mRNA_Ecto-sp9_F_contig9414.17568.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9414.17568.1
Unique NamemRNA_Ecto-sp9_F_contig9414.17568.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9414.17568.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK5_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.750e-18
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 PRFPAPVNAAEDDEPVEGRAWPGEDKVTVCHEQPGNGTLTGAESDADAPPGS 156
            P FPAPV+AAEDDE VE    PGED+VTVC  QPGNGTLTG E DADAPPGS
Sbjct:   13 PGFPAPVDAAEDDEAVEDGVRPGEDEVTVCRGQPGNGTLTGVELDADAPPGS 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9414.17568.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.750e-1876.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9414contigEcto-sp9_F_contig9414:4258..4848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931023.003303-CDS-Ecto-sp9_F_contig9414:4257..44231622931023.003303-CDS-Ecto-sp9_F_contig9414:4257..4423Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9414 4258..4423 +
1692278997.3749123-CDS-Ecto-sp9_F_contig9414:4257..44231692278997.3749123-CDS-Ecto-sp9_F_contig9414:4257..4423Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9414 4258..4423 +
1622931023.043198-CDS-Ecto-sp9_F_contig9414:4816..48481622931023.043198-CDS-Ecto-sp9_F_contig9414:4816..4848Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9414 4817..4848 +
1692278997.385421-CDS-Ecto-sp9_F_contig9414:4816..48481692278997.385421-CDS-Ecto-sp9_F_contig9414:4816..4848Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9414 4817..4848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9414.17568.1prot_Ecto-sp9_F_contig9414.17568.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9414 4258..4848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9414.17568.1

>prot_Ecto-sp9_F_contig9414.17568.1 ID=prot_Ecto-sp9_F_contig9414.17568.1|Name=mRNA_Ecto-sp9_F_contig9414.17568.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=66bp
PRFPAPVNAAEDDEPVEGRAWPGEDKVTVCHEQPGNGTLTGAESDADAPP
GSVEVGGGAGYSTPG*
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mRNA from alignment at Ecto-sp9_F_contig9414:4258..4848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9414.17568.1 ID=mRNA_Ecto-sp9_F_contig9414.17568.1|Name=mRNA_Ecto-sp9_F_contig9414.17568.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=591bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9414:4258..4848+ (Ectocarpus species9 EcSCA_722f female)
CCCCGGTTTCCCGCTCCCGTTAACGCCGCCGAGGACGACGAACCGGTCGA
GGGTAGAGCTTGGCCTGGAGAAGATAAAGTTACGGTCTGCCACGAGCAAC
CCGGGAATGGAACCTTGACGGGTGCCGAATCGGATGCGGACGCTCCGCCT
GGGAGTGTGGAGGTAGGTTTCCGCGAGGGCTAGGGCTGCGTCAATCGTTT
CCGATTCCTAGAGTGACAGGACCAACCCTTGAGTTCGCGGTTACTTGGCG
AGGAGGGTCGAATTTGCTGGGTGCGGCAGGGTCTACTACGCGTGTTGATT
CGCGCGGAAATATTTGTGTTGCTGTGCGTTCGAAAAATGCATGTTTATGT
AGCTCTCCACCCTCTCCTCTTCGTGCCGCATGTCCTGTTATATGTCATTT
TTTGTTTTCGTTTCTTCTTTCCCCGTTGCCTTCGAACGCCGGCAGTTTCT
CGACGTGCACCGACAGATTCCGTCGTCACTGCCTCGTCCGTGTTGCAAAC
CTCGGGTAACGTCTCGTTCCCCATGCATCTTTCGCTCCATCCACTGCTGT
TCCCCACAGGTGGGGGTGCCGGGTACTCCACCCCGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9414:4258..4848+

>mRNA_Ecto-sp9_F_contig9414.17568.1 ID=mRNA_Ecto-sp9_F_contig9414.17568.1|Name=mRNA_Ecto-sp9_F_contig9414.17568.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9414:4258..4848+ (Ectocarpus species9 EcSCA_722f female)
CCCCGGTTTCCCGCTCCCGTTAACGCCGCCGAGGACGACGAACCGGTCGA
GGGTAGAGCTTGGCCTGGAGAAGATAAAGTTACGGTCTGCCACGAGCAAC
CCGGGAATGGAACCTTGACGGGTGCCGAATCGGATGCGGACGCTCCGCCT
GGGAGTGTGGAGGTAGCCCCGGTTTCCCGCTCCCGTTAACGCCGCCGAGG
ACGACGAACCGGTCGAGGGTAGAGCTTGGCCTGGAGAAGATAAAGTTACG
GTCTGCCACGAGCAACCCGGGAATGGAACCTTGACGGGTGCCGAATCGGA
TGCGGACGCTCCGCCTGGGAGTGTGGAGGTAGGTGGGGGTGCCGGGTACT
CCACCCCGGGGTGAGTGGGGGTGCCGGGTACTCCACCCCGGGGTGA
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