mRNA_Ecto-sp9_F_contig9500.17641.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9500.17641.1
Unique NamemRNA_Ecto-sp9_F_contig9500.17641.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9500.17641.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9500contigEcto-sp9_F_contig9500:5023..5226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-22_002170.1
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.6402702-CDS-Ecto-sp9_F_contig9500:5022..52261622931035.6402702-CDS-Ecto-sp9_F_contig9500:5022..5226Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9500 5023..5226 +
1692279002.6825917-CDS-Ecto-sp9_F_contig9500:5022..52261692279002.6825917-CDS-Ecto-sp9_F_contig9500:5022..5226Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9500 5023..5226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9500.17641.1prot_Ecto-sp9_F_contig9500.17641.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9500 5023..5226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9500.17641.1

>prot_Ecto-sp9_F_contig9500.17641.1 ID=prot_Ecto-sp9_F_contig9500.17641.1|Name=mRNA_Ecto-sp9_F_contig9500.17641.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=68bp
VVCCAHPSSPLLCHSSSLSSQRLNRWLFLENHSCPASLCTSGSPPSLRKS
PLVTHSREGLTPSVGLR*
back to top

mRNA from alignment at Ecto-sp9_F_contig9500:5023..5226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9500.17641.1 ID=mRNA_Ecto-sp9_F_contig9500.17641.1|Name=mRNA_Ecto-sp9_F_contig9500.17641.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9500:5023..5226+ (Ectocarpus species9 EcSCA_722f female)
GTGGTGTGCTGTGCACATCCCTCTTCACCCCTCCTCTGTCACTCTTCTTC
CCTCTCTTCCCAGAGACTAAACCGTTGGCTCTTCCTAGAGAACCACTCCT
GTCCCGCAAGTCTGTGCACTAGCGGCTCCCCACCGTCGCTCCGGAAGTCT
CCTCTGGTCACACATTCGAGAGAAGGTTTAACCCCTTCCGTCGGTCTGAG
ATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9500:5023..5226+

>mRNA_Ecto-sp9_F_contig9500.17641.1 ID=mRNA_Ecto-sp9_F_contig9500.17641.1|Name=mRNA_Ecto-sp9_F_contig9500.17641.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9500:5023..5226+ (Ectocarpus species9 EcSCA_722f female)
GTGGTGTGCTGTGCACATCCCTCTTCACCCCTCCTCTGTCACTCTTCTTC
CCTCTCTTCCCAGAGACTAAACCGTTGGCTCTTCCTAGAGAACCACTCCT
GTCCCGCAAGTCTGTGCACTAGCGGCTCCCCACCGTCGCTCCGGAAGTCT
CCTCTGGTCACACATTCGAGAGAAGGTTTAACCCCTTCCGTCGGTCTGAG
ATAGGTGGTGTGCTGTGCACATCCCTCTTCACCCCTCCTCTGTCACTCTT
CTTCCCTCTCTTCCCAGAGACTAAACCGTTGGCTCTTCCTAGAGAACCAC
TCCTGTCCCGCAAGTCTGTGCACTAGCGGCTCCCCACCGTCGCTCCGGAA
GTCTCCTCTGGTCACACATTCGAGAGAAGGTTTAACCCCTTCCGTCGGTC
TGAGATAG
back to top