mRNA_Ecto-sp9_F_contig9486.17622.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9486.17622.1
Unique NamemRNA_Ecto-sp9_F_contig9486.17622.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9486.17622.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9486contigEcto-sp9_F_contig9486:1741..2652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_004210.2
Exons2
Model size384
Cds size384
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.3389325-CDS-Ecto-sp9_F_contig9486:1740..18811622931031.3389325-CDS-Ecto-sp9_F_contig9486:1740..1881Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9486 1741..1881 +
1692279001.0057695-CDS-Ecto-sp9_F_contig9486:1740..18811692279001.0057695-CDS-Ecto-sp9_F_contig9486:1740..1881Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9486 1741..1881 +
1622931031.3581476-CDS-Ecto-sp9_F_contig9486:2409..26521622931031.3581476-CDS-Ecto-sp9_F_contig9486:2409..2652Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9486 2410..2652 +
1692279001.0164037-CDS-Ecto-sp9_F_contig9486:2409..26521692279001.0164037-CDS-Ecto-sp9_F_contig9486:2409..2652Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9486 2410..2652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9486.17622.1prot_Ecto-sp9_F_contig9486.17622.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9486 1741..2652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9486.17622.1

>prot_Ecto-sp9_F_contig9486.17622.1 ID=prot_Ecto-sp9_F_contig9486.17622.1|Name=mRNA_Ecto-sp9_F_contig9486.17622.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=128bp
MYPQSLSLCPLSLSHSSAVAGRERPLHSSSRGSPSSQGYLLCRDKQQRDP
KVGERSRAGGPPKTELERHPSIMPVRRRDSSRASSSSCRPEEEEEETLVV
GEGGGGGGGGIIDTEEPRIPVQRGGGDD
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mRNA from alignment at Ecto-sp9_F_contig9486:1741..2652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9486.17622.1 ID=mRNA_Ecto-sp9_F_contig9486.17622.1|Name=mRNA_Ecto-sp9_F_contig9486.17622.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=912bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9486:1741..2652+ (Ectocarpus species9 EcSCA_722f female)
ATGTATCCCCAGTCTCTCTCTCTCTGTCCTCTTTCTCTCTCGCACTCATC
GGCTGTCGCAGGGCGGGAGCGCCCGCTGCACTCGTCGTCGCGCGGTTCGC
CATCATCCCAAGGGTATCTACTGTGCCGTGACAAACAGCAGGTGTGTGTG
TGTCTATTCTACACATTTGGTGAAACGGACCTTGGCGAGGCAGATCGGAG
TATTAATCGTTTCACTGAGTTTTTCGGGTCATGGTCATGCATATGTTAGT
ACCTAGTCACGACGGCTGTGTATGATCACACGGTCGGTTCGGTTAGCCGT
TCTCCCACGCGGCTCCTAGCAGCTTCCCCAGGAGGGGGATCAGTGCGTGT
GATGGCGATGGTCTTGTTGTCTCCGTTGAGGGCTGGTGGGGCCTGACCGA
GTGTCGTCACGGCACGAAAGTTGGAGCCTAAAATATCGGGACTCTACATT
TCGGAGCGGAGCTTGTTTTTTGCTAACCCTCGGCTTGTTGGTTGGTGTGC
TGTCCCGCATGTATCACGCGCCCACCGCACAGGCGCACGCGTTTGAACGT
GCGGCTGGCTGGCTCCCTCCCTACTGCCGCCGCAATCCTCTTGATTCCCC
GCGCTGCTCTATTGGTCCCTTCCTCTCACGCGCGATTCGTGTGTACATGA
TCGTCATCCCTCTTGGCAGAGAGATCCGAAAGTTGGAGAGCGGAGCAGGG
CGGGCGGGCCGCCGAAAACGGAACTCGAGAGACATCCATCCATCATGCCC
GTAAGGCGGCGGGACTCCTCCCGTGCTTCTTCTTCTTCCTGCCGGCCGGA
GGAGGAGGAGGAGGAGACCTTGGTGGTAGGCGAAGGTGGCGGCGGCGGCG
GCGGCGGCATCATCGACACGGAAGAACCCAGAATCCCCGTTCAAAGGGGC
GGCGGCGATGAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9486:1741..2652+

>mRNA_Ecto-sp9_F_contig9486.17622.1 ID=mRNA_Ecto-sp9_F_contig9486.17622.1|Name=mRNA_Ecto-sp9_F_contig9486.17622.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9486:1741..2652+ (Ectocarpus species9 EcSCA_722f female)
ATGTATCCCCAGTCTCTCTCTCTCTGTCCTCTTTCTCTCTCGCACTCATC
GGCTGTCGCAGGGCGGGAGCGCCCGCTGCACTCGTCGTCGCGCGGTTCGC
CATCATCCCAAGGGTATCTACTGTGCCGTGACAAACAGCAGATGTATCCC
CAGTCTCTCTCTCTCTGTCCTCTTTCTCTCTCGCACTCATCGGCTGTCGC
AGGGCGGGAGCGCCCGCTGCACTCGTCGTCGCGCGGTTCGCCATCATCCC
AAGGGTATCTACTGTGCCGTGACAAACAGCAGAGAGATCCGAAAGTTGGA
GAGCGGAGCAGGGCGGGCGGGCCGCCGAAAACGGAACTCGAGAGACATCC
ATCCATCATGCCCGTAAGGCGGCGGGACTCCTCCCGTGCTTCTTCTTCTT
CCTGCCGGCCGGAGGAGGAGGAGGAGGAGACCTTGGTGGTAGGCGAAGGT
GGCGGCGGCGGCGGCGGCGGCATCATCGACACGGAAGAACCCAGAATCCC
CGTTCAAAGGGGCGGCGGCGATGATAGAGATCCGAAAGTTGGAGAGCGGA
GCAGGGCGGGCGGGCCGCCGAAAACGGAACTCGAGAGACATCCATCCATC
ATGCCCGTAAGGCGGCGGGACTCCTCCCGTGCTTCTTCTTCTTCCTGCCG
GCCGGAGGAGGAGGAGGAGGAGACCTTGGTGGTAGGCGAAGGTGGCGGCG
GCGGCGGCGGCGGCATCATCGACACGGAAGAACCCAGAATCCCCGTTCAA
AGGGGCGGCGGCGATGAT
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