mRNA_Ecto-sp9_F_contig9442.17594.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9442.17594.1
Unique NamemRNA_Ecto-sp9_F_contig9442.17594.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9442.17594.1 vs.
Match: Btz (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.240e-8
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   19 YPDQQQQHSSPVPVPWSVAGEGAVPSAGP 105
            YPDQ  QHSSPVPVPWSVAGEGA PSAGP
Sbjct:  885 YPDQXXQHSSPVPVPWSVAGEGAAPSAGP 913
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9442.17594.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Btz4.240e-889.66domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9442contigEcto-sp9_F_contig9442:2288..3270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931027.1771355-CDS-Ecto-sp9_F_contig9442:2288..24351622931027.1771355-CDS-Ecto-sp9_F_contig9442:2288..2435Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9442 2289..2435 -
1692278998.9118872-CDS-Ecto-sp9_F_contig9442:2288..24351692278998.9118872-CDS-Ecto-sp9_F_contig9442:2288..2435Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9442 2289..2435 -
1622931027.195086-CDS-Ecto-sp9_F_contig9442:3213..32701622931027.195086-CDS-Ecto-sp9_F_contig9442:3213..3270Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9442 3214..3270 -
1692278998.9265673-CDS-Ecto-sp9_F_contig9442:3213..32701692278998.9265673-CDS-Ecto-sp9_F_contig9442:3213..3270Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9442 3214..3270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9442.17594.1prot_Ecto-sp9_F_contig9442.17594.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9442 2289..3270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9442.17594.1

>prot_Ecto-sp9_F_contig9442.17594.1 ID=prot_Ecto-sp9_F_contig9442.17594.1|Name=mRNA_Ecto-sp9_F_contig9442.17594.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=68bp
AGGGDWYPDQQQQHSSPVPVPWSVAGEGAVPSAGPPAGGGAVLTEDVVLP
PPQADSWMRTAVQQELLR
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mRNA from alignment at Ecto-sp9_F_contig9442:2288..3270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9442.17594.1 ID=mRNA_Ecto-sp9_F_contig9442.17594.1|Name=mRNA_Ecto-sp9_F_contig9442.17594.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=983bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9442:2288..3270- (Ectocarpus species9 EcSCA_722f female)
GCGGGGGGCGGCGACTGGTACCCGGATCAGCAGCAGCAGCACTCTAGTCC
TGTGCCGGTGAGATGAAATGAGTTGTAGGAGGCGTACAGACGGAGATGGG
AAGTGGGGGAAGTTTTGTATGTAGGAAGAGGCGGCGACTTAGAAAGGGGG
TTGTGTGTAGGAAGGAGAGGTAACGATGGAGAGATTGTTTGTTCAGACAG
TGAGAGGTAGCTGTAGAGATACCGTTTGTTCAGACAGTGTTTGAGACTAC
CAGGTACGGCAAGAGGGGGGAAATAGAGGGCGGAGGCGGGAGAGGAAGAG
ATAACGAAGAGAGAGGCAGAGGCACAGTCAGAGAGAGAGAGAGAGAGACA
GCGAGAAACACGCACAGACAGAAAGACAGAGAGACAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGGACGTCGTGGGTGTGCGTGGATATTTGTGAACAAC
GTCAAGGGTATCACTTTTCCAGAGGTGCCCCGAACTTCTTATCCAACATT
TAGATTTTTTCGTGACCTACGGGCAGCCACCGAGCGTGTCTGGTATCTAT
CTAGTGAGCGGTGGAGCAAACACTCGTGCCTCACCGTGACGTTGTCGTGC
CTTACTGCATGCGCGTATATCTGCCACCCCGGATATGTATAGCATAGCTA
CTCGTATTTTCAACACGGGATCATGTTGTTTTTGTCTTCACATTGAAAAC
CGTTCCGATCTCTCCGCGCAGAACCTCCATTTACAACTGATTTACCCGTA
TGTACAACCGTCTTCTTCTCGTCTCCCCGTGTCTTCCAATCCTCCGTGCT
AAATCCGGTGCTAATACACATCACTAACATGACAGGTGCCGTGGAGCGTG
GCCGGGGAGGGTGCGGTCCCATCCGCGGGACCCCCGGCGGGCGGCGGCGC
GGTCTTGACGGAGGACGTGGTGCTTCCCCCTCCTCAGGCCGATAGCTGGA
TGAGGACGGCGGTACAGCAAGAGCTCCTGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9442:2288..3270-

>mRNA_Ecto-sp9_F_contig9442.17594.1 ID=mRNA_Ecto-sp9_F_contig9442.17594.1|Name=mRNA_Ecto-sp9_F_contig9442.17594.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9442:2288..3270- (Ectocarpus species9 EcSCA_722f female)
GCGGGGGGCGGCGACTGGTACCCGGATCAGCAGCAGCAGCACTCTAGTCC
TGTGCCGGCGGGGGGCGGCGACTGGTACCCGGATCAGCAGCAGCAGCACT
CTAGTCCTGTGCCGGTGCCGTGGAGCGTGGCCGGGGAGGGTGCGGTCCCA
TCCGCGGGACCCCCGGCGGGCGGCGGCGCGGTCTTGACGGAGGACGTGGT
GCTTCCCCCTCCTCAGGCCGATAGCTGGATGAGGACGGCGGTACAGCAAG
AGCTCCTGAGGGTGCCGTGGAGCGTGGCCGGGGAGGGTGCGGTCCCATCC
GCGGGACCCCCGGCGGGCGGCGGCGCGGTCTTGACGGAGGACGTGGTGCT
TCCCCCTCCTCAGGCCGATAGCTGGATGAGGACGGCGGTACAGCAAGAGC
TCCTGAGG
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