mRNA_Ecto-sp9_F_contig960.17716.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig960.17716.1
Unique NamemRNA_Ecto-sp9_F_contig960.17716.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig960.17716.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM02_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 2.260e-153
Identity = 233/239 (97.49%), Postives = 234/239 (97.91%), Query Frame = 1 
Query:   55 MSYPTNDNSGWESPPRRPSEGTIVLAPRRRSIIRDEEGEGEDVEEKPDPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGCYLRENWMCYPAYCLGASCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXXXGETTHKEEELDYPRDDGVKRPHAIXXXXXXXXXGKRVELTPEKEVKVVLDYPR 771
            MSYPTNDNSGWE P RRPSEGTIVLAPRRRSIIRDEEGEGE VEEKPDPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGCYLRENWMCYPAYCLGASCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXXXGETT+KEEELDYPRDDGVKRPHAI XXXXXXX GKRVELTPEKEVKVVLDYPR
Sbjct:    1 MSYPTNDNSGWEPPSRRPSEGTIVLAPRRRSIIRDEEGEGEGVEEKPDPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGCYLRENWMCYPAYCLGASCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXXXGETTYKEEELDYPRDDGVKRPHAIEXXXXXXXGGKRVELTPEKEVKVVLDYPR 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig960.17716.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.260e-15397.49protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM02... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig960contigEcto-sp9_F_contig960:10590..13916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000370.1
Exons3
Model size1681
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig960.17716.1prot_Ecto-sp9_F_contig960.17716.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig960 10644..13009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.0102406-UTR-Ecto-sp9_F_contig960:10589..106431622931047.0102406-UTR-Ecto-sp9_F_contig960:10589..10643Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig960 10590..10643 +
1692279007.8706107-UTR-Ecto-sp9_F_contig960:10589..106431692279007.8706107-UTR-Ecto-sp9_F_contig960:10589..10643Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig960 10590..10643 +
1622931047.0756671-UTR-Ecto-sp9_F_contig960:13009..139161622931047.0756671-UTR-Ecto-sp9_F_contig960:13009..13916Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig960 13010..13916 +
1692279007.9035416-UTR-Ecto-sp9_F_contig960:13009..139161692279007.9035416-UTR-Ecto-sp9_F_contig960:13009..13916Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig960 13010..13916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.0277612-CDS-Ecto-sp9_F_contig960:10643..108111622931047.0277612-CDS-Ecto-sp9_F_contig960:10643..10811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 10644..10811 +
1692279007.8790529-CDS-Ecto-sp9_F_contig960:10643..108111692279007.8790529-CDS-Ecto-sp9_F_contig960:10643..10811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 10644..10811 +
1622931047.0478501-CDS-Ecto-sp9_F_contig960:11358..114541622931047.0478501-CDS-Ecto-sp9_F_contig960:11358..11454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 11359..11454 +
1692279007.887169-CDS-Ecto-sp9_F_contig960:11358..114541692279007.887169-CDS-Ecto-sp9_F_contig960:11358..11454Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 11359..11454 +
1622931047.060381-CDS-Ecto-sp9_F_contig960:12553..130091622931047.060381-CDS-Ecto-sp9_F_contig960:12553..13009Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 12554..13009 +
1692279007.8951445-CDS-Ecto-sp9_F_contig960:12553..130091692279007.8951445-CDS-Ecto-sp9_F_contig960:12553..13009Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig960 12554..13009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig960.17716.1

>prot_Ecto-sp9_F_contig960.17716.1 ID=prot_Ecto-sp9_F_contig960.17716.1|Name=mRNA_Ecto-sp9_F_contig960.17716.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=240bp
MSYPTNDNSGWESPPRRPSEGTIVLAPRRRSIIRDEEGEGEDVEEKPDPP
LGRWHQHSLCPCRNPNIMLYSLCCCCCAMGDIGCYLRENWMCYPAYCLGA
SCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLM
PCLHISQMRAEVAFRKHGKATVCPCCCCGCGGGKGPGETTHKEEELDYPR
DDGVKRPHAIEEADYPREGGKRVELTPEKEVKVVLDYPR*
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mRNA from alignment at Ecto-sp9_F_contig960:10590..13916+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig960.17716.1 ID=mRNA_Ecto-sp9_F_contig960.17716.1|Name=mRNA_Ecto-sp9_F_contig960.17716.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3327bp|location=Sequence derived from alignment at Ecto-sp9_F_contig960:10590..13916+ (Ectocarpus species9 EcSCA_722f female)
GCGCCACAGAGAGACCGACCAACCAACGCAGGAGCACCAGCAGGGAGGGC
GGTGATGTCGTACCCAACGAACGACAACTCCGGGTGGGAGTCTCCCCCGC
GCAGACCATCGGAAGGGACGATAGTGCTTGCACCCAGGCGACGCTCCATA
ATCAGAGACGAGGAGGGCGAGGGAGAAGATGTTGAAGAGAAGCCTGATCC
CCCGTTGGGACGATGGCACCAGGTGCAGCAGGCGGTATAACACGGTCGTC
CTTTGGCACATGTTTCAGAGTGTTCATGCAATGCACTGATGCTGCTGCTG
CGCACAAAGAATAGCCGTGGAAAACATCAGCTCAATATCGGCTGCCACCA
GTGTACAGCAGGACGAATAGGGGGTCGCGAAGATCTGCTCGAATGAAGGG
TCGGGTTTTCTGCGGTGTCGTGTGCACAATGTTGTTCCGCCGATGAAACT
CTGATGGGCTGCACTGCTGTTGGCGCATGCATTCGCTTCAAACGTCGCAG
CGGCGTGCACTTCGTGGGTACGGCTCTGCAACTATACCCATTCCTGATAG
AGCCACGTTTTCTCCTGCTTCCTTGGTATTTGTTGTTGTTGTTGTTGTTG
TTGTTGTCTTCCGTTCCGTTCTCTCTTCACCCAAACCGTCATCTGTCCGT
CCTGTGTACAGTAGTAGCAGTAGCAGCAAGCACTTTGCGCGGTATGAGAT
CGACTTTTGATCGGGCTCTTGCCGCCCTGTCCCTGTCCCTATTCCCCGCT
TGCTGTATTGGGTCGGAAGCACTCTCTTTGCCCCTGTCGGAACCCGAACA
TCATGCTCTACTCTCTGTGCTGCTGCTGCTGCGCTATGGGAGACATCGGC
TGCTACCTTCGTGAGGTGAGAGCTTTTGAGCACGGCTGCTTGCATCATCC
CCATTGTCGCTGCAGTTCGTCCGTGCTTGGAATCTCCACCACAAGTTCGA
TGTATGTTGTACCGGTCCCAACACAAGTAGAGAAATATTATATTGTTCAT
GCATACTTCTTCCGTCACAACAAAGAAAAGGGTCTGGTCTTGCACAACAC
CAACCGCCGAGTTGTCGTTTGCGGACTGTTAACAGTCCGGTGTATGGCAG
TCGAAGTGCTCCGGAGTTCGTGAGTGCCACTGTACCGGGACAAGGAAGTT
GCGGACTCCTTTTTCCGAAATTTCGAAAAAAAAGGCAAACACCTCGGGGG
CAGCCTAAGCTTCCGCGGGGGAGCTCGAGAGGAACCAGTCTGTTCAGCCC
CGAATCGGAATTGTGCTCAGTAGGATACAAGACCGCATAGTAGATACTGC
AGGTGCCGTTGACAGCAGTCGGGGAAAGTACTGTACGGTCCTGGTGCCGC
TAGTAACCCGAGTGCTGGTATCAACCAAATCTCGTGTACGACCGGTAGGA
TAAGTACAGTGTATCTCATACATACGGCCAAATAGGTAAGTAGAATCCAC
CTAAACGTTTTTGAAGGAGAGTACGTGCAGGAACCTTTGAAAGCCTTGGA
GTCCCTCGGTGACAATCTTTCTTGCTAGCTTTATCTGCTTATGGTGTGCC
CGGCAATCCTCGTGCTTAGAGCTAACTGTTGGTTCCCCGGGTGCCTTATC
GGAAGTATGGCGTGTGCGTTACTACCGACGGACTTGAACAGAAAAATAGC
TGTCGTTGGTTGATGGCAATAGTCCGTCCGCTCATGCTAATGCTGCCGCT
TGCTGGGCCAACAAAACGTGCAAAACGCTAGCCCTTCCTCCCCCCCCTCC
CCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCACCACCCCCCCCCCCGC
CCCCCCCCCCCCAACCCGANNNNNNNNNNCCTCATCGTCACTGTGCCCCT
TGCTGGGCCAACAAAACGTGCAAAACGCTAGCCCTTCTCCCCCCCCCCCC
CCCCCCCCCCCCCCCCTACAAACACACGTCGCCAAACATCTCCACGCGCT
GTGCCCCGGACCAGAACTGGATGTGTTACCCAGCGTACTGCCTCGGAGCA
TCGTGCCCGTGCTGCGTGGGCGACACGCGCGAGCTGGTGGCGGAGAAATA
TAACCTACCCATCGTTTCGTGGGATCCGGACGAGTTCGGCTGGTGCTTCG
TCAAGATGATCGGCGCGAGGCTCATGTGCTTCTGCAGCGTGTGCCTGATG
CCGTGCCTTCACATCTCCCAGATGAGGGCGGAGGTAGCGTTCCGGAAGCA
CGGGAAGGCGACCGTGTGTCCGTGCTGCTGCTGCGGGTGCGGCGGGGGCA
AAGGCCCAGGTGAAACCACGCACAAGGAGGAGGAGCTGGACTACCCGCGG
GACGATGGAGTGAAGCGCCCGCATGCCATTGAAGAGGCCGACTACCCACG
GGAAGGCGGCAAGAGGGTCGAACTCACGCCCGAGAAAGAGGTTAAGGTCG
TGTTGGATTATCCGCGTTGAACTTGTTGCTTCTGCACCCTTGAACTCCTG
TGTAGTTAGGGAACTAAGTGTGGCGAATCGGGTTGGCCACATTTTACCGC
CGGTGGGGGGGGTATCCATCGTGTGTCATCACAGGGAGGCGGCCTTTTAA
TAACTCTCGTGTGCTGTCAATCTGTGTCTCCACTGCTTGTGTGTGATGTA
GATAAAGCCGTTAGGTCGCCAATGGGGTGAGGGTGTTCCCGTGCGTGCAA
TACCGCATGTTGCAGTTACAGCAGTGAAGAGTGTGTGTGCGCCACGCTCG
ATTTCGATGGCTCGCTGGTTGTCTCCCGCACTGTATCATGTGTTCGGGTA
GGATGGGGTTGTAGAAAGTTCGAAAAATGAAAATAGCGCCAGCTGTCAAT
GGCGGTAAAGTTGCTACCAGTATTTCAATTGGTGTTGTGGCCCTGCCCGT
GGGCTTGTATCCTATTGTTTTTTTCGTCCTGGCAACAATAAAGTGTGCCA
CTATGTGACGTAGTTTCAGTTAAGGTTAGAAAATAGTCTGTCATCCCCAG
GCGCGACACAGGGGTGTGTGGAGATCGATCTCTTGGGGTGGTCTCAATGA
TGGAAATATTAGGGTTTCCGTCTTTTTATTTGCACCTCGACACCAACTTG
GAGTGTCTGAACCTTGACTCCGACATTGAGTGTCAGGTGTGTGCCGCCCT
CTCTTTCATCGTCAAGTTTCAATGTCTTTCTTTGTGTTGCAACCCGTTGG
GACCGAGGGTCCCGCTTGTGGGCTCAATTTGCGTTGGCGCCTCGCCCAAG
TGTCAAACGGCACCCTTCTCAAGTTCAAAAAGCGTTTTTTGGGGCACAGC
TTCCCTACGCCTCGCGTTCGATCAGCGGCAAGCCTCCGAGCATCAGCAAA
CCACTCGTGCTTTTCGTCGCGCCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig960:10590..13916+

>mRNA_Ecto-sp9_F_contig960.17716.1 ID=mRNA_Ecto-sp9_F_contig960.17716.1|Name=mRNA_Ecto-sp9_F_contig960.17716.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1440bp|location=Sequence derived from alignment at Ecto-sp9_F_contig960:10590..13916+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGTACCCAACGAACGACAACTCCGGGTGGGAGTCTCCCCCGCGCAG
ACCATCGGAAGGGACGATAGTGCTTGCACCCAGGCGACGCTCCATAATCA
GAGACGAGGAGGGCGAGGGAGAAGATGTTGAAGAGAAGCCTGATCCCCCG
TTGGGACGATGGCACCAGATGTCGTACCCAACGAACGACAACTCCGGGTG
GGAGTCTCCCCCGCGCAGACCATCGGAAGGGACGATAGTGCTTGCACCCA
GGCGACGCTCCATAATCAGAGACGAGGAGGGCGAGGGAGAAGATGTTGAA
GAGAAGCCTGATCCCCCGTTGGGACGATGGCACCAGCACTCTCTTTGCCC
CTGTCGGAACCCGAACATCATGCTCTACTCTCTGTGCTGCTGCTGCTGCG
CTATGGGAGACATCGGCTGCTACCTTCGTGAGCACTCTCTTTGCCCCTGT
CGGAACCCGAACATCATGCTCTACTCTCTGTGCTGCTGCTGCTGCGCTAT
GGGAGACATCGGCTGCTACCTTCGTGAGAACTGGATGTGTTACCCAGCGT
ACTGCCTCGGAGCATCGTGCCCGTGCTGCGTGGGCGACACGCGCGAGCTG
GTGGCGGAGAAATATAACCTACCCATCGTTTCGTGGGATCCGGACGAGTT
CGGCTGGTGCTTCGTCAAGATGATCGGCGCGAGGCTCATGTGCTTCTGCA
GCGTGTGCCTGATGCCGTGCCTTCACATCTCCCAGATGAGGGCGGAGGTA
GCGTTCCGGAAGCACGGGAAGGCGACCGTGTGTCCGTGCTGCTGCTGCGG
GTGCGGCGGGGGCAAAGGCCCAGGTGAAACCACGCACAAGGAGGAGGAGC
TGGACTACCCGCGGGACGATGGAGTGAAGCGCCCGCATGCCATTGAAGAG
GCCGACTACCCACGGGAAGGCGGCAAGAGGGTCGAACTCACGCCCGAGAA
AGAGGTTAAGGTCGTGTTGGATTATCCGCGTTGAAACTGGATGTGTTACC
CAGCGTACTGCCTCGGAGCATCGTGCCCGTGCTGCGTGGGCGACACGCGC
GAGCTGGTGGCGGAGAAATATAACCTACCCATCGTTTCGTGGGATCCGGA
CGAGTTCGGCTGGTGCTTCGTCAAGATGATCGGCGCGAGGCTCATGTGCT
TCTGCAGCGTGTGCCTGATGCCGTGCCTTCACATCTCCCAGATGAGGGCG
GAGGTAGCGTTCCGGAAGCACGGGAAGGCGACCGTGTGTCCGTGCTGCTG
CTGCGGGTGCGGCGGGGGCAAAGGCCCAGGTGAAACCACGCACAAGGAGG
AGGAGCTGGACTACCCGCGGGACGATGGAGTGAAGCGCCCGCATGCCATT
GAAGAGGCCGACTACCCACGGGAAGGCGGCAAGAGGGTCGAACTCACGCC
CGAGAAAGAGGTTAAGGTCGTGTTGGATTATCCGCGTTGA
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