mRNA_Ecto-sp9_F_contig958.17700.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig958.17700.1
Unique NamemRNA_Ecto-sp9_F_contig958.17700.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig958.17700.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig958contigEcto-sp9_F_contig958:3023..3694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size673
Cds size429
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.9314854-CDS-Ecto-sp9_F_contig958:3022..34511622931043.9314854-CDS-Ecto-sp9_F_contig958:3022..3451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig958 3023..3451 +
1692279006.329841-CDS-Ecto-sp9_F_contig958:3022..34511692279006.329841-CDS-Ecto-sp9_F_contig958:3022..3451Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig958 3023..3451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.9590943-UTR-Ecto-sp9_F_contig958:3451..36941622931043.9590943-UTR-Ecto-sp9_F_contig958:3451..3694Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig958 3452..3694 +
1692279006.342408-UTR-Ecto-sp9_F_contig958:3451..36941692279006.342408-UTR-Ecto-sp9_F_contig958:3451..3694Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig958 3452..3694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig958.17700.1prot_Ecto-sp9_F_contig958.17700.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig958 3023..3451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig958.17700.1

>prot_Ecto-sp9_F_contig958.17700.1 ID=prot_Ecto-sp9_F_contig958.17700.1|Name=mRNA_Ecto-sp9_F_contig958.17700.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=143bp
SIKHRVVHDYPFDLHRRCERGHNTNGEGYRQATVVRSAAQTREKFTTGII
NECQNRFESVISSSNRNQAGRQDATEKTKRKQSIKRAEFSNAAPTFAVCS
ACSGGWTQTTPPNPISWHTIRTKMILRLHVSKQKGHVIRHGC*
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mRNA from alignment at Ecto-sp9_F_contig958:3023..3694+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig958.17700.1 ID=mRNA_Ecto-sp9_F_contig958.17700.1|Name=mRNA_Ecto-sp9_F_contig958.17700.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig958:3023..3694+ (Ectocarpus species9 EcSCA_722f female)
TCGATAAAGCATCGCGTTGTTCATGACTATCCTTTCGACCTTCATCGCCG
TTGTGAACGTGGACATAACACGAACGGAGAGGGGTACCGCCAAGCAACCG
TTGTCCGCTCCGCGGCACAGACCCGAGAAAAATTCACAACTGGAATCATC
AATGAATGCCAAAACCGATTTGAAAGCGTCATCAGCTCAAGCAACAGAAA
CCAAGCTGGACGACAAGACGCAACGGAAAAAACGAAAAGAAAACAATCTA
TCAAGCGCGCCGAGTTTAGCAACGCAGCGCCGACGTTCGCTGTTTGTAGC
GCATGTAGCGGAGGATGGACTCAAACAACCCCACCTAACCCTATATCATG
GCACACAATCCGGACCAAAATGATACTCCGGTTGCATGTCAGCAAACAGA
AAGGCCATGTAATCCGCCACGGGTGCTAAGGAGGCGGTACTTAAACTGGA
GAGACGTGTCTGGACTAAATAATTCGGCCACAAGACTGCTGCGCCTCTCC
TACACTACCAATCTCCCGATTCCTAGGGAACGGAACGTGTTGCAATTCAT
TCTCCCATTCTCCCTAAACTCTAGCTTCTCGCAAGGCGTACTTTTTCAAC
AACAACGGCTGGGAAGCTTGTATCTGGCGAATGGCTACTGCGCCGCCAGG
GTGGCATGTTGGTACAAGCACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig958:3023..3694+

>mRNA_Ecto-sp9_F_contig958.17700.1 ID=mRNA_Ecto-sp9_F_contig958.17700.1|Name=mRNA_Ecto-sp9_F_contig958.17700.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp9_F_contig958:3023..3694+ (Ectocarpus species9 EcSCA_722f female)
TCGATAAAGCATCGCGTTGTTCATGACTATCCTTTCGACCTTCATCGCCG
TTGTGAACGTGGACATAACACGAACGGAGAGGGGTACCGCCAAGCAACCG
TTGTCCGCTCCGCGGCACAGACCCGAGAAAAATTCACAACTGGAATCATC
AATGAATGCCAAAACCGATTTGAAAGCGTCATCAGCTCAAGCAACAGAAA
CCAAGCTGGACGACAAGACGCAACGGAAAAAACGAAAAGAAAACAATCTA
TCAAGCGCGCCGAGTTTAGCAACGCAGCGCCGACGTTCGCTGTTTGTAGC
GCATGTAGCGGAGGATGGACTCAAACAACCCCACCTAACCCTATATCATG
GCACACAATCCGGACCAAAATGATACTCCGGTTGCATGTCAGCAAACAGA
AAGGCCATGTAATCCGCCACGGGTGCTAATCGATAAAGCATCGCGTTGTT
CATGACTATCCTTTCGACCTTCATCGCCGTTGTGAACGTGGACATAACAC
GAACGGAGAGGGGTACCGCCAAGCAACCGTTGTCCGCTCCGCGGCACAGA
CCCGAGAAAAATTCACAACTGGAATCATCAATGAATGCCAAAACCGATTT
GAAAGCGTCATCAGCTCAAGCAACAGAAACCAAGCTGGACGACAAGACGC
AACGGAAAAAACGAAAAGAAAACAATCTATCAAGCGCGCCGAGTTTAGCA
ACGCAGCGCCGACGTTCGCTGTTTGTAGCGCATGTAGCGGAGGATGGACT
CAAACAACCCCACCTAACCCTATATCATGGCACACAATCCGGACCAAAAT
GATACTCCGGTTGCATGTCAGCAAACAGAAAGGCCATGTAATCCGCCACG
GGTGCTAA
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