mRNA_Ecto-sp9_F_contig9504.17643.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9504.17643.1
Unique NamemRNA_Ecto-sp9_F_contig9504.17643.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK2_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 4.170e-52
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            + QIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGL DEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV
Sbjct:   50 IEQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLGDEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 132
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Assimilatory (sulfite reductase (ferredoxin) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7S6_9STRA)

HSP 1 Score: 150 bits (379), Expect = 8.870e-41
Identity = 66/83 (79.52%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            +  IDPLTRL++ACPALPMCGLAITEAERRMP ++ R+RA+LD  GL DEE+M+RMTGCPNGCARPYMAELAFVGDGPD+YQV
Sbjct:  487 IEAIDPLTRLAIACPALPMCGLAITEAERRMPEFITRVRALLDAGGLGDEEIMMRMTGCPNGCARPYMAELAFVGDGPDTYQV 569
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Hypothetical (protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GPP5_CYCTE)

HSP 1 Score: 140 bits (353), Expect = 8.800e-40
Identity = 59/83 (71.08%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            + ++DPL RL+MACPALP+CGLA TEAER+MP Y+ ++R++L+K+ L+DEE+++RMTGCPNGCARPYMAELAFVGDGP SYQV
Sbjct:   95 IEEVDPLNRLAMACPALPLCGLAQTEAERKMPDYLAQMRSLLNKMNLSDEEILMRMTGCPNGCARPYMAELAFVGDGPKSYQV 177
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Assimilatory (sulfite reductase (ferredoxin) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3M1_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.220e-39
Identity = 64/83 (77.11%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            + +IDPL RL+MACPALP+CGLA TEAER MPSY+ER+RA+++KVG+ DEE+++RMTGCPNGCARPYMAELAFVGDGP SYQV
Sbjct:  447 LEEIDPLARLAMACPALPLCGLAQTEAERIMPSYIERMRAVMNKVGVDDEEILIRMTGCPNGCARPYMAELAFVGDGPKSYQV 529
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Assimilatory (sulfite reductase (ferredoxin) n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQU8_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.280e-39
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            + +IDPL RLSMACPALP+CGLA TEAER MPSY+ERIRA+L K+G+ DEE+++RMTGCPNGCARPYMAE+AFVGDGP SYQ+
Sbjct:  486 LEEIDPLARLSMACPALPLCGLAQTEAERIMPSYIERIRAVLGKLGIDDEEILMRMTGCPNGCARPYMAEMAFVGDGPKSYQI 568
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Assimilatory (sulfite reductase (ferredoxin) n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DXN9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.990e-39
Identity = 64/83 (77.11%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            + Q+DPL RL+MACPALP+CGLA TEAER MPSY+ERIRA+L+++ L+DEE+++RMTGCPNGCARPYMAELAFVGDGP SYQV
Sbjct:  484 LEQVDPLNRLAMACPALPLCGLAQTEAERIMPSYLERIRAVLNQMNLSDEEILIRMTGCPNGCARPYMAELAFVGDGPKSYQV 566
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Hypothetical (protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8GFQ6_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.850e-38
Identity = 60/83 (72.29%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            +  IDPL RL++ACPALP+CGLA TEAERRMPSY+ERIR++L+ + + +EE+M+RMTGCPNGCARPYMAELAFVGDG +SYQ+
Sbjct:  181 IEDIDPLNRLAIACPALPLCGLAQTEAERRMPSYIERIRSVLEMMNIGNEEIMMRMTGCPNGCARPYMAELAFVGDGLNSYQI 263
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Assimilatory (sulfite reductase (ferredoxin) n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYL9_FISSO)

HSP 1 Score: 143 bits (360), Expect = 3.690e-38
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            + Q+DPL RL+MACPALP+CGLA TEAER MPSY+ERIRA+L K+ L  EE+++RMTGCPNGCARPYMAELAFVGDGP SYQV
Sbjct:  477 LEQVDPLNRLAMACPALPLCGLAQTEAERLMPSYLERIRAVLTKLDLDQEEILIRMTGCPNGCARPYMAELAFVGDGPQSYQV 559
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIU7_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.490e-38
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            + QIDPLTRLSMAC ALP CGLAITEAERRMPS + RIRA+LD   L  EE+MVR TGCPNGCARPYMAELAFVGDGPD+YQ+
Sbjct:  448 IEQIDPLTRLSMACVALPTCGLAITEAERRMPSVIARIRALLDAESLGAEEIMVRATGCPNGCARPYMAELAFVGDGPDTYQL 530
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BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Match: Assimilatory (sulfite reductase (ferredoxin) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RLB8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.600e-38
Identity = 60/83 (72.29%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADEEVMVRMTGCPNGCARPYMAELAFVGDGPDSYQV 249
            V ++DPL+RLSMACPALP+CGLA TEAER MPSY+ER+R++L+K+ + +EE+++RMTGCPNGCARPYMAE+AFVGDGP SYQ+
Sbjct:  482 VEEVDPLSRLSMACPALPLCGLAQTEAERIMPSYIERVRSVLEKMNIGEEEILMRMTGCPNGCARPYMAEIAFVGDGPKSYQL 564
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9504.17643.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized4.170e-5296.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Assimilatory8.870e-4179.52sulfite reductase (ferredoxin) n=1 Tax=Tribonema m... [more]
Hypothetical8.800e-4071.08protein n=1 Tax=Cyclophora tenuis TaxID=216820 Rep... [more]
Assimilatory2.220e-3977.11sulfite reductase (ferredoxin) n=1 Tax=Fragilariop... [more]
Assimilatory4.280e-3977.11sulfite reductase (ferredoxin) n=1 Tax=Pseudo-nitz... [more]
Assimilatory5.990e-3977.11sulfite reductase (ferredoxin) n=2 Tax=Amphiprora ... [more]
Hypothetical1.850e-3872.29protein n=1 Tax=Proboscia inermis TaxID=420281 Rep... [more]
Assimilatory3.690e-3877.11sulfite reductase (ferredoxin) n=2 Tax=Fistulifera... [more]
Uncharacterized4.490e-3879.52protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Assimilatory5.600e-3872.29sulfite reductase (ferredoxin) n=2 Tax=Ditylum bri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9504contigEcto-sp9_F_contig9504:4466..5137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue4e-40
Seed eggNOG ortholog2880.D7FYK2
Preferred nameSIR1
KEGG rclassRC00065
KEGG koko:K00381,ko:K00392,ko:K02981
KEGG ReactionR00858,R00859,R03600
KEGG Pathwayko00920,ko01100,ko01120,ko03010,map00920,map01100,map01120,map03010
KEGG ModuleM00176,M00177
GOsGO:0000096,GO:0000097,GO:0000103,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005507,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006082,GO:0006275,GO:0006323,GO:0006355,GO:0006520,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009266,GO:0009295,GO:0009337,GO:0009403,GO:0009404,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009892,GO:0009941,GO:0009987,GO:0010319,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016002,GO:0016020,GO:0016043,GO:0016053,GO:0016491,GO:0016667,GO:0016673,GO:0017144,GO:0019219,GO:0019222,GO:0019418,GO:0019419,GO:0019424,GO:0019748,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031967,GO:0031975,GO:0032991,GO:0035770,GO:0036385,GO:0036464,GO:0042644,GO:0042646,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045892,GO:0045934,GO:0046394,GO:0046872,GO:0046914,GO:0048046,GO:0048519,GO:0048523,GO:0050311,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0055114,GO:0060255,GO:0065007,GO:0070813,GO:0070814,GO:0071103,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1900160,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.sulfite reductase (ferredoxin) activity
EggNOG OGsCOG0155@1,KOG0560@2759
EC1.8.1.2,1.8.7.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSulfite reductase
Ec32 orthologEc-02_004330.1
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.8843408-CDS-Ecto-sp9_F_contig9504:4465..45891622931035.8843408-CDS-Ecto-sp9_F_contig9504:4465..4589Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9504 4466..4589 -
1692279002.7178679-CDS-Ecto-sp9_F_contig9504:4465..45891692279002.7178679-CDS-Ecto-sp9_F_contig9504:4465..4589Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9504 4466..4589 -
1622931035.9004762-CDS-Ecto-sp9_F_contig9504:5006..51371622931035.9004762-CDS-Ecto-sp9_F_contig9504:5006..5137Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9504 5007..5137 -
1692279002.7362938-CDS-Ecto-sp9_F_contig9504:5006..51371692279002.7362938-CDS-Ecto-sp9_F_contig9504:5006..5137Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9504 5007..5137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9504.17643.1prot_Ecto-sp9_F_contig9504.17643.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9504 4466..5137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9504.17643.1

>prot_Ecto-sp9_F_contig9504.17643.1 ID=prot_Ecto-sp9_F_contig9504.17643.1|Name=mRNA_Ecto-sp9_F_contig9504.17643.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
VSQIDPLTRLSMACPALPMCGLAITEAERRMPSYVERIRAMLDKVGLADE
EVMVRMTGCPNGCARPYMAELAFVGDGPDSYQVS*
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mRNA from alignment at Ecto-sp9_F_contig9504:4466..5137-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9504.17643.1 ID=mRNA_Ecto-sp9_F_contig9504.17643.1|Name=mRNA_Ecto-sp9_F_contig9504.17643.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9504:4466..5137- (Ectocarpus species9 EcSCA_722f female)
GTCTCGCAGATCGACCCCCTGACGCGTCTGTCGATGGCTTGCCCCGCGCT
GCCCATGTGCGGCCTTGCCATCACCGAGGCTGAGCGCCGCATGCCGTCTT
ACGTGGAACGCATCCGCGCCATGCTCGACAAGTGAGTCATTTGTCTTAGT
CGTGTCTGTATTGCAAGAATATATCTTAATGCGAGTAGTAATCTTAATTG
CTGTTTTCTTTCACAAGTGAGTCATTAGTCATGCGTGTGATGCAAGATTA
ATCTCAATACGGGTAGTAATCGTAATTGCTGTTTTCTTTCACAAGTGAGT
CATTAGTCAGTCGTGTGTGTGATGCAAGATTAATCTTAATACGGGTAGTA
ATCTTAATTGCTGTTTTCTTTCACCGGAAGATTTGCCGTTTTGAAGAAAA
GAGACGGATCTCGCTACTTGTATCGTGGGTTGGAAATGGTTTCAATCTAA
GGTTTTTGTTGCCTGGGGTTAACCTTCTGTCGGCCTGCCTGCCTGCCTGC
CTGCCTGCCTTCGACCTAATTTCGCCCCTCTCACACACACGTTGCCAGGG
TGGGGCTGGCGGACGAGGAGGTGATGGTTCGAATGACGGGCTGCCCTAAC
GGATGCGCGCGGCCCTACATGGCCGAGCTCGCGTTCGTCGGAGACGGGCC
TGACTCGTACCAGGTGAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9504:4466..5137-

>mRNA_Ecto-sp9_F_contig9504.17643.1 ID=mRNA_Ecto-sp9_F_contig9504.17643.1|Name=mRNA_Ecto-sp9_F_contig9504.17643.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9504:4466..5137- (Ectocarpus species9 EcSCA_722f female)
GTCTCGCAGATCGACCCCCTGACGCGTCTGTCGATGGCTTGCCCCGCGCT
GCCCATGTGCGGCCTTGCCATCACCGAGGCTGAGCGCCGCATGCCGTCTT
ACGTGGAACGCATCCGCGCCATGCTCGACAAGTCTCGCAGATCGACCCCC
TGACGCGTCTGTCGATGGCTTGCCCCGCGCTGCCCATGTGCGGCCTTGCC
ATCACCGAGGCTGAGCGCCGCATGCCGTCTTACGTGGAACGCATCCGCGC
CATGCTCGACAAGGTGGGGCTGGCGGACGAGGAGGTGATGGTTCGAATGA
CGGGCTGCCCTAACGGATGCGCGCGGCCCTACATGGCCGAGCTCGCGTTC
GTCGGAGACGGGCCTGACTCGTACCAGGTGAGTTAAGGTGGGGCTGGCGG
ACGAGGAGGTGATGGTTCGAATGACGGGCTGCCCTAACGGATGCGCGCGG
CCCTACATGGCCGAGCTCGCGTTCGTCGGAGACGGGCCTGACTCGTACCA
GGTGAGTTAA
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