mRNA_Ecto-sp9_F_contig942.17575.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig942.17575.1
Unique NamemRNA_Ecto-sp9_F_contig942.17575.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig942.17575.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig942contigEcto-sp9_F_contig942:21740..23650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_000380.1
Exons1
Model size1911
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig942.17575.1prot_Ecto-sp9_F_contig942.17575.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig942 21946..22266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.7634737-UTR-Ecto-sp9_F_contig942:21739..219451622931023.7634737-UTR-Ecto-sp9_F_contig942:21739..21945Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig942 21740..21945 +
1692278997.6407206-UTR-Ecto-sp9_F_contig942:21739..219451692278997.6407206-UTR-Ecto-sp9_F_contig942:21739..21945Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig942 21740..21945 +
1622931023.7930756-UTR-Ecto-sp9_F_contig942:22266..236501622931023.7930756-UTR-Ecto-sp9_F_contig942:22266..23650Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig942 22267..23650 +
1692278997.6635149-UTR-Ecto-sp9_F_contig942:22266..236501692278997.6635149-UTR-Ecto-sp9_F_contig942:22266..23650Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig942 22267..23650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.7800593-CDS-Ecto-sp9_F_contig942:21945..222661622931023.7800593-CDS-Ecto-sp9_F_contig942:21945..22266Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 21946..22266 +
1692278997.6538684-CDS-Ecto-sp9_F_contig942:21945..222661692278997.6538684-CDS-Ecto-sp9_F_contig942:21945..22266Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig942 21946..22266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig942.17575.1

>prot_Ecto-sp9_F_contig942.17575.1 ID=prot_Ecto-sp9_F_contig942.17575.1|Name=mRNA_Ecto-sp9_F_contig942.17575.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
MASLPHGFLDCCAKSCRRASPVAACGSERRATAMLSALLVAINSHHLTHA
HAHLLSLVRVDVCFCCAFITFCVGIPRGPIIVLACMSGCTRMHGVFSVPL
STRNDL*
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mRNA from alignment at Ecto-sp9_F_contig942:21740..23650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig942.17575.1 ID=mRNA_Ecto-sp9_F_contig942.17575.1|Name=mRNA_Ecto-sp9_F_contig942.17575.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1911bp|location=Sequence derived from alignment at Ecto-sp9_F_contig942:21740..23650+ (Ectocarpus species9 EcSCA_722f female)
CTCTTGGTGCTGGGATCTTGGTATGCTTGGCAGCGTAAAATAGCGCTTTG
CACAGCAGTGCTGCTAGATCTAGCGAGCTTGTCCGTTGCCATGCGAGGGG
TTGCGTCAAGCAACGCTGCACTCGTGTATTGCTTCTAGCTTTCCGTACGT
TTTTCCGTTAATACCCTAAAGTTGATTTTCCGGGCTTTCGGGGTACATTG
CACTTGATGGCCAGTCTGCCACACGGCTTTCTTGACTGCTGTGCTAAATC
TTGTCGTCGTGCTTCGCCTGTGGCAGCTTGTGGCTCAGAGCGTCGCGCGA
CAGCAATGCTGAGTGCATTGCTCGTGGCGATCAATTCACACCATCTTACG
CATGCACACGCGCACCTTCTCTCCCTTGTGCGTGTGGATGTTTGTTTTTG
TTGTGCTTTTATCACGTTTTGCGTAGGGATTCCCCGCGGTCCGATCATTG
TTTTGGCGTGTATGTCTGGGTGTACTCGTATGCATGGTGTTTTTTCAGTG
CCGCTATCTACTAGAAACGACCTTTAAATTTTCGGAGCTAAATTTTCCTG
GAACGTTCTTGAGTTGCCAGTGAGAGTGCGTGTTAAAAAAACCCAATTTT
GTGGGCTCGGGGCGCAAGATTAGGTCACGTTGGGGCGCCCACCCCAGTAG
AAATAGCCAGCCTGAGTAGACCAGGCTGCTGTGCCACCACACAGCAGGTA
GAGATATTCTTTGTTTCTGACATGGTGGGGACGCTAATATTGAAAAGTCT
CCCCACGTCCCCCTTGATCGTTCATTCATTTGTGTATTTTTCATATTTTG
GATGGTTTGCTGCATGTTGCTTTTATTTTTGAGACTGACTGATTGCTGCT
GTGGAGGACACTTGACAAGTCTCTTAGCGTCGGCAGGTCGATAATTGGGC
GAGCCCTTGAATTTCGTAAGTAGATTGTTAGCTGAGGTATAGAGATAGGT
TTAAACGGAGCGTGCTGTTGTAGCCCTGGTTACCGTAGTCTGGACTTTGC
TGCTCCCCTTCTTGGAGTAATAGTAGTAGTAGGCCCAACGTGTGCGGTGG
GGTGGTTCATATAGCGAGGCAGCGCATTTTTAGTGTACATTGCACGAGTT
CACGGCTGAGGATCGCGGCAGGCAACAAATTATTGTGGAGAAAGAGGACG
AGAGACGGAGAGAGAGATTGTTGGGAGGGGGGTGCCGAGTCCGAAATAGT
TGGCCATGTTCAGAACCATGCAAGGACGGAATGCGCACAAGCTCATACAT
ATACATGCATGCGTCCGTGTAGCTGAGGACCATGCGAACGAGGAGGATCA
CAAAGGTGGAGTACATCACAAGGAGCAGGGGGAAGTTAGAAAGAAGGGCC
GGTTAGGTGCGACACTAAGCAGATTGAGGTGTATCGACGGGTGAGAGTTT
CTTTTTTACGACGCTTCGCGGCAACACGTTGTAATAGTTGCACTGCAGAA
ACTTGACGTTGTTGTAGACTTGTGCTTGAACCAGCGTTCTTCGTTTCTTT
TTTTCCTTCGTTTTCGAGAGGGAAAGCGACATGTGACATCGCGTAATAAT
TGATTTGTGATTGTTTGCCCCTCCTCTTTCTATATCAGGTTTGTCCGCTT
TGTCGTGGGGATCACACCACCGCAGGAACAGGCTGTGTCTGTCTGTGGTC
TGCGTGTGGCCCTCTGTGTGCCCCCGACTTCGTGGTGCTTTTCAAAACTC
GCCTATTTGGTGGTTGATGCACAAATCGGGGAGAACTTCCAGAGTGATTC
GTTGGACGAGATATATATACGCAGAAGGCTGAGGACGCGTCCGTTAAATA
AAGTGGCCAGCCGTTTGCTGTTTGCGCACGCAGTCGATCGATGCTGATGA
TGATGACTGTACGAAAATAGTCTGTACACGCAATCCCTCTTCATGTGATC
GTATACATCCA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig942:21740..23650+

>mRNA_Ecto-sp9_F_contig942.17575.1 ID=mRNA_Ecto-sp9_F_contig942.17575.1|Name=mRNA_Ecto-sp9_F_contig942.17575.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig942:21740..23650+ (Ectocarpus species9 EcSCA_722f female)
ATGGCCAGTCTGCCACACGGCTTTCTTGACTGCTGTGCTAAATCTTGTCG
TCGTGCTTCGCCTGTGGCAGCTTGTGGCTCAGAGCGTCGCGCGACAGCAA
TGCTGAGTGCATTGCTCGTGGCGATCAATTCACACCATCTTACGCATGCA
CACGCGCACCTTCTCTCCCTTGTGCGTGTGGATGTTTGTTTTTGTTGTGC
TTTTATCACGTTTTGCGTAGGGATTCCCCGCGGTCCGATCATTGTTTTGG
CGTGTATGTCTGGGTGTACTCGTATGCATGGTGTTTTTTCAGTGCCGCTA
TCTACTAGAAACGACCTTTAAATGGCCAGTCTGCCACACGGCTTTCTTGA
CTGCTGTGCTAAATCTTGTCGTCGTGCTTCGCCTGTGGCAGCTTGTGGCT
CAGAGCGTCGCGCGACAGCAATGCTGAGTGCATTGCTCGTGGCGATCAAT
TCACACCATCTTACGCATGCACACGCGCACCTTCTCTCCCTTGTGCGTGT
GGATGTTTGTTTTTGTTGTGCTTTTATCACGTTTTGCGTAGGGATTCCCC
GCGGTCCGATCATTGTTTTGGCGTGTATGTCTGGGTGTACTCGTATGCAT
GGTGTTTTTTCAGTGCCGCTATCTACTAGAAACGACCTTTAA
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