mRNA_Ecto-sp9_F_contig9368.17528.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9368.17528.1
Unique NamemRNA_Ecto-sp9_F_contig9368.17528.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9368.17528.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9368contigEcto-sp9_F_contig9368:3342..3551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_001910.1
Exons1
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.919071-CDS-Ecto-sp9_F_contig9368:3341..35511622931016.919071-CDS-Ecto-sp9_F_contig9368:3341..3551Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9368 3342..3551 -
1692278994.4492621-CDS-Ecto-sp9_F_contig9368:3341..35511692278994.4492621-CDS-Ecto-sp9_F_contig9368:3341..3551Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9368 3342..3551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9368.17528.1prot_Ecto-sp9_F_contig9368.17528.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9368 3342..3551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9368.17528.1

>prot_Ecto-sp9_F_contig9368.17528.1 ID=prot_Ecto-sp9_F_contig9368.17528.1|Name=mRNA_Ecto-sp9_F_contig9368.17528.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=70bp
MAALGGEQRQHQFFLRQCCEVEVLIYFFMCWARGSSPWRRVGGLCSVGVV
LEPEGVNGFFRFDRQQHQK*
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mRNA from alignment at Ecto-sp9_F_contig9368:3342..3551-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9368.17528.1 ID=mRNA_Ecto-sp9_F_contig9368.17528.1|Name=mRNA_Ecto-sp9_F_contig9368.17528.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9368:3342..3551- (Ectocarpus species9 EcSCA_722f female)
ATGGCCGCGCTAGGTGGCGAACAGAGGCAGCACCAGTTTTTCTTACGGCA
GTGCTGTGAAGTAGAAGTATTGATTTATTTTTTTATGTGTTGGGCTCGTG
GGTCGTCTCCATGGCGCCGGGTGGGGGGTCTGTGCAGCGTTGGGGTAGTC
CTCGAGCCGGAAGGTGTGAATGGCTTCTTCCGCTTCGATCGGCAGCAGCA
TCAAAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9368:3342..3551-

>mRNA_Ecto-sp9_F_contig9368.17528.1 ID=mRNA_Ecto-sp9_F_contig9368.17528.1|Name=mRNA_Ecto-sp9_F_contig9368.17528.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9368:3342..3551- (Ectocarpus species9 EcSCA_722f female)
ATGGCCGCGCTAGGTGGCGAACAGAGGCAGCACCAGTTTTTCTTACGGCA
GTGCTGTGAAGTAGAAGTATTGATTTATTTTTTTATGTGTTGGGCTCGTG
GGTCGTCTCCATGGCGCCGGGTGGGGGGTCTGTGCAGCGTTGGGGTAGTC
CTCGAGCCGGAAGGTGTGAATGGCTTCTTCCGCTTCGATCGGCAGCAGCA
TCAAAAGTAGATGGCCGCGCTAGGTGGCGAACAGAGGCAGCACCAGTTTT
TCTTACGGCAGTGCTGTGAAGTAGAAGTATTGATTTATTTTTTTATGTGT
TGGGCTCGTGGGTCGTCTCCATGGCGCCGGGTGGGGGGTCTGTGCAGCGT
TGGGGTAGTCCTCGAGCCGGAAGGTGTGAATGGCTTCTTCCGCTTCGATC
GGCAGCAGCATCAAAAGTAG
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