mRNA_Ecto-sp9_F_contig957.17691.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig957.17691.1
Unique NamemRNA_Ecto-sp9_F_contig957.17691.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVG7_ECTSI)

HSP 1 Score: 466 bits (1198), Expect = 9.900e-164
Identity = 235/245 (95.92%), Postives = 237/245 (96.73%), Query Frame = 1
Query:    1 GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGLDPKTPI 735
            GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDM GLERY+AADG SKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATN+IK    A TVGQGGD LVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGLDPKTPI
Sbjct:  117 GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMGGLERYVAADGDSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNLIKV---AATVGQGGDTLVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGLDPKTPI 358          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C919_9STRA)

HSP 1 Score: 286 bits (731), Expect = 1.050e-92
Identity = 152/239 (63.60%), Postives = 175/239 (73.22%), Query Frame = 1
Query:    1 GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGL 717
            GMAP+TKG   Y  EGFE  +GTNHLGHFLLANLL+  LEA     PRL+VTASSVHDP TPGG+ GSKATLGDM+GL     A G + KFDMVDGG YDGDKAYKDSKLCNVLFT E  RRL+ + S V V+CFSPGLIP+SGLFR+QNP+F K+F FAA +++     A T+G+GGDAL  M T   L     GG F AT+PGKP+SAF  +  S EA D AK +RLWELS  CVGL
Sbjct:  133 GMAPATKGEAQYTKEGFEVAIGTNHLGHFLLANLLLDRLEASGAAEPRLIVTASSVHDPATPGGDVGSKATLGDMAGLA--ARATGAAPKFDMVDGGSYDGDKAYKDSKLCNVLFTRELNRRLTKKDSKVHVNCFSPGLIPTSGLFRSQNPLFVKVFGFAAGSVLGI---AATIGEGGDALSYMATSDELV--GKGGLFLATDPGKPKSAFKARTPSQEALDDAKAQRLWELSEKCVGL 364          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW84_9STRA)

HSP 1 Score: 278 bits (711), Expect = 6.570e-89
Identity = 148/239 (61.92%), Postives = 176/239 (73.64%), Query Frame = 1
Query:    1 GMAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGL 717
            GMAP+TKGSP +   GFEET+G NHLGHFLLANLL+K LE+ +L  PRLVVTASSVHDPD PGG+ GS ATLGD+SGL+ +L     + KF+MVDG  YDGDKAYKDSKLCNVLFT E QRRL A  S V V+CFSPGLIPS+GLFRNQNP+F+K FD A +    A+  A T   GG  L  MVT   +   +  G+FFAT+PGKP+S F+E  VS EA+D+ K K LW+LSA  V +
Sbjct:  183 GMAPNTKGSPKFTDAGFEETIGVNHLGHFLLANLLLKNLESSSLPQPRLVVTASSVHDPDQPGGDVGSTATLGDLSGLKGWL----DTGKFEMVDGNAYDGDKAYKDSKLCNVLFTEECQRRLDANGSKVTVNCFSPGLIPSTGLFRNQNPLFTKAFDIATS----AAGVATTAEAGGTCLSYMVTSSEID--SIKGKFFATQPGKPKSPFAEFPVSKEAQDMEKAKELWKLSAQLVNI 411          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA04_HETAK)

HSP 1 Score: 253 bits (646), Expect = 7.080e-80
Identity = 142/238 (59.66%), Postives = 163/238 (68.49%), Query Frame = 1
Query:    1 GMAPSTKGSPG-YCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCV 711
            GMAP+TK     Y  +GFEET+G NHLGHFLLA+LLIK LE+     PRLVVTASSVHDPD PGG+ GSKA LGD+ GLE Y     +   FDMVDGG +DGDKAYKDSKLCNVLFT E QRRL+A+ S V  +CFSPGLIP+SGLFRNQNP+FS  F      I  A   A TV QGGD L  +V    L+    GG F  T+PGKP+S F    +S EA DV+K K L+ELS   V
Sbjct:  133 GMAPNTKQPAAKYTAQGFEETIGVNHLGHFLLASLLIKNLESSKQANPRLVVTASSVHDPDQPGGDVGSKAALGDLLGLEGYF----QKGTFDMVDGGAFDGDKAYKDSKLCNVLFTTEMQRRLAAKGSKVTCNCFSPGLIPTSGLFRNQNPLFSGAFGL----ITGAVGVAATVEQGGDCLAYLVDAPELE--GQGGLFLTTQPGKPKSDFGPFPISKEASDVSKAKSLFELSTKLV 360          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGF5_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.220e-77
Identity = 133/234 (56.84%), Postives = 163/234 (69.66%), Query Frame = 1
Query:    1 GMAPSTKGS-PGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELS 699
            G+A ST  + P +  EGFEET+G NH GHFLLA  L+  LE  +L  PRLVVTASSVHDP TPGGN G  ATLG++ G   +L    K K+F+MVDGG Y GDKAYKDSKL NVLFT E  RRL  R+S V+ DCFSPGLIPS+GLFR+QN +F  +F+F A N++   T   T+ +GGD LV MV    L+D +A   F AT PGKP+  FS Q +S EA+D AK +R+W+LS
Sbjct:  208 GVAMSTSETMPHFTAEGFEETIGVNHFGHFLLAQKLLPNLEKSSLAHPRLVVTASSVHDPSTPGGNVGPGATLGNLKGFTDFLE---KGKRFEMVDGGSYSGDKAYKDSKLLNVLFTQEMSRRLLDRKSKVRCDCFSPGLIPSTGLFRSQNQLFVGLFNFFAVNVLGVGT---TISEGGDCLVYMVEAPELEDTSA--VFLATPPGKPKDLFSSQTISKEAQDTAKAQRVWDLS 433          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UQ39_9STRA)

HSP 1 Score: 213 bits (541), Expect = 4.740e-65
Identity = 126/246 (51.22%), Postives = 159/246 (64.63%), Query Frame = 1
Query:    1 GMAPSTKGSPGYCT-EGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPE-------SAFSEQAVSVEARDVAKGKRLWELSAGCVG 714
            G+A +T  S    T EGFE TVGTNH GHF L  L++  ++     T R+VVTASSVHDPD+PGG QGSKATLG + GL+R    DG    F+MVDG ++D DKAYKDSKLCNVLFT E QRRL    + +KV+CFSPGLI  +GLFR+QNPIF+K+FD AATN++K      +V  GG  L  M+ + ++   + GG F+   PG  +         F+   VS EARD AK + LWELS   +G
Sbjct:   50 GIARNTAASECLRTKEGFELTVGTNHFGHFYLNQLILPKIKQN---TGRIVVTASSVHDPDSPGGAQGSKATLGTLEGLKR----DGNM--FEMVDGEKFDADKAYKDSKLCNVLFTRELQRRLDKDGTGIKVNCFSPGLIVGTGLFRDQNPIFTKVFDIAATNLLKVGE---SVHWGGGTLEYMILDKTVA--SKGGLFYTAAPGSGKYGDDAYGKQFAPAEVSKEARDDAKARELWELSDKLLG 281          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8I2_9STRA)

HSP 1 Score: 217 bits (552), Expect = 6.120e-65
Identity = 124/234 (52.99%), Postives = 157/234 (67.09%), Query Frame = 1
Query:   43 EGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKA--STHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKP---ESAFSEQ----AVSVEARDVAKGKRLWELSAGCVGL 717
            EGFE TVGTNHLGHF L NL++  ++     T R+VVTAS VHDP +PGG QGS ATLGD+SG+           +FDMVDGG +D DKAYKDSKLCNVLFT E QRRL A    +K +CF+PGLI  +GLFR+QNP+F+K+FDFAAT+++K   STH      GG +L  M  + ++  G+ GG ++ + PG     ++AF EQ     VS EA+D AK K LW+LS   VGL
Sbjct:  214 EGFELTVGTNHLGHFYLCNLILPQVKKN---TGRIVVTASGVHDPKSPGGAQGSLATLGDLSGIT-------SGPQFDMVDGGPFDPDKAYKDSKLCNVLFTRELQRRLDASGVGIKANCFNPGLIVGTGLFRDQNPLFTKVFDFAATDLLKVGESTH-----WGGGSLEYMTLDRTV--GSKGGFYYTSPPGSSKYGDAAFGEQFAPMQVSEEAQDDAKAKNLWDLSEKLVGL 430          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HJM0_9CRYP)

HSP 1 Score: 213 bits (543), Expect = 1.530e-64
Identity = 122/225 (54.22%), Postives = 143/225 (63.56%), Query Frame = 1
Query:   43 EGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGL 717
            +GFE TVGTNHLGHF L  LL+  +E      PR+VVTAS VHDP +PGGN GSKATLGDM GL   +       +++MVDGG +D DKAYKDSKLCNVLFT E QRRL  + S V  +CFSPGLI  +GLFR+Q   F   FDF   N+ K    A TV  GGD LV M    SL+ G  G  +  ++PGK    F E  VS EA+D  KGKRLWELS   + L
Sbjct:  133 DGFEITVGTNHLGHFYLTQLLLDAVEKSP-EAPRIVVTASQVHDPSSPGGNVGSKATLGDMQGLAAGI-------EWEMVDGGGWDADKAYKDSKLCNVLFTRELQRRLQEKGSRVSCNCFSPGLITRTGLFRDQGGFFLSAFDFIVNNVAKV---AETVSFGGDCLVTMAVSESLE-GKRGVFWSNSKPGK--HTFEEVEVSAEAKDAEKGKRLWELSEQAITL 343          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XU82_HEMAN)

HSP 1 Score: 212 bits (540), Expect = 1.540e-64
Identity = 126/240 (52.50%), Postives = 149/240 (62.08%), Query Frame = 1
Query:    4 MAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRS--AVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGL 717
            ++   K  P    EGFE TVGTNHLGHFLL NLL+  L A   R  R+VVTAS VHDP++PGGN GSKATLG M+GLER         ++DMVDGG +DGDK+YKDSKLCNVLFT E   RL    +   V V+CFSPGLI  SGLFRNQ  +F  +FDFA  NI K      TV  GGD L+EM     L  G +G  +  ++PGK    F + AVS EA+D  K  +LW LS     L
Sbjct:   80 LSTGAKPPPPRTKEGFELTVGTNHLGHFLLCNLLLNEL-AKNQRGARIVVTASQVHDPESPGGNVGSKATLGTMAGLER-------GGEWDMVDGGPFDGDKSYKDSKLCNVLFTRELSTRLKNSNAFKGVTVNCFSPGLITKSGLFRNQGSVFVPVFDFAVNNIFKVGE---TVEFGGDCLLEMACSKRLA-GVSGDFWANSQPGK--HTFEKFAVSAEAQDAVKAAKLWRLSVKATKL 305          
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Match: Protochlorophyllide (reductase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSM7_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.620e-64
Identity = 118/232 (50.86%), Postives = 150/232 (64.66%), Query Frame = 1
Query:   43 EGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVVTASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDGDKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNPIFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFATEPGKPESA-------FSEQAVSVEARDVAKGKRLWELSAGCVGL 717
            +GFE T+GTNHLGHF L NLL++  E    +  R+VVTAS VHDPD+PGG QGS ATLGD++GLE+          F+M+DGG++D DKAYKDSKLCNV FT E +RRL+   S ++  CF+PGLI  +GLFR QN +F+KIFD AATN++K      T   GG AL  M     ++ G     ++ ++PG  +         F E  VS EA D AKGKRLWELSA  VG+
Sbjct:  142 DGFELTIGTNHLGHFYLTNLLLQ--ENKIKKNGRIVVTASGVHDPDSPGGAQGSLATLGDLTGLEQ-------GPSFEMIDGGKFDPDKAYKDSKLCNVFFTRELKRRLAESGSNIETCCFNPGLIVGTGLFREQNKVFTKIFDVAATNVLKVGE---TTSFGGGALEYMALSTDVKSG----EYYTSKPGSSKYGDDAYGVQFKETMVSKEALDAAKGKRLWELSAKLVGV 357          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig957.17691.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protochlorophyllide9.900e-16495.92reductase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Protochlorophyllide1.050e-9263.60reductase n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
Protochlorophyllide6.570e-8961.92reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 ... [more]
Protochlorophyllide7.080e-8059.66reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 ... [more]
Protochlorophyllide2.220e-7756.84reductase n=2 Tax=Monodopsidaceae TaxID=425072 Rep... [more]
Protochlorophyllide4.740e-6551.22reductase n=2 Tax=Ditylum brightwellii TaxID=49249... [more]
Protochlorophyllide6.120e-6552.99reductase n=1 Tax=Odontella aurita TaxID=265563 Re... [more]
Protochlorophyllide1.530e-6454.22reductase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A... [more]
Protochlorophyllide1.540e-6452.50reductase n=1 Tax=Hemiselmis andersenii TaxID=4649... [more]
Protochlorophyllide2.620e-6450.86reductase n=1 Tax=Leptocylindrus danicus TaxID=163... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig957contigEcto-sp9_F_contig957:24054..28091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score468.8
Seed ortholog evalue1.6e-129
Seed eggNOG ortholog2880.D7FVG7
KEGG rclassRC01008
KEGG koko:K00218
KEGG ReactionR03845,R06286
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
EC1.3.1.33
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlucose/ribitol dehydrogenase
Ec32 orthologEc-09_001020.1
Exons5
Model size738
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig957.17691.1prot_Ecto-sp9_F_contig957.17691.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig957 24054..28088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.7930632-CDS-Ecto-sp9_F_contig957:24053..242771622931042.7930632-CDS-Ecto-sp9_F_contig957:24053..24277Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 24054..24277 -
1692279005.7965472-CDS-Ecto-sp9_F_contig957:24053..242771692279005.7965472-CDS-Ecto-sp9_F_contig957:24053..24277Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 24054..24277 -
1622931042.8109922-CDS-Ecto-sp9_F_contig957:25671..258721622931042.8109922-CDS-Ecto-sp9_F_contig957:25671..25872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 25672..25872 -
1692279005.8084996-CDS-Ecto-sp9_F_contig957:25671..258721692279005.8084996-CDS-Ecto-sp9_F_contig957:25671..25872Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 25672..25872 -
1622931042.8579767-CDS-Ecto-sp9_F_contig957:26957..270631622931042.8579767-CDS-Ecto-sp9_F_contig957:26957..27063Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 26958..27063 -
1692279005.8203325-CDS-Ecto-sp9_F_contig957:26957..270631692279005.8203325-CDS-Ecto-sp9_F_contig957:26957..27063Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 26958..27063 -
1622931042.875298-CDS-Ecto-sp9_F_contig957:27666..277621622931042.875298-CDS-Ecto-sp9_F_contig957:27666..27762Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 27667..27762 -
1692279005.8293848-CDS-Ecto-sp9_F_contig957:27666..277621692279005.8293848-CDS-Ecto-sp9_F_contig957:27666..27762Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 27667..27762 -
1622931042.8921926-CDS-Ecto-sp9_F_contig957:27980..280881622931042.8921926-CDS-Ecto-sp9_F_contig957:27980..28088Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 27981..28088 -
1692279005.838251-CDS-Ecto-sp9_F_contig957:27980..280881692279005.838251-CDS-Ecto-sp9_F_contig957:27980..28088Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig957 27981..28088 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.91027-UTR-Ecto-sp9_F_contig957:28088..280911622931042.91027-UTR-Ecto-sp9_F_contig957:28088..28091Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig957 28089..28091 -
1692279005.8471217-UTR-Ecto-sp9_F_contig957:28088..280911692279005.8471217-UTR-Ecto-sp9_F_contig957:28088..28091Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig957 28089..28091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig957.17691.1

>prot_Ecto-sp9_F_contig957.17691.1 ID=prot_Ecto-sp9_F_contig957.17691.1|Name=mRNA_Ecto-sp9_F_contig957.17691.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=245bp
MAPSTKGSPGYCTEGFEETVGTNHLGHFLLANLLIKPLEAGALRTPRLVV
TASSVHDPDTPGGNQGSKATLGDMSGLERYLAADGKSKKFDMVDGGEYDG
DKAYKDSKLCNVLFTLEAQRRLSARRSAVKVDCFSPGLIPSSGLFRNQNP
IFSKIFDFAATNIIKASTHAPTVGQGGDALVEMVTELSLQDGAAGGRFFA
TEPGKPESAFSEQAVSVEARDVAKGKRLWELSAGCVGLDPKTPI*
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mRNA from alignment at Ecto-sp9_F_contig957:24054..28091-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig957.17691.1 ID=mRNA_Ecto-sp9_F_contig957.17691.1|Name=mRNA_Ecto-sp9_F_contig957.17691.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4038bp|location=Sequence derived from alignment at Ecto-sp9_F_contig957:24054..28091- (Ectocarpus species9 EcSCA_722f female)
GGCATGGCCCCCAGCACAAAAGGCTCTCCCGGCTACTGCACGGAAGGCTT CGAGGAGACCGTAGGGACTAACCACTTGGGCCATTTCCTCCTTGCCAACC TTCTCATCAAGGTCGGTGGTGTATTTTTTGGGTTTCTGTGAAGCTCCCGT AGTTGAATTTAAGCGCGTGCGAGCAGCTCGAGGGGGCGCAGAGTTTCGTT GCTCTGTCGCAAACCTCCAAATGCGGTAAGGGTATTCCATCCCTCCCTCC TGAACGTCTTGGCTGCTCTGCCCCCCCTACCCCCCCGGGGGCTCCGTATA CATGCACGTATGTGTGTGTGTTTCGGCAGCCGCTGGAGGCCGGTGCCCTT CGAACTCCGAGGCTTGTGGTGACCGCGAGCAGCGTCCATGACCCGGACAC TCCAGGGGGCAACCAAGGCTCCAAGGTCAGACCGAAAAATAAGTGAAGTT AAGAGCGGTACTGCTGTACGGTGTGGATGATGTATACGGTGTTTAGCAGA GACCGGGACGGTTTTTCAATGTGAAGACGAACGGCACGGAGCACTCAATA ATCGGGCTCCGACCTACCTGATCTTTTTTTCTTAGTGCCTGTTTTATTTT GTTTTTTATTGCTTGGGAATACATATGAGATATCAGGAGTCACCGGTAAG TAGGTACAACTGTGGCGTGTGGAGCGTTGAATGCAAATGCGAGAGACGGT AGTTGGGAGGAGTTCACGGTGTACGAACAGGTTGCTGAGGAAGAACCTGC GTTTGTTCGACGGCAGTTCGAGAAGAATGGACGGCATGTACTCTCTTTCT AAGCTTGAAAAAATGCGAAGTTCCTGGCGCTGTCATGGTACGCTATCTGT TATGATACTTCGAAGTGTAGTAGATTATTTTCTCTACTTGCAACTTGTTT ACGCAGAGCTCGACCATCTTTGTTGTTGTTGAACGGTCCCGCCACCCATC AGCACCCCCTCCATCCCTTATCTCCTGCATGGCTCCCTCTCCCTATTCAC CCTCCTCAACAACGCGGCCATGCCGCAGGCGACGCTGGGAGACATGAGCG GGCTGGAGCGATATCTCGCTGCGGACGGCAAGTCCAAGAAATTCGACATG GTAGATGGTGGCGAATACGACGGGGACAAGGCTTGTGAGTTTTGAGTTTT TTTTCCAGGGTTTCCGCTGATGGGACAAGGGGTATCGATCCCATCACCTA CACCTCCTTTTGTTTTTTTCTGGAAATGGCAGCATTTTGGCGTCTGTACC CTCGCCACCCGCTCCAGCCGCCTCACGTGTCTTGCACGTGGCAATTGCTC TTCGTCTCGCCTTCAAGAGATTCGGGTGTCTACACCTTGAACGCTAGAGC TTTGGAAACTGAACTCCCTTCTCATTTCTTCCCCGCCATGTCCAGGGCGG TGGCCGTTAGATGAGTGGGACTGCCCAAGCCCCGGCCCTTAACGCTGTGT GTTCTTTCAAAACCGATGTGTAGTTGCGATTGAGGTTGAGCCTGGGTTCG CATCTACCGCATTTTTGGTGGATGACAAACTGCTGTTGCGAGCTCATCTG GTCGAAACAAACCCCTTCCTGCCGTTTTTTTCATTTTGTTTGTTTGAAAT GTGCGTGTGGTCCACGCCAAACGGGGTATCGCCCTTGGTTTCAGAGGCTC CCTCTGCTTTAGCAGGGCCTCCAACAGCAGCGTACGCCCGACGATCGTCG CCGGTGCATTTGCATACGAGGTCTCTCATCGAAGCCTCGCTGTTGACTAC CCGACGGGCCTACGCTGCTTTTTTGTTGTTGGCCTTCCTGCCTGCCGTGT AGCTGTTTGTGGTCTTGACCCCCACGAAGACGGTGGCTTACCGGGGTAGT GGAATAGATACAGAATAGGGAAAACATACTTTGAGCTACCTTGGGCAAAG TAGGAAGGAACGATTGGCCACGGGTGATCGGTCCGATGGGAACAACGTTC CGTCCTCTCGAGAACGCGTGGTCAATGGTCTAAGGCGTACAAATCACGAG CCCCATCCCTCAATTGCCAGACAAGGGCTCGAAGCTGTGCAATGTCTTGT CCACGCGTGGCGATTGCTCCAATAGCTCAGGCATGCAAAACATGAGACCC CCCCCCACCCGCCAATTGCCAGACAAGGACACGAAGCTCTATATCTTATT CACGCGTGGTCAATGATCTGAAGCATAGAAAACATGACCCCCTCCCCCCC CTCCCCCGCCAATTGCCAGATAAGGACTCGAAGCTCTGCAACGTCTTGTT CACGCTGGAGGCGCAGCGGCGACTGTCTGCGAGGCGGTCCGCCGTCAAGG TGGACTGCTTCTCTCCAGGGCTGATCCCCAGCAGCGGCCTGTTCCGAAAC CAGAACCCGATCTTCTCCAAGATCTTCGACTTCGCGGCCACCAACATCAT CAAGGCGAGCACCCACGCGCGTCCGTAGTAATACTGTTTGGTTGCTGGTC TTGGTTGAGGGAGGGTGTAAGGTACGCGTGCGTTTGGTCGTACCGCACGA GCGAGACTTGGTACGCGTTTCGTCGCAAAGCTTCCCGCTGTTGTTGTCGT GTACGAAGTTTTCACACGGTAGACGCTTGGCACACCACCGTGCGCCACTT GTATTCTCGAGCTGTCGAGAAGGCCAAGATACCGACTTTTGTGCCCAAGG TTATCGACCAACGTCGTTTTTTTTCTTTCGTTGGACGTACGTGAGCTAGG GTAAGAACGCCTGCACCATGCCTGTTCATTTTGTGGGGCGACGACGGTGG TATCAGGGGTTGGACCATGTGACCAATCGCCGTCGTACGCGGCAAATGTG CAAGGACAAGACAAGACCGCATGCGCCACGTCGTACGTGCTTGTGACGAT TAGGGTAAACTAGTAGGGGAAGGGGACGCGTACTAAAAGCGACCAGAGAG GTGTGCTCAGATTTGTGAACATGTGTTTCGTCGCAACACTAGCGTCTGGC CGTCAATCAGCAGCAACGGAGGATTATATCTCGATCCAGGGGCGCCAAAA TCATTGTGAATTACCCATTGTTCGAGCCTTTTCAGCAATAATTGACTACC CCGGAGAGTTGTTGATGTTACGGGTAGAATGCGTCAGTGTGTGCGGACTA TCTGTCATGGCGCATTGTCCCCGTTGATGCACACGATATCAGCCACAAGC TGGACGATTTGAAAGATCAATTCTCCGCAACCACGACTACTTGTGTCGGT GCCGCGAATAGTGTGGAGTTGGTGATCTCGCTGTCAAGTTCTCTGGGTGA ATTACACACTTTTCGGTTCCACACCACCCGAGCTTTGCACGACTCTCGAG CTTGGGGAAACGCACCAAGTTGAGCGAGAAAGGGTGGCATCTCAAGGGAA CCGCAGCGGATTCGCTCCATGATTCCACCCAGTTTGTTTGTCTGCTGTGA TGTGTGGTAGGAGTGGCTTTCGACAGATTTTGCTGTCAAGCCCGCTGCCT CAATTTGAAAACATCCCACGCAAGAAGGGAAAAACGCCACCAAATCCACA GGAGTTCAAACGGCGGTGCACCGTCGAACGGTGGAATACCTGCGGAATCG CGTGCAACTTTATTTTGTCATGTTGTCGCCAACACCGCGGCTATCATATC ACGTATTCTAGCGCCGGCATGCGTGGGTCTAGAGCGTCCTGTCGTTCATG CCCCGCGCGCATCAAGCGTCTCTCGTGGCACCGACTATGCCGATATCCCA CCACAACCCCCTCCCTAACCGCGAAGACACGCAAACCATGAGTACGCCCC CCCCTCCCCCCTCTGCGCGCGCCAACACCCTTCCTCTCCATCATTCCTCT CCATCAGGTGGCAGCAACCGTGGGACAAGGGGGGGACGCCTTGGTGGAGA TGGTGACGGAGCTCTCCCTGCAGGACGGGGCGGCGGGCGGTAGGTTTTTC GCGACGGAGCCGGGGAAACCCGAGTCGGCGTTCTCGGAGCAGGCCGTTTC GGTAGAGGCGCGGGACGTGGCCAAGGGCAAGAGGTTGTGGGAGCTCAGTG CTGGGTGTGTCGGCCTGGACCCCAAGACTCCTATTTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig957:24054..28091-

>mRNA_Ecto-sp9_F_contig957.17691.1 ID=mRNA_Ecto-sp9_F_contig957.17691.1|Name=mRNA_Ecto-sp9_F_contig957.17691.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1470bp|location=Sequence derived from alignment at Ecto-sp9_F_contig957:24054..28091- (Ectocarpus species9 EcSCA_722f female)
ATGGCCCCCAGCACAAAAGGCTCTCCCGGCTACTGCACGGAAGGCTTCGA
GGAGACCGTAGGGACTAACCACTTGGGCCATTTCCTCCTTGCCAACCTTC
TCATCAAGATGGCCCCCAGCACAAAAGGCTCTCCCGGCTACTGCACGGAA
GGCTTCGAGGAGACCGTAGGGACTAACCACTTGGGCCATTTCCTCCTTGC
CAACCTTCTCATCAAGCCGCTGGAGGCCGGTGCCCTTCGAACTCCGAGGC
TTGTGGTGACCGCGAGCAGCGTCCATGACCCGGACACTCCAGGGGGCAAC
CAAGGCTCCAAGCCGCTGGAGGCCGGTGCCCTTCGAACTCCGAGGCTTGT
GGTGACCGCGAGCAGCGTCCATGACCCGGACACTCCAGGGGGCAACCAAG
GCTCCAAGGCGACGCTGGGAGACATGAGCGGGCTGGAGCGATATCTCGCT
GCGGACGGCAAGTCCAAGAAATTCGACATGGTAGATGGTGGCGAATACGA
CGGGGACAAGGCTTGCGACGCTGGGAGACATGAGCGGGCTGGAGCGATAT
CTCGCTGCGGACGGCAAGTCCAAGAAATTCGACATGGTAGATGGTGGCGA
ATACGACGGGGACAAGGCTTATAAGGACTCGAAGCTCTGCAACGTCTTGT
TCACGCTGGAGGCGCAGCGGCGACTGTCTGCGAGGCGGTCCGCCGTCAAG
GTGGACTGCTTCTCTCCAGGGCTGATCCCCAGCAGCGGCCTGTTCCGAAA
CCAGAACCCGATCTTCTCCAAGATCTTCGACTTCGCGGCCACCAACATCA
TCAAGGCGAGCACCCACGCGCATAAGGACTCGAAGCTCTGCAACGTCTTG
TTCACGCTGGAGGCGCAGCGGCGACTGTCTGCGAGGCGGTCCGCCGTCAA
GGTGGACTGCTTCTCTCCAGGGCTGATCCCCAGCAGCGGCCTGTTCCGAA
ACCAGAACCCGATCTTCTCCAAGATCTTCGACTTCGCGGCCACCAACATC
ATCAAGGCGAGCACCCACGCGCCAACCGTGGGACAAGGGGGGGACGCCTT
GGTGGAGATGGTGACGGAGCTCTCCCTGCAGGACGGGGCGGCGGGCGGTA
GGTTTTTCGCGACGGAGCCGGGGAAACCCGAGTCGGCGTTCTCGGAGCAG
GCCGTTTCGGTAGAGGCGCGGGACGTGGCCAAGGGCAAGAGGTTGTGGGA
GCTCAGTGCTGGGTGTGTCGGCCTGGACCCCAAGACTCCTATTTAGCAAC
CGTGGGACAAGGGGGGGACGCCTTGGTGGAGATGGTGACGGAGCTCTCCC
TGCAGGACGGGGCGGCGGGCGGTAGGTTTTTCGCGACGGAGCCGGGGAAA
CCCGAGTCGGCGTTCTCGGAGCAGGCCGTTTCGGTAGAGGCGCGGGACGT
GGCCAAGGGCAAGAGGTTGTGGGAGCTCAGTGCTGGGTGTGTCGGCCTGG
ACCCCAAGACTCCTATTTAG
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