mRNA_Ecto-sp9_F_contig9569.17686.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI) HSP 1 Score: 273 bits (697), Expect = 1.400e-83 Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 2
Query: 2 AIETILMKLVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISAGVTAGSVPSPPV 442
AIETILMKLVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISAGVTAGS PSPPV
Sbjct: 575 AIETILMKLVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISAGVTAGSAPSPPV 721
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ09_9PHAE) HSP 1 Score: 198 bits (504), Expect = 1.720e-63 Identity = 103/108 (95.37%), Postives = 104/108 (96.30%), Query Frame = 2
Query: 59 MATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLK 382
MATKVIQDDIASFRPTPEDLDYPGMLLRAA+GGGT D LVNARTG GDQPSPSSPPSS KGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLK
Sbjct: 1 MATKVIQDDIASFRPTPEDLDYPGMLLRAARGGGTSDGLVNARTGAGDQPSPSSPPSSTKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLK 108
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QLM6_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.590e-18 Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 2
Query: 26 LVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPP------SSG------KGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKK 385
+++D+QERLI+ A + ++ FRPTP DLDYP LL GT + T PSP++PP SSG + Y W+PP+RS L+VLSK++R V+ VFED+A SV +C +SLK+
Sbjct: 507 IIEDAQERLIFCANAALNKEVTRFRPTPSDLDYPAKLL------GTSTTTPVGGTANTGNPSPTTPPVNASSESSGASNDAVQAQLRVYEAWFPPMRSVLRVLSKIFRVVEPRVFEDIALQSVQSCTKSLKE 632
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QLN4_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 2.600e-18 Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 2
Query: 26 LVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPP------SSG------KGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKK 385
+++D+QERLI+ A + ++ FRPTP DLDYP LL GT + T PSP++PP SSG + Y W+PP+RS L+VLSK++R V+ VFED+A SV +C +SLK+
Sbjct: 507 IIEDAQERLIFCANAALNKEVTRFRPTPSDLDYPAKLL------GTSTTTPVGGTANTGNPSPTTPPVNASSESSGASNDAVQAQLRVYEAWFPPMRSVLRVLSKIFRVVEPRVFEDIALQSVQSCTKSLKE 632
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZS1_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 8.880e-18 Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 2
Query: 26 LVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAA 391
+++D+QERLIY A +Q ++ F+P+ +LDYP L+ A++ GT D + + Y TWYPPL+S L+VLSK+++ VD VFED+A SV ACA+ L+ AA
Sbjct: 458 VIEDAQERLIYCAQSTLQKEVMKFKPSAGELDYPKKLISASEKKGTADPV--------------------QAQMMVYETWYPPLKSVLRVLSKIFKVVDQKVFEDIALRSVQACAKCLRDAA 559
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YGQ7_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.600e-17 Identity = 48/125 (38.40%), Postives = 67/125 (53.60%), Query Frame = 2
Query: 26 LVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSI 400
+++D+QERLI+ A + D+ FR TP+DLDYPG L + A G+ K Y +W+PP+RS L++LSK++R V+ VFEDLA+ SV AC LK A I
Sbjct: 233 VIEDAQERLIFCANNALNKDVIRFRATPDDLDYPGKLTKKATASADGEDEDAV-----------------KKQLQVYESWFPPMRSVLRILSKIFRVVEPRVFEDLARDSVQACTRCLKDGAAHI 340
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E8_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 9.490e-16 Identity = 53/155 (34.19%), Postives = 80/155 (51.61%), Query Frame = 2
Query: 14 ILMKLVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLL----------------------------RAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSA-PAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAA 391
+L ++ +D+QERLIY+A +V++ ++ FRPTP DL+YPG L + KGG + + A + S G G P Y TW+P L+ TL +LSK+YRAV++ VF+++AQ ++AAC S AA
Sbjct: 580 VLERIAEDAQERLIYVAERVLRVEVEGFRPTPADLEYPGKLEAYWEAKRRGQEGGXXXXXXXXXXXXTAGKEGKGGAEAEEGMEALS------------SGGMGEVLPVYATWFPTLQMTLSLLSKIYRAVEIHVFQEMAQQALAACTYSFLAAA 722
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 1.300e-15 Identity = 60/160 (37.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query: 5 IETILMKLVQDSQER------------------------LIYMATKVIQDDIASFRPTPE--DLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISA 406
IET+L+KLVQD QER LI++A +VIQ D+A FRP + DLDYP +L RA+ + AY TWYPP+R L VLSK+YR VDMGVFED+A +V A +L A +++A
Sbjct: 682 IETVLLKLVQDCQERPMSDNLMFNCVTPFPYVNFNFNLQLIHLAQRVIQRDVAQFRPREDGADLDYPAVLSRASAA-----------------------------AIAAYDTWYPPMRVGLLVLSKIYRVVDMGVFEDIAAETVRAVTAALVAAGRAVAA 812
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWF7_HETAK) HSP 1 Score: 81.3 bits (199), Expect = 3.350e-15 Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 2
Query: 5 IETILMKLVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDSLVNARTGPGDQPSPSSPPSSGKGSAPAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAAVSISA 406
+E L ++ +D++ERLI A + +++D+A PT +LDYP L RAA A T G P + +WYPPLR+TL VLSK+YR+V VFEDLAQ + +L AAV I+A
Sbjct: 73 LERCLRRVAEDAEERLILCARRRLEEDVALHEPTDAELDYPATLERAA-----------AATAGGADP---------------FASWYPPLRATLMVLSKIYRSVGRAVFEDLAQQACLVTTHALAGAAVRITA 180
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M5_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 3.650e-15 Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = 2
Query: 14 ILMKLVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGML------LRAAKGGGTGDSLVNARTGPGD----------QPSPSSPPSSGKGSA-PAYTTWYPPLRSTLQVLSKVYRAVDMGVFEDLAQLSVAACAESLKKAA 391
+L ++ +D+QERLIY+A +V++ ++ FRPTP DL+YPG L R + GG+ + + + S G G P Y TW+P L+ TL +LSK+YRAV++ VF+++AQ ++AAC S AA
Sbjct: 9 VLERIAEDAQERLIYVAERVLRVEVEGFRPTPADLEYPGKLEAYWEAKRRGQEGGSQEXXXXXXXXXXXXXXXXXXXEAEEGMQALSSGGMGKVLPVYATWFPTLQMTLSLLSKIYRAVELHVFQEMAQQALAACTYSFLAAA 151 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9569.17686.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9569.17686.1 >prot_Ecto-sp9_F_contig9569.17686.1 ID=prot_Ecto-sp9_F_contig9569.17686.1|Name=mRNA_Ecto-sp9_F_contig9569.17686.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=141bp MKLVQDSQERLIYMATKVIQDDIASFRPTPEDLDYPGMLLRAAKGGGTGDback to top mRNA from alignment at Ecto-sp9_F_contig9569:320..3556+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9569.17686.1 ID=mRNA_Ecto-sp9_F_contig9569.17686.1|Name=mRNA_Ecto-sp9_F_contig9569.17686.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3237bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9569:320..3556+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9569:320..3556+ >mRNA_Ecto-sp9_F_contig9569.17686.1 ID=mRNA_Ecto-sp9_F_contig9569.17686.1|Name=mRNA_Ecto-sp9_F_contig9569.17686.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9569:320..3556+ (Ectocarpus species9 EcSCA_722f female)back to top |