mRNA_Ecto-sp9_F_contig961.17728.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig961.17728.1
Unique NamemRNA_Ecto-sp9_F_contig961.17728.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF0_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.090e-48
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQFVKKFNLFNTNNM 252
            GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQFVKKFNLFNTNN+
Sbjct:  267 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQFVKKFNLFNTNNI 350
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BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD1_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 7.620e-48
Identity = 82/84 (97.62%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQFVKKFNLFNTNNM 252
            GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQF KKFNLFNTNN+
Sbjct:  242 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQFAKKFNLFNTNNI 325
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BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA96_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.220e-27
Identity = 54/86 (62.79%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGG--KPKVVELSTVPTERRDQFVKKFNLFNTNNM 252
            GKEY+FISNVDNLGAT+DL +LYH+ D EA+FA+E ++ TRAD  GGL+VGYG   KPK++ELS +  +  D F K+FNLFNTNN+
Sbjct:  256 GKEYVFISNVDNLGATIDLRLLYHVVDSEADFALEVVQSTRADNEGGLLVGYGDVVKPKLLELSQLSKDVLDDFKKRFNLFNTNNI 341
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BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=9 Tax=Oomycota TaxID=4762 RepID=K3X633_GLOUD)

HSP 1 Score: 105 bits (262), Expect = 8.470e-25
Identity = 48/86 (55.81%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQF--VKKFNLFNTNNM 252
            GKEYIFISNVDNLGATV+LD+LYH+ ++++EF +E  ++TRAD+ GG +V Y  KP ++E+S VP +  D+F  + KF  FNTNN+
Sbjct:  221 GKEYIFISNVDNLGATVNLDVLYHMINEDSEFVMEVTDKTRADIQGGTLVSYREKPHLLEISQVPPQHMDEFRSINKFQTFNTNNL 306
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BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase (Fragment) n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSU1_ACACA)

HSP 1 Score: 105 bits (262), Expect = 9.110e-25
Identity = 47/86 (54.65%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQF--VKKFNLFNTNNM 252
            GKEYIFISN DNLGATVDL++L H+ D E+E+ +E  ++TRAD+ GG ++ Y G+PK++E++ VP ++ D+F  +KKF +FNTNN+
Sbjct:  234 GKEYIFISNADNLGATVDLNILKHMADTESEYVMELTDKTRADVKGGTLIDYEGRPKLLEIAQVPADKVDEFKSIKKFKIFNTNNL 319
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BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PVU9_PHYPN)

HSP 1 Score: 104 bits (259), Expect = 1.150e-24
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQF--VKKFNLFNTNNM 252
            GKEYIFISNVDNLGATV+LDMLYH+ ++++EF +E  E+TRAD+ GG +V Y  KP ++E S VP    D F  + KF  FNTNN+
Sbjct:  138 GKEYIFISNVDNLGATVNLDMLYHMINEDSEFVMEVTEKTRADVQGGTLVSYKDKPHLLEASQVPPGHLDDFRAINKFETFNTNNL 223
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BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=3 Tax=Peronosporaceae TaxID=4777 RepID=M4BAY1_HYAAE)

HSP 1 Score: 105 bits (261), Expect = 1.310e-24
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQF--VKKFNLFNTNNM 252
            GKEYIFISNVDNLGATV+LDMLY++ ++++EF +E  E+TRAD+ GG +V Y  KP ++E S VP E  D F  + KF  FNTNN+
Sbjct:  242 GKEYIFISNVDNLGATVNLDMLYYMINEDSEFVMEVTEKTRADVQGGTLVSYKDKPHLLEASQVPPEHMDDFRAINKFETFNTNNL 327
[Close]
BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=25 Tax=Peronosporaceae TaxID=4777 RepID=D0NU40_PHYIT)

HSP 1 Score: 104 bits (259), Expect = 2.210e-24
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQF--VKKFNLFNTNNM 252
            GKEYIFISNVDNLGATV+LDMLYH+ ++++EF +E  E+TRAD+ GG +V Y  KP ++E S VP    D F  + KF  FNTNN+
Sbjct:  220 GKEYIFISNVDNLGATVNLDMLYHMINEDSEFVMEVTEKTRADVQGGTLVSYKDKPHLLEASQVPPGHLDDFRAINKFETFNTNNL 305
[Close]
BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CJP7_SAPPC)

HSP 1 Score: 103 bits (258), Expect = 2.780e-24
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQF--VKKFNLFNTNNM 252
            GKEYIFISNVDNLGATV+LD+LYH+ + ++EF +E  ++TRAD+ GG +V Y GKP ++E++ VPTE  ++F  + KF  FNTNN+
Sbjct:  204 GKEYIFISNVDNLGATVNLDILYHMINVDSEFMMEVTDKTRADVQGGTLVTYKGKPHLLEVNQVPTEHLEEFRSLHKFTKFNTNNL 289
[Close]
BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Match: UTP--glucose-1-phosphate (uridylyltransferase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H358_ACACA)

HSP 1 Score: 103 bits (256), Expect = 6.740e-24
Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVVGYGGKPKVVELSTVPTERRDQF--VKKFNLFNTNNM 252
            GKEYIFISNVDNLGATVD+++L H+ +   EF +E  ++TRAD+ GG ++ Y GKPK++E++ VP  + D+F  +KKF +FNTNN+
Sbjct:  252 GKEYIFISNVDNLGATVDVNILKHMVETNNEFIMEVTDKTRADIKGGTLIDYEGKPKLLEIAQVPENKVDEFKSIKKFKIFNTNNL 337
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig961.17728.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UTP--glucose-1-phosphate4.090e-4898.81uridylyltransferase n=1 Tax=Ectocarpus siliculosus... [more]
UTP--glucose-1-phosphate7.620e-4897.62uridylyltransferase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
UTP--glucose-1-phosphate1.220e-2762.79uridylyltransferase n=1 Tax=Tribonema minus TaxID=... [more]
UTP--glucose-1-phosphate8.470e-2555.81uridylyltransferase n=9 Tax=Oomycota TaxID=4762 Re... [more]
UTP--glucose-1-phosphate9.110e-2554.65uridylyltransferase (Fragment) n=2 Tax=Acanthamoeb... [more]
UTP--glucose-1-phosphate1.150e-2458.14uridylyltransferase n=2 Tax=Phytophthora parasitic... [more]
UTP--glucose-1-phosphate1.310e-2458.14uridylyltransferase n=3 Tax=Peronosporaceae TaxID=... [more]
UTP--glucose-1-phosphate2.210e-2458.14uridylyltransferase n=25 Tax=Peronosporaceae TaxID... [more]
UTP--glucose-1-phosphate2.780e-2456.98uridylyltransferase n=3 Tax=Saprolegniaceae TaxID=... [more]
UTP--glucose-1-phosphate6.740e-2454.65uridylyltransferase n=1 Tax=Acanthamoeba castellan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig961contigEcto-sp9_F_contig961:27517..27771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue9e-40
Seed eggNOG ortholog2880.D7FKF0
Preferred nameUGP2
KEGG rclassRC00002
KEGG koko:K00963,ko:K02987,ko:K17260,ko:K17491
KEGG ReactionR00289
KEGG Pathwayko00040,ko00052,ko00500,ko00520,ko01100,ko01130,ko03010,ko04138,ko04212,ko04530,ko04922,map00040,map00052,map00500,map00520,map01100,map01130,map03010,map04138,map04212,map04530,map04922
KEGG ModuleM00129,M00177,M00179,M00361,M00362,M00549
GOsGO:0000166,GO:0000271,GO:0003674,GO:0003824,GO:0003983,GO:0005488,GO:0005515,GO:0005536,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005984,GO:0005985,GO:0005991,GO:0005992,GO:0006011,GO:0006065,GO:0006073,GO:0006077,GO:0006078,GO:0006082,GO:0006091,GO:0006112,GO:0006139,GO:0006464,GO:0006486,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009250,GO:0009267,GO:0009277,GO:0009311,GO:0009312,GO:0009555,GO:0009605,GO:0009628,GO:0009651,GO:0009986,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010494,GO:0010941,GO:0010942,GO:0015980,GO:0016020,GO:0016036,GO:0016043,GO:0016051,GO:0016053,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019103,GO:0019255,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0030246,GO:0030312,GO:0030445,GO:0030587,GO:0031154,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032553,GO:0032557,GO:0032991,GO:0033036,GO:0033037,GO:0033554,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036094,GO:0036211,GO:0036296,GO:0036464,GO:0042221,GO:0042545,GO:0042594,GO:0042802,GO:0042995,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043413,GO:0043436,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046351,GO:0046394,GO:0046398,GO:0046483,GO:0046686,GO:0048029,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051273,GO:0051274,GO:0051641,GO:0051703,GO:0051704,GO:0051716,GO:0051748,GO:0052386,GO:0052543,GO:0052545,GO:0055086,GO:0055093,GO:0055114,GO:0065007,GO:0070085,GO:0070482,GO:0070569,GO:0070727,GO:0071496,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090406,GO:0090702,GO:0097159,GO:0097367,GO:0099120,GO:0120025,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG4284@1,KOG2638@2759
EC2.7.7.9
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01009,ko03011,ko03400,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931048.4078417-CDS-Ecto-sp9_F_contig961:27516..277711622931048.4078417-CDS-Ecto-sp9_F_contig961:27516..27771Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig961 27517..27771 +
1692279008.5302722-CDS-Ecto-sp9_F_contig961:27516..277711692279008.5302722-CDS-Ecto-sp9_F_contig961:27516..27771Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig961 27517..27771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig961.17728.1prot_Ecto-sp9_F_contig961.17728.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig961 27517..27771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig961.17728.1

>prot_Ecto-sp9_F_contig961.17728.1 ID=prot_Ecto-sp9_F_contig961.17728.1|Name=mRNA_Ecto-sp9_F_contig961.17728.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
GKEYIFISNVDNLGATVDLDMLYHIFDQEAEFAVEAIERTRADLTGGLVV
GYGGKPKVVELSTVPTERRDQFVKKFNLFNTNNM*
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mRNA from alignment at Ecto-sp9_F_contig961:27517..27771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig961.17728.1 ID=mRNA_Ecto-sp9_F_contig961.17728.1|Name=mRNA_Ecto-sp9_F_contig961.17728.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp9_F_contig961:27517..27771+ (Ectocarpus species9 EcSCA_722f female)
GGCAAGGAGTACATCTTCATCAGCAACGTGGACAACCTCGGGGCCACGGT
GGACCTGGACATGCTGTACCACATCTTCGACCAGGAGGCCGAGTTCGCCG
TGGAGGCCATCGAGCGCACGAGAGCCGACCTGACGGGCGGGCTGGTGGTG
GGGTACGGGGGCAAGCCCAAGGTGGTGGAGCTGAGCACGGTGCCGACGGA
GCGAAGAGACCAGTTCGTCAAGAAGTTCAACCTCTTCAACACCAACAACA
TGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig961:27517..27771+

>mRNA_Ecto-sp9_F_contig961.17728.1 ID=mRNA_Ecto-sp9_F_contig961.17728.1|Name=mRNA_Ecto-sp9_F_contig961.17728.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig961:27517..27771+ (Ectocarpus species9 EcSCA_722f female)
GGCAAGGAGTACATCTTCATCAGCAACGTGGACAACCTCGGGGCCACGGT
GGACCTGGACATGCTGTACCACATCTTCGACCAGGAGGCCGAGTTCGCCG
TGGAGGCCATCGAGCGCACGAGAGCCGACCTGACGGGCGGGCTGGTGGTG
GGGTACGGGGGCAAGCCCAAGGTGGTGGAGCTGAGCACGGTGCCGACGGA
GCGAAGAGACCAGTTCGTCAAGAAGTTCAACCTCTTCAACACCAACAACA
TGTGAGGCAAGGAGTACATCTTCATCAGCAACGTGGACAACCTCGGGGCC
ACGGTGGACCTGGACATGCTGTACCACATCTTCGACCAGGAGGCCGAGTT
CGCCGTGGAGGCCATCGAGCGCACGAGAGCCGACCTGACGGGCGGGCTGG
TGGTGGGGTACGGGGGCAAGCCCAAGGTGGTGGAGCTGAGCACGGTGCCG
ACGGAGCGAAGAGACCAGTTCGTCAAGAAGTTCAACCTCTTCAACACCAA
CAACATGTGA
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