mRNA_Ecto-sp9_F_contig9361.17526.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9361.17526.1
Unique NamemRNA_Ecto-sp9_F_contig9361.17526.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9361.17526.1 vs.
Match: BTB (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB9_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 9.040e-46
Identity = 89/100 (89.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 GDFLALFEEVAAESVAAEGGEEIPPPRPTQAGHVAKSHSDEKKKRQPTPGPVTSFAQGNGKGEPPRVSGDGKGEGGVLVSGEKGRAAGYKDVGKRPAEAE 300
            GDFLALFEE+AAESVAAEG EEI PPRPTQAGH AK+HSDEKKKRQPTPGPVTSFAQGN KGE PR SGDGKGEG VLV GEK RAAGYKDVGKRPAEAE
Sbjct:  780 GDFLALFEEIAAESVAAEGREEISPPRPTQAGHAAKAHSDEKKKRQPTPGPVTSFAQGNDKGELPRASGDGKGEGSVLVPGEKRRAAGYKDVGKRPAEAE 879
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BLAST of mRNA_Ecto-sp9_F_contig9361.17526.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8N9_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.140e-40
Identity = 82/100 (82.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 GDFLALFEEVAAESVAAEGGEEIPPPRPTQAGHVAKSHSDEKKKRQPTPGPVTSFAQGNGKGEPPRVSGDGKGEGGVLVSGEKGRAAGYKDVGKRPAEAE 300
            GDFLALFEEVAAESVAAEGG+EI  PRPT AGH AK+  DEKK RQPTPGPVTSFAQGN KGEP R++GDG GEGGVL  GEK RAAGYKDVG+RPAEAE
Sbjct:  409 GDFLALFEEVAAESVAAEGGKEISLPRPTHAGHAAKARLDEKK-RQPTPGPVTSFAQGNDKGEPSRIAGDGNGEGGVLEPGEKARAAGYKDVGERPAEAE 507
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9361.17526.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
BTB9.040e-4689.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.140e-4082.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9361contigEcto-sp9_F_contig9361:4946..5245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.6e-40
Seed eggNOG ortholog2880.D7FVB9
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931016.7341268-CDS-Ecto-sp9_F_contig9361:4945..52451622931016.7341268-CDS-Ecto-sp9_F_contig9361:4945..5245Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9361 4946..5245 +
1692278994.3424118-CDS-Ecto-sp9_F_contig9361:4945..52451692278994.3424118-CDS-Ecto-sp9_F_contig9361:4945..5245Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9361 4946..5245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9361.17526.1prot_Ecto-sp9_F_contig9361.17526.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9361 4946..5245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9361.17526.1

>prot_Ecto-sp9_F_contig9361.17526.1 ID=prot_Ecto-sp9_F_contig9361.17526.1|Name=mRNA_Ecto-sp9_F_contig9361.17526.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=100bp
GDFLALFEEVAAESVAAEGGEEIPPPRPTQAGHVAKSHSDEKKKRQPTPG
PVTSFAQGNGKGEPPRVSGDGKGEGGVLVSGEKGRAAGYKDVGKRPAEAE
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mRNA from alignment at Ecto-sp9_F_contig9361:4946..5245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9361.17526.1 ID=mRNA_Ecto-sp9_F_contig9361.17526.1|Name=mRNA_Ecto-sp9_F_contig9361.17526.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9361:4946..5245+ (Ectocarpus species9 EcSCA_722f female)
GGCGATTTCCTCGCGCTGTTCGAAGAGGTCGCCGCCGAGTCGGTTGCCGC
GGAGGGAGGAGAGGAGATACCGCCGCCCCGCCCCACACAAGCCGGCCACG
TCGCGAAATCCCACTCGGATGAGAAGAAGAAGAGACAGCCAACCCCCGGC
CCCGTCACTTCCTTCGCCCAAGGCAACGGCAAGGGAGAGCCCCCGAGGGT
TTCCGGTGATGGAAAAGGAGAAGGAGGCGTCCTCGTGTCCGGGGAGAAGG
GAAGAGCTGCTGGCTACAAAGACGTTGGTAAACGTCCTGCAGAGGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9361:4946..5245+

>mRNA_Ecto-sp9_F_contig9361.17526.1 ID=mRNA_Ecto-sp9_F_contig9361.17526.1|Name=mRNA_Ecto-sp9_F_contig9361.17526.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9361:4946..5245+ (Ectocarpus species9 EcSCA_722f female)
GGCGATTTCCTCGCGCTGTTCGAAGAGGTCGCCGCCGAGTCGGTTGCCGC
GGAGGGAGGAGAGGAGATACCGCCGCCCCGCCCCACACAAGCCGGCCACG
TCGCGAAATCCCACTCGGATGAGAAGAAGAAGAGACAGCCAACCCCCGGC
CCCGTCACTTCCTTCGCCCAAGGCAACGGCAAGGGAGAGCCCCCGAGGGT
TTCCGGTGATGGAAAAGGAGAAGGAGGCGTCCTCGTGTCCGGGGAGAAGG
GAAGAGCTGCTGGCTACAAAGACGTTGGTAAACGTCCTGCAGAGGCGGAG
GGCGATTTCCTCGCGCTGTTCGAAGAGGTCGCCGCCGAGTCGGTTGCCGC
GGAGGGAGGAGAGGAGATACCGCCGCCCCGCCCCACACAAGCCGGCCACG
TCGCGAAATCCCACTCGGATGAGAAGAAGAAGAGACAGCCAACCCCCGGC
CCCGTCACTTCCTTCGCCCAAGGCAACGGCAAGGGAGAGCCCCCGAGGGT
TTCCGGTGATGGAAAAGGAGAAGGAGGCGTCCTCGTGTCCGGGGAGAAGG
GAAGAGCTGCTGGCTACAAAGACGTTGGTAAACGTCCTGCAGAGGCGGAG
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