp9_F_contig963:465..1160- (Ectocarpus species9 EcSCA_722f female)
ATGATCGATGCTCCGGAACAGGACAACAGTGGCGACCCTGCTGGGATGAT
CGATGCTCCGGAACAGGACAACAGTGGCGACCCTGCTGGGGTCCTGTCGC
ATATGCATATACTTCGATGTCGGACGCCATCATTGTCTATGCGTGTGCTT
GCCGGCCATCTCGAGATCCTTGTCCTAGCGAAAGGTCCTGTCGCATATGC
ATATACTTCGATGTCGGACGCCATCATTGTCTATGCGTGTGCTTGCCGGC
CATCTCGAGATCCTTGTCCTAGCGAAAGTTTCCGGCGACTTGGCATGGGC
CTCCCTGCTCTGCTGATTTCCGGCGACTTGGCATGGGCCTCCCTGCTCTG
CTGA
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