mRNA_Ecto-sp9_F_contig9483.17621.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9483.17621.1
Unique NamemRNA_Ecto-sp9_F_contig9483.17621.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9483.17621.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC15_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 6.550e-91
Identity = 129/132 (97.73%), Postives = 131/132 (99.24%), Query Frame = 2 
Query:    2 KFIGNPNNAFVAQGVTALLFGGLHLAKYDQFVGKLAQPLCSLFGLEWGPGTVGPYMKLMGAYLVGVFFSDVLAYKSNSAGFKRGKIWHEMGSCIAVSALCITQMFSETPADVVPHAIAAFVFAGWYSYLSQQ 397
            KFIGNPNNAFVAQGVTALLFGGLHLAKYDQFVGKLAQPLCSLFGLEWGPGTVGPYMKL+GAYLVGVFFSDVLAYKSNSAGFKRGKIWHEMGSCIA+S LCITQMFSETPADVVPHAIAAFVFAGWYSYLSQQ
Sbjct:  143 KFIGNPNNAFVAQGVTALLFGGLHLAKYDQFVGKLAQPLCSLFGLEWGPGTVGPYMKLIGAYLVGVFFSDVLAYKSNSAGFKRGKIWHEMGSCIAISTLCITQMFSETPADVVPHAIAAFVFAGWYSYLSQQ 274
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9483.17621.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.550e-9197.73protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC15... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9483contigEcto-sp9_F_contig9483:249..2078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size402
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9483.17621.1prot_Ecto-sp9_F_contig9483.17621.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9483 249..2077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.266477-CDS-Ecto-sp9_F_contig9483:248..4191622931031.266477-CDS-Ecto-sp9_F_contig9483:248..419Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9483 249..419 +
1692279000.9722872-CDS-Ecto-sp9_F_contig9483:248..4191692279000.9722872-CDS-Ecto-sp9_F_contig9483:248..419Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9483 249..419 +
1622931031.2815719-CDS-Ecto-sp9_F_contig9483:1079..11641622931031.2815719-CDS-Ecto-sp9_F_contig9483:1079..1164Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9483 1080..1164 +
1692279000.9828365-CDS-Ecto-sp9_F_contig9483:1079..11641692279000.9828365-CDS-Ecto-sp9_F_contig9483:1079..1164Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9483 1080..1164 +
1622931031.29764-CDS-Ecto-sp9_F_contig9483:1934..20771622931031.29764-CDS-Ecto-sp9_F_contig9483:1934..2077Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9483 1935..2077 +
1692279000.9942718-CDS-Ecto-sp9_F_contig9483:1934..20771692279000.9942718-CDS-Ecto-sp9_F_contig9483:1934..2077Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9483 1935..2077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9483.17621.1

>prot_Ecto-sp9_F_contig9483.17621.1 ID=prot_Ecto-sp9_F_contig9483.17621.1|Name=mRNA_Ecto-sp9_F_contig9483.17621.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=133bp
KVHRQPQQCLRGPGRHRPPVRWPPPRQVRPVRGQACPAPVQPVRPGVGAW
HRGPLHEVDGSIPCGRLLLGRAGLQVQQRRLQARKDLARDGLLHRRLRPV
HHPDVLGDARRRRAPRHRRFCLRRVVQLPLAAV
back to top

mRNA from alignment at Ecto-sp9_F_contig9483:249..2078+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9483.17621.1 ID=mRNA_Ecto-sp9_F_contig9483.17621.1|Name=mRNA_Ecto-sp9_F_contig9483.17621.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1830bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9483:249..2078+ (Ectocarpus species9 EcSCA_722f female)
AAAGTTCATCGGCAACCCCAACAATGCCTTCGTGGCCCAGGGCGTCACCG
CCCTCCTGTTCGGTGGCCTCCACCTCGCCAAGTACGACCAGTTCGTGGGC
AAGCTTGCCCAGCCCCTGTGCAGCCTGTTCGGCCTGGAGTGGGGGCCTGG
CACCGTGGGCCCTTACATGAAGTGAGGGCCATATGTATTGTTTGTTGTTG
TTTGTCGTTGTCGTCTTCATCGCACGAAGTTGTTGTTGTCTTGACATTGA
AAAACGTTCCGGTCTCCGCTCACAGCTATACAGCAGTAATGTGTGAAAAC
GCCCTTTCCGCGCCAAAACCGAAAATTAAGGCTCAGCATTGTTTGAAGGG
AGGTGGAAGAGGAAGAGATTTAGACCCAGTGAAATTCGGGATCGATCGTA
CGTCTAAGCTGGTTCCTCAACGCGACCTTTCACCGGTTGGTTGTTGGGAC
ACGTGCGCGTTTTGTGTCTACTGAGTTACGGGCCACGGTAGAAAAACACG
TTTTTTACGAGACGGCTGTCGAGGGAAAGCCGGCGAGTTCGCTGTCCAGC
TACCCACCAGCTAGTGTTAGGCGTCTTCCCTTGGTGATCATGCACACACC
AAGACGGAGGGCCCACAACCGTTTCCTGTTGTTTGATTCTGTCGAAATAG
TAAATGAGAAAAACGATACTTTAACAGACCAAACTGTACGCGCCATGTCG
TCCGTGAGGTATGGCAATGATGTTCTCCTCTGTCGCGTACGTAACATGCA
CGTAACTGCTGTCTGTTGTTACGCGTCGTCTGTGCCTTGTCTTGCGTGCT
TGTGCGCCTTCTGTGCCTTGTCTGCGTGCAGGTTGATGGGAGCATACCTT
GTGGGCGTCTTCTTCTCGGACGTGCTGGCCTACAAGTCCAACAGCGCCGG
CTTCAAGCGCGGAAAGGTGCGATCCGCGACGGTTACATAATACATCACCA
GTTTTGTCTTTTCCTCCCAAGCCGTCTGTTACTATTGTTATTATTATTGT
TATTATTATTATTATTATTTATTTATTTGTTTTTTAATTTGTTCATTATG
ATTATTGTTGATGGGTATGCCGGTGTAGTCGTTTTCTCCTGCAGCCATGA
AGTCGAGGTCTTTCCGAAGGGAATATATCCCCGAGCCTTGCGCCTTATTT
ATTTATCAGCGTTGTTGCCCAAGACTCCATATTGAAGGGGTTCGGCAGAA
ATGGGGGGGGGGGGGTATCGTACGGGAGTGCATCTTCACCCCCCCGTCCT
GAATGTCTTCTTCAACACCTACCACTTGACGACCGTACAAGCAGTGTCTT
ATGTCTTCCGTGAATATTTTCCTTGAAATACGAAGGGCCAATAGGGTTGC
TGAGATTCTCTCGCGGTGAATTGGTGAAGGCAAGTGATCTCTGTGTGCCC
CCCGTCGGCACCCACCCACAGAGTTTCCGAAAGATAGCTTTAGCATAGAT
TGATAAGGCCCAACCCCGCGTCGAATTGTGATAATGGAACAACGTATACA
TGGAAGCGGTATGTTTCGTTGCTAATTTAAAGAAACACGCCGAGGAATGC
CGCCTGTTGTTTCTGTATTTCGATTTCGGTGTACGCTGCTGCTCCACTGA
GCCCCCCCCCCTCCCCTGGCGCCTTGCTGGGCATGAAATCGTGCTCCTGC
CTCGCCGTCTATTGTGCGACGATTCTTGTCGTCCAGATCTGGCACGAGAT
GGGCTCCTGCATCGCCGTCTCCGCCCTGTGCATCACCCAGATGTTCTCGG
AGACGCCCGCCGACGTCGTGCCCCACGCCATCGCCGCTTTTGTCTTCGCC
GGGTGGTACAGCTACCTCTCGCAGCAGTAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9483:249..2078+

>mRNA_Ecto-sp9_F_contig9483.17621.1 ID=mRNA_Ecto-sp9_F_contig9483.17621.1|Name=mRNA_Ecto-sp9_F_contig9483.17621.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9483:249..2078+ (Ectocarpus species9 EcSCA_722f female)
AAAGTTCATCGGCAACCCCAACAATGCCTTCGTGGCCCAGGGCGTCACCG
CCCTCCTGTTCGGTGGCCTCCACCTCGCCAAGTACGACCAGTTCGTGGGC
AAGCTTGCCCAGCCCCTGTGCAGCCTGTTCGGCCTGGAGTGGGGGCCTGG
CACCGTGGGCCCTTACATGAAAAAGTTCATCGGCAACCCCAACAATGCCT
TCGTGGCCCAGGGCGTCACCGCCCTCCTGTTCGGTGGCCTCCACCTCGCC
AAGTACGACCAGTTCGTGGGCAAGCTTGCCCAGCCCCTGTGCAGCCTGTT
CGGCCTGGAGTGGGGGCCTGGCACCGTGGGCCCTTACATGAAGTTGATGG
GAGCATACCTTGTGGGCGTCTTCTTCTCGGACGTGCTGGCCTACAAGTCC
AACAGCGCCGGCTTCAAGCGCGGAAAGGTTGATGGGAGCATACCTTGTGG
GCGTCTTCTTCTCGGACGTGCTGGCCTACAAGTCCAACAGCGCCGGCTTC
AAGCGCGGAAAGATCTGGCACGAGATGGGCTCCTGCATCGCCGTCTCCGC
CCTGTGCATCACCCAGATGTTCTCGGAGACGCCCGCCGACGTCGTGCCCC
ACGCCATCGCCGCTTTTGTCTTCGCCGGGTGGTACAGCTACCTCTCGCAG
CAGTAATCTGGCACGAGATGGGCTCCTGCATCGCCGTCTCCGCCCTGTGC
ATCACCCAGATGTTCTCGGAGACGCCCGCCGACGTCGTGCCCCACGCCAT
CGCCGCTTTTGTCTTCGCCGGGTGGTACAGCTACCTCTCGCAGCAGTA
back to top