mRNA_Ecto-sp9_F_contig9445.17597.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K691_9PHAE) HSP 1 Score: 501 bits (1289), Expect = 2.480e-171 Identity = 246/254 (96.85%), Postives = 248/254 (97.64%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
GRPLRPSLLWMDMRSA CAEQVA+TGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEV+ALGGVVGGISA AAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHG GMWGAYPDAVLPGLGV EGGQTSTGS IAWFRRLVSGGGE LVSYKTLNEEAEAVPIGCEGLV
Sbjct: 93 GRPLRPSLLWMDMRSAGCAEQVAKTGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVIALGGVVGGISAEAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGSGMWGAYPDAVLPGLGVAEGGQTSTGSVIAWFRRLVSGGGEELVSYKTLNEEAEAVPIGCEGLV 346
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Xylulose (kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM7_ECTSI) HSP 1 Score: 458 bits (1179), Expect = 3.180e-161 Identity = 224/228 (98.25%), Postives = 225/228 (98.68%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSG 684
GRPLRPSLLWMDMRSA CAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVVALG VVGGISAAAAQHLGLPEG+PVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGS IAWFRRLVSG
Sbjct: 93 GRPLRPSLLWMDMRSAGCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVVALGSVVGGISAAAAQHLGLPEGIPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSGIAWFRRLVSG 320
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Glycerol (kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT72_CHLSO) HSP 1 Score: 358 bits (918), Expect = 7.170e-116 Identity = 180/256 (70.31%), Postives = 207/256 (80.86%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTH--GWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
G+ LRP+LLWMDMRSA A +VA GD+AL VNS G GPVSAEWM+PKALWLK+NE E+F RA +CEYQDFINF LTGR ASVNN SIRWHYST GWP+S+L+KL L LQ KWPQEV+ LG VVGG++AAAA HLGLPEGLPVAQGGADA +GMVGLGV+ G++ALLTGSSHLHLG+T D+ HG G+WG YPDA+LPG+ +VEGGQTSTGSA+AW+RRLV G Y LNEEA AVP GCEG+V
Sbjct: 93 GKALRPALLWMDMRSAPQAAKVAACGDEALAVNSAGAGPVSAEWMVPKALWLKENEGEVFERAAVICEYQDFINFHLTGRWCASVNNVSIRWHYSTQRPGGWPISMLQKLGLEALQQKWPQEVLPLGAVVGGLTAAAAAHLGLPEGLPVAQGGADADIGMVGLGVIRPGQLALLTGSSHLHLGVT-DKVFHGKGIWGVYPDAILPGVHMVEGGQTSTGSAVAWYRRLV-----GEPDYAALNEEAAAVPPGCEGVV 342
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Glycerol (kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS4_9STRA) HSP 1 Score: 355 bits (912), Expect = 1.060e-114 Identity = 182/264 (68.94%), Postives = 205/264 (77.65%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMR----------SADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
G LRP LLWMDM A+CA V TGD ALRVNS G+GPVSAEWMIPKALWLK+NEP+ +A A YVCEYQDF+N RLTGRMVAS+NNASIRWHY + GWP SLL LDL+DL KWPQE++ LG V+GG++ AA HLGLPEGLPVAQGGADAFVG++GLGVVN GEMALLTGSSHLHLGL DR + G GMWG+Y DAVL GL VVEGGQTSTGS AWFR++V G VSY+ L+ EA AVP GCEGL+
Sbjct: 91 GNALRPCLLWMDMXXXXXXXXXRSGAECAPAVLATGDAALRVNSAGQGPVSAEWMIPKALWLKRNEPDTYAAAKYVCEYQDFMNLRLTGRMVASINNASIRWHYCSKRGWPTSLLAALDLSDLMEKWPQEMLELGAVIGGLTRDAAAHLGLPEGLPVAQGGADAFVGILGLGVVNPGEMALLTGSSHLHLGLV-DREISGGGMWGSYSDAVLHGLYVVEGGQTSTGSVAAWFRKIVGGDS---VSYQELDAEAAAVPPGCEGLL 350
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Glycerol (kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VDM7_9CHLO) HSP 1 Score: 347 bits (890), Expect = 1.580e-111 Identity = 174/256 (67.97%), Postives = 203/256 (79.30%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTH--GWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
G+ LRP+LLWMDMRSA A +VA GD+AL VN GG GPVSAEWMIPKALWL + EPE+F A +CEYQD++NF LTGRMVASVNNASIRWHYST GWP LL+ + L LQ KWPQEV+ LG VVGG++ AAA HLGLPEGLPVAQGGADA +GM+GLGV+ G++ALLTGSSHLHLG+T D+ HG G+WG YPDA+LPG+ +VEGGQTSTGSA+AW R+LV G Y+ LN EA AVP GCEGL+
Sbjct: 92 GQALRPALLWMDMRSAAQAARVAAAGDEALAVNGGGGGPVSAEWMIPKALWLAEKEPEVFEEAATICEYQDYLNFNLTGRMVASVNNASIRWHYSTQRPGGWPTGLLKAIGLEGLQAKWPQEVLPLGAVVGGLTPAAAAHLGLPEGLPVAQGGADADIGMIGLGVIKPGQLALLTGSSHLHLGVT-DKIFHGRGIWGVYPDALLPGVHMVEGGQTSTGSAVAWLRKLV-----GEPGYEALNAEAAAVPPGCEGLL 341
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Glycerol (kinase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PJ27_9CHLO) HSP 1 Score: 329 bits (843), Expect = 7.050e-108 Identity = 160/254 (62.99%), Postives = 200/254 (78.74%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
G+PLRP+LLWMDMRSA A QVA TGD AL+VNSGG GPVSAEWM+PKALWL + EP+ + A Y+CEYQD++N+ LTG MVAS++N S+RWHY+++ GWPVSLLEKL L+ L KWP+E++ LG VG ++A+AA HLGLPEGL VAQGG+DAF+GMVGLGVV G+MA+LTGSSHL LG+ LHG G++G YPDAV+PGL V+EGGQTSTGS + W + G +G Y+ +N A A+P GCEGL+
Sbjct: 93 GQPLRPALLWMDMRSAAQAAQVAATGDIALQVNSGGAGPVSAEWMVPKALWLSQEEPQTYQAASYICEYQDYMNYHLTGNMVASISNVSVRWHYNSSRGWPVSLLEKLGLSSLLDKWPKEILPLGATVGHLTASAAAHLGLPEGLLVAQGGSDAFIGMVGLGVVAPGQMAMLTGSSHLQLGMCA-APLHGRGIFGTYPDAVMPGLHVIEGGQTSTGSIVRWLSSTLIGQ-QGWPGYEAMNAAAAAIPPGCEGLL 344
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Glycerol (kinase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGK8_CHLVA) HSP 1 Score: 332 bits (851), Expect = 1.040e-105 Identity = 174/264 (65.91%), Postives = 204/264 (77.27%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTH--GWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMV--------GLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
G+ LRP+LLWMDMRSA A +VA GD+AL VN GG GPVSAEWM+PK LWL+++EPE+F A VCEYQDF+NF LTGR VAS+NNASIRWHYST GWP +L L L L KWP EV+ LG VVGG++AAAA+HLGLP+G+ VAQGGADA +GMV GLGV+ G++ALLTGSSHLHLG+T D+ HG GMWG YPDA+LPG+ VVEGGQTSTGSA+AW+RRLV G EG Y+ LN EAEAV GCEG+V
Sbjct: 96 GQALRPALLWMDMRSAAQAARVAACGDEALGVNGGGAGPVSAEWMVPKVLWLRESEPEVFEAAAGVCEYQDFVNFHLTGRWVASLNNASIRWHYSTRRAGGWPEGMLRTLGLEALLHKWPAEVLPLGAVVGGLTAAAAEHLGLPQGVVVAQGGADADIGMVRSGGGGGIGLGVIRPGQLALLTGSSHLHLGVT-DQVFHGKGMWGVYPDALLPGVHVVEGGQTSTGSAVAWYRRLV--GEEG---YEALNREAEAVAPGCEGVV 353
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Glycerol (kinase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W972_TETOB) HSP 1 Score: 332 bits (851), Expect = 1.560e-105 Identity = 163/254 (64.17%), Postives = 201/254 (79.13%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
G+PLRP+LLWMDMRSA A QVA TGD AL+VNSGG GPVSAEWM+PKALWL + EPE F A Y+CEYQD++NF LTGRMVAS++N S+RWHY+++ GWPVSLLEKL L+ L KWP++++ LG VG ++A+AA HLGLPEGL VAQGG+DAF+GMVGLGVV G+MA+LTGSSHL LG+ LHG G++G YPDAV+PGL V+EGGQTSTGS + W + G +G Y+ +N A A+P GCEGL+
Sbjct: 93 GQPLRPALLWMDMRSAAQAAQVAATGDIALQVNSGGAGPVSAEWMVPKALWLFQEEPETFQAATYICEYQDYLNFHLTGRMVASISNVSVRWHYNSSRGWPVSLLEKLGLSSLVDKWPRDILPLGAPVGHLTASAAAHLGLPEGLLVAQGGSDAFIGMVGLGVVEPGQMAMLTGSSHLQLGMCA-APLHGKGIFGTYPDAVMPGLHVIEGGQTSTGSIVRWLSSSLIGE-QGWPGYEAMNAAAAAIPPGCEGLL 344
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Glycerol (kinase (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SEI4_9CHLO) HSP 1 Score: 330 bits (845), Expect = 4.890e-105 Identity = 165/254 (64.96%), Postives = 194/254 (76.38%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHGWPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
G LRP+LLWMDMRSA ++V TGD L+VNSGG GPVSAEWM+PKALW+K+NEP +F A Y+CEYQDFINF LTGRM AS NA++RWHYS GWP SLL L L L+ KWP+EV+A G VGG++ AA+HLGLP GL VAQGGADA +GMVGLGVVN GE+ALLTGSSHLHLG+T R +HG G+WG Y DAV+ GL ++EGGQTSTGSA+ W R L++ SY LN AEA+P GCEGLV
Sbjct: 111 GVSLRPALLWMDMRSAPQTKEVLATGDPVLQVNSGGAGPVSAEWMVPKALWIKQNEPXVFEAATYICEYQDFINFHLTGRMCASRCNATVRWHYSPDRGWPSSLLRALGLEGLEAKWPKEVLAPGEPVGGLTQRAAEHLGLPAGLLVAQGGADAMIGMVGLGVVNDGELALLTGSSHLHLGMTR-RTMHGAGVWGTYKDAVIEGLNIIEGGQTSTGSAVNWLRLLLAE-----PSYDELNRAAEALPPGCEGLV 358
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Match: Carbohydrate (kinase n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545STC5_9PROT) HSP 1 Score: 321 bits (822), Expect = 1.570e-104 Identity = 162/255 (63.53%), Postives = 196/255 (76.86%), Query Frame = 1
Query: 1 GRPLRPSLLWMDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFARAHYVCEYQDFINFRLTGRMVASVNNASIRWHYSTTHG-WPVSLLEKLDLADLQGKWPQEVVALGGVVGGISAAAAQHLGLPEGLPVAQGGADAFVGMVGLGVVNSGEMALLTGSSHLHLGLTHDRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSAIAWFRRLVSGGGEGLVSYKTLNEEAEAVPIGCEGLV 762
G +RP+L+WMD+R+ A++VAETGD AL VNS G+GPVSAEWMIPKALWLK+NEP F RA +CEYQD+INF LTGR VAS+NNA++RWHY G + SLLEKL L LQ KWPQEV+ LG V+GG+++ AA+HLGL E LPVAQGGADAF+ M+GLGVV G+MA +TGSSHLHLGL D HG G+WG Y DA+LPG VVEGGQTSTGS +AW +RL+ + VSY LN EA A+P G +GL+
Sbjct: 93 GHAVRPALIWMDVRAVAEAQRVAETGDPALGVNSDGKGPVSAEWMIPKALWLKENEPANFERASTICEYQDYINFHLTGRRVASINNAAVRWHYMAEGGGYQSSLLEKLGLGALQEKWPQEVLPLGEVIGGLTSRAAEHLGLQEALPVAQGGADAFIAMIGLGVVRPGKMAFITGSSHLHLGLA-DHAFHGQGIWGTYADALLPGYHVVEGGQTSTGSIVAWLKRLL----DPAVSYDQLNAEAAALPPGSDGLI 342 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9445.17597.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9445.17597.1 >prot_Ecto-sp9_F_contig9445.17597.1 ID=prot_Ecto-sp9_F_contig9445.17597.1|Name=mRNA_Ecto-sp9_F_contig9445.17597.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=244bp MDMRSADCAEQVAETGDDALRVNSGGRGPVSAEWMIPKALWLKKNEPELFback to top mRNA from alignment at Ecto-sp9_F_contig9445:457..4904- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9445.17597.1 ID=mRNA_Ecto-sp9_F_contig9445.17597.1|Name=mRNA_Ecto-sp9_F_contig9445.17597.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4448bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9445:457..4904- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9445:457..4904- >mRNA_Ecto-sp9_F_contig9445.17597.1 ID=mRNA_Ecto-sp9_F_contig9445.17597.1|Name=mRNA_Ecto-sp9_F_contig9445.17597.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9445:457..4904- (Ectocarpus species9 EcSCA_722f female)back to top |