mRNA_Ecto-sp9_F_contig9352.17516.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9352.17516.1
Unique NamemRNA_Ecto-sp9_F_contig9352.17516.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG26_ECTSI)

HSP 1 Score: 565 bits (1456), Expect = 2.150e-195
Identity = 274/282 (97.16%), Postives = 277/282 (98.23%), Query Frame = 1
Query:  295 QLTEADEAMLSDSEADYDAFDNNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
            +LTEADEAMLSDSEADYDAFDNNSERV KKLFSPNFRFLRWYATFMLVALLTFVFY PIRIAFFPSERGAWYGIDL WHLVFAIDVLVHLNTGFVDGT+GKVVYSRMAICRRYAK ALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTP EQ+
Sbjct:  203 KLTEADEAMLSDSEADYDAFDNNSERVDKKLFSPNFRFLRWYATFMLVALLTFVFYNPIRIAFFPSERGAWYGIDLVWHLVFAIDVLVHLNTGFVDGTDGKVVYSRMAICRRYAKHALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPPEQI 484          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6P9_9PHAE)

HSP 1 Score: 500 bits (1288), Expect = 1.760e-170
Identity = 241/274 (87.96%), Postives = 257/274 (93.80%), Query Frame = 1
Query:  319 MLSDSEADYDAFDNNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
            MLSDSEADYDAFDN+SERVG KLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAW+GIDLAWH++FAIDVLVHLNTGFVDGT GKVVYSRMAI +RYAK ALIVDLLAA PFTF+PGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEG FLAVRTLL VV+TAHLFGCGWYMLATLL TEC+DLYF+GL E + +F    +Y  G+YIASECPWIYRNDYVALS+GRRYLGSVYWALTTLTTVGYGD+SARTPAEQ+
Sbjct:    1 MLSDSEADYDAFDNDSERVGTKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWFGIDLAWHVLFAIDVLVHLNTGFVDGTTGKVVYSRMAIGQRYAKGALIVDLLAALPFTFVPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGMFLAVRTLLCVVMTAHLFGCGWYMLATLLRTECDDLYFDGLAEEDLIF----DYDVGEYIASECPWIYRNDYVALSVGRRYLGSVYWALTTLTTVGYGDISARTPAEQI 270          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DP00_PARTE)

HSP 1 Score: 99.8 bits (247), Expect = 5.500e-19
Identity = 69/270 (25.56%), Postives = 121/270 (44.81%), Query Frame = 1
Query:  379 KKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTM--VYENHRLHEGTFLAVRTLLS--------------VVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
            K LF P+ +F +++   +++ L+   F  PIR+AF       W+ ++L   ++F +D+L+  NT + +   G ++  R  I  +Y +   I DL+A FP   I       A    +   L  LP+M+++  +  M    +N + H   F A++ L++              V+V  H+ GC WY++A L                +F                   W+Y  D ++ S    YL S+YWA+ T+ TVG+GD+ A    E++
Sbjct:  205 KHLFLPDSKFKKYWQYVLMILLIYTAFITPIRLAFIEEFNVVWFTLELTVDMLFFLDILITFNTAYFN-EEGVLIVDRQQIAIQYLRTWFIFDLMAVFPTDQI---FQNEAQKLSQYFKLTRLPRMYKLISISRMWSTVQNSQNHNDCFSAIQDLINLNSTTVRVLKFFGTVLVCVHIMGCLWYLVAKL---------------NKF---------------GPNTWVYELDLLSKSEYELYLTSIYWAVATICTVGFGDIHAFNDTERI 440          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ANB6_9CILI)

HSP 1 Score: 97.4 bits (241), Expect = 2.510e-18
Identity = 77/278 (27.70%), Postives = 122/278 (43.88%), Query Frame = 1
Query:  358 NNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPS-ERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIP-GLGPGSADGNH----EIAYLLSLPKMFQVYWLMTMVYENHRL-------------HEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAE 1134
            + S  V K +F P+  F  ++   + ++LL      P  +AF  S E   W+ ID     +F +DVLV LNT + D + GK++ +R  I   Y K  LI+D +A  PF  I   L P      +    ++  L SLP++F++  ++ +  E                 H G  L + TL  ++++ H+  C WY +A          ++E  P+                      W+ R       +   YL S+YWALTTL T+GYGD+  +T  E
Sbjct:   87 SESVSVPKTIFHPSEGFKVFWNLILGISLLYTAIITPFLLAFIVSREFDQWFFIDSILTGIFFLDVLVTLNTAYFD-SEGKLICNRKQIFYNYLKAWLIIDFIACIPFDMIQYSLNPNGKRATYNTLSKLVRLKSLPRLFRLSKVLVLFKETRTFPLLDSIYYFFSLSHSGVRL-ISTLSMILLSLHIISCLWYFMAR---------FYEFSPD---------------------TWVVRMGLHDSEVFTLYLNSLYWALTTLGTIGYGDIVPKTTGE 332          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CCV0_9CILI)

HSP 1 Score: 96.7 bits (239), Expect = 4.750e-18
Identity = 74/284 (26.06%), Postives = 125/284 (44.01%), Query Frame = 1
Query:  322 LSDSEADYDAFDNNSERVGKK-LFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGA-WYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQV---------YWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
            + D +   +  + ++ R+  K +F P+ +F   + T +LV +L     +P  I+F     G  ++ ++    L F  D+ V LNT +V+  NG+++ +RM I + Y K  L  D+++ FPF  +        D ++    LL L ++ ++         Y      +    L++G    +  +  V++  H   C WYM     S   ED                          S   WI RN  +    G++YL S+YWA T LTTVGYGD++A T  E +
Sbjct:  103 IMDDKVMINRVEGSAGRLNNKWIFKPDGKFNAIWNTILLVLILYTFTVLPFLISFEEFTIGTPYFWVEFMVDLFFFFDIFVTLNTAYVN-KNGQLIRTRMKIIKHYVKTTLFFDIISIFPFHLL-------TDTSNTTPRLLKLTRVVRIIKAKKLSGLYSKALDYFSVLNLYQGVTRLILGMFIVLLMTHFIACMWYM-----SARVEDF-------------------------SPKTWIVRNLLLDSENGKKYLSSLYWACTVLTTVGYGDITAMTKPELI 348          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B157_9CILI)

HSP 1 Score: 93.6 bits (231), Expect = 4.460e-17
Identity = 72/268 (26.87%), Postives = 117/268 (43.66%), Query Frame = 1
Query:  385 LFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPS-ERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIP-GLGPGSADGNH----EIAYLLSLPKMFQV------------YWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAE 1134
            +F P+  F  ++   + ++LL      P  +AF  S E   W+ ID     +F +DV++ LNT + DG  GK++ SR  I   Y K  LI+D++A  PF  I   + P      +    ++  L SLP++F++            + L+   Y    L       + T   ++++ H+  C WY +A          ++E  P+                      WI R   +   +   YL S+YWALTTL T GYGD++ +T  E
Sbjct:   49 MFHPSEGFKVYWNLILGLSLLYTAIVTPFLLAFIVSREFDQWFIIDCILTSIFILDVIITLNTAYFDG-EGKLICSRKQIFTNYLKGWLIIDVVACIPFDLIQYSMNPNGQRATYNTLSKLVRLKSLPRLFRLSKVLVLFKQAKSFPLLDNFYYFFSLSHSGAQIISTFSMIILSLHIISCLWYFVAR---------FYEFDPD---------------------TWISRQGMIDSEIFDIYLTSIYWALTTLGTFGYGDITPKTTGE 285          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C4X0_9CILI)

HSP 1 Score: 91.7 bits (226), Expect = 2.010e-16
Identity = 64/264 (24.24%), Postives = 116/264 (43.94%), Query Frame = 1
Query:  394 PNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSER-GAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSV--------------VVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
            P+ R  + +   + +AL+     MP  +AF  +++   W+ I L   ++F  D +++  T F D   G +V +R  I   Y +    +D++A+FPF F+   G  S   +     ++ +P+++++  +  +     + + G F  +R  L++              +V  H+ GC WY +A L                     N  + T          W+Y   Y+  S    YL  +YWA+TT+TTVGYGD+ A    E++
Sbjct:   96 PDARLKKLWNVILALALVYTAAIMPYVMAFIETQQWDVWFFIALIMDILFLGDFILNCTTAFFDN-EGNLVVNRKKIMGNYLRGWFCIDVVASFPFNFLEISGSNSQQMSKSFLRVIKVPRIYRLLRISKLFKVVSQSNYGFFEKIRDYLNIKHSSMKLMTSCIIIIVCIHISGCFWYYIARL---------------------NNFDNTT---------WVYNLKYLNESTDTLYLTCLYWAITTMTTVGYGDIHAFNNTEKI 328          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DMB2_PARTE)

HSP 1 Score: 91.7 bits (226), Expect = 2.090e-16
Identity = 69/281 (24.56%), Postives = 122/281 (43.42%), Query Frame = 1
Query:  355 DNNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFF-PSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQV--------------------YWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAE 1134
            D N E++   +  PN  F + +    LV ++     +P RI+F+  +E G WY  D+   ++F +D+++   +G+ D   GK+V  R  I   Y K    +DLL+  P  ++      S  GN +   +    K+F++                    Y  ++ + E  + + G    +  L+SV +  HL GC W+ +A     + +                               W+ RND  + ++  +Y+ S+Y+A TTLTTVGYGD+ + + AE
Sbjct:   97 DQNEEKLEFPIIHPNSLFKQIWNGIFLVMMIYVATILPFRISFYLDNEVGVWYYADIGTDILFWLDLIISCLSGYYD-EEGKLVKKRKVIFMNYLKGWFTIDLLSCLPLNYVMD-EVISETGNMQSQNI----KLFKLLXXXXXXXXXXXXXXXDMMKYLGISEIMEFFKFNYGFSRLLSLLISVCLVIHLSGCLWFYVAAFNDFDSQT------------------------------WVSRNDLTSSTIQTKYIASIYYAFTTLTTVGYGDIHSFSSAE 341          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B8X9_9CILI)

HSP 1 Score: 90.9 bits (224), Expect = 3.680e-16
Identity = 71/266 (26.69%), Postives = 114/266 (42.86%), Query Frame = 1
Query:  394 PNFRFLRWYATFMLVALLTFVFYMPIRIAFFP-SERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHE----IAYLLSLPKMFQVYWLMTMV--YENHRLHEGT--FLAVR--------TLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
            PN  F +++   +   LL      P+ IAF   S    W+ +D      + +DV+V+ NT F D  +  + Y+R  I   Y K  +I+D+LA  PF+ +P +   ++   +     I  L S+PK+F+    +  +  Y+ H L E    FL +          L  ++V+ H+  C WY+ +T    E E                               W+YR           YL S YWA+TTLT+VGYGD++  +  E +
Sbjct:   88 PNSSFKQYWNILIGFLLLYTATITPLVIAFLDTSSLDLWFMLDTIIDFCYVLDVIVNCNTAFFD-QHAALKYTRKEIVLNYLKGWMIIDILACIPFSTVPKIISATSGKGYNKLVRIFRLRSIPKLFRFSKAIKFIKTYKTHFLLEQVQIFLNINHSVMRLFALLAGIIVSLHVVACFWYLFSTFSDFEYET------------------------------WVYRYSLENAGTFDLYLTSAYWAITTLTSVGYGDITPYSDIELI 322          
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Potassium (channel n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VSV5_COLES)

HSP 1 Score: 90.9 bits (224), Expect = 4.290e-16
Identity = 69/256 (26.95%), Postives = 116/256 (45.31%), Query Frame = 1
Query:  385 LFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVT---AHLFGCGWYMLATLLSTECEDLYFEG-LPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
            +  P  RF + +  F+L+  +   F+ P+   FF         +D+A  + F +D++VH    + D    ++VY    I +RYAK  L++DLL   P+ +I      +  G  E+ YLL + ++ +V  +    +   +     +L  R +  +VV     H   C +Y LAT L +  E   + G L  GE+ + N  E                     + + +RYL S+Y+A+ T+ TVGYGD+ A    E V
Sbjct:   74 IIHPEKRFYQVWTQFILLWAVYSSFFTPLEFGFFRGLPEKLMLLDVAGQIAFLLDIVVHFLLAYRDAQTYRMVYEPTRIAKRYAKSGLVMDLLGCLPWDYIYK----ACGGKEEVRYLLWI-RLSRVRKVTDFFHRLEKDIRVNYLFTRIVKLIVVELYCTHTAACIFYYLATTLPSSMEGYTWIGSLQLGEYSYKNFRE---------------------IDIFKRYLTSLYFAIVTMATVGYGDIHAVNLREMV 303          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cyclic2.150e-19597.16nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic1.760e-17087.96nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic5.500e-1925.56nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic2.510e-1827.70nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic4.750e-1826.06nucleotide-binding domain-containing protein n=2 T... [more]
Cyclic4.460e-1726.87nucleotide-binding domain-containing protein n=2 T... [more]
Cyclic2.010e-1624.24nucleotide-binding domain-containing protein n=1 T... [more]
Cyclic2.090e-1624.56nucleotide-binding domain-containing protein n=2 T... [more]
Cyclic3.680e-1626.69nucleotide-binding domain-containing protein n=1 T... [more]
Potassium4.290e-1626.95channel n=1 Tax=Colocasia esculenta TaxID=4460 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9352contigEcto-sp9_F_contig9352:115..4679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score555.4
Seed ortholog evalue1.4e-155
Seed eggNOG ortholog2880.D8LG26
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionCyclic nucleotide-binding domain
Ec32 orthologEc-21_004870.1
Exons5
Model size1140
Cds size822
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9352.17516.1prot_Ecto-sp9_F_contig9352.17516.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9352 433..4679 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.0522463-UTR-Ecto-sp9_F_contig9352:114..4321622931015.0522463-UTR-Ecto-sp9_F_contig9352:114..432Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9352 115..432 +
1692278993.489495-UTR-Ecto-sp9_F_contig9352:114..4321692278993.489495-UTR-Ecto-sp9_F_contig9352:114..432Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9352 115..432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.0711055-CDS-Ecto-sp9_F_contig9352:432..6111622931015.0711055-CDS-Ecto-sp9_F_contig9352:432..611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 433..611 +
1692278993.5034134-CDS-Ecto-sp9_F_contig9352:432..6111692278993.5034134-CDS-Ecto-sp9_F_contig9352:432..611Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 433..611 +
1622931015.0863156-CDS-Ecto-sp9_F_contig9352:1403..15031622931015.0863156-CDS-Ecto-sp9_F_contig9352:1403..1503Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 1404..1503 +
1692278993.513417-CDS-Ecto-sp9_F_contig9352:1403..15031692278993.513417-CDS-Ecto-sp9_F_contig9352:1403..1503Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 1404..1503 +
1622931015.1076486-CDS-Ecto-sp9_F_contig9352:1818..20731622931015.1076486-CDS-Ecto-sp9_F_contig9352:1818..2073Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 1819..2073 +
1692278993.5230803-CDS-Ecto-sp9_F_contig9352:1818..20731692278993.5230803-CDS-Ecto-sp9_F_contig9352:1818..2073Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 1819..2073 +
1622931015.1209507-CDS-Ecto-sp9_F_contig9352:3568..37351622931015.1209507-CDS-Ecto-sp9_F_contig9352:3568..3735Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 3569..3735 +
1692278993.5330946-CDS-Ecto-sp9_F_contig9352:3568..37351692278993.5330946-CDS-Ecto-sp9_F_contig9352:3568..3735Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 3569..3735 +
1622931015.1336544-CDS-Ecto-sp9_F_contig9352:4558..46791622931015.1336544-CDS-Ecto-sp9_F_contig9352:4558..4679Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 4559..4679 +
1692278993.543368-CDS-Ecto-sp9_F_contig9352:4558..46791692278993.543368-CDS-Ecto-sp9_F_contig9352:4558..4679Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9352 4559..4679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9352.17516.1

>prot_Ecto-sp9_F_contig9352.17516.1 ID=prot_Ecto-sp9_F_contig9352.17516.1|Name=mRNA_Ecto-sp9_F_contig9352.17516.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=274bp
MLSDSEADYDAFDNNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMP
IRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMA
ICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVY
WLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECED
LYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSV
YWALTTLTTVGYGDLSARTPAEQV
back to top

mRNA from alignment at Ecto-sp9_F_contig9352:115..4679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9352.17516.1 ID=mRNA_Ecto-sp9_F_contig9352.17516.1|Name=mRNA_Ecto-sp9_F_contig9352.17516.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4565bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9352:115..4679+ (Ectocarpus species9 EcSCA_722f female)
CTCTATCGCTCGGAGACTTACATGGACTCTCAGAACCCGAACCAATTTGA GTGACTTCAAAGCTCTGGGTGATAATACACTACGAACAAGGTTTGTGTAG GTTAAACACTCAAGTATGCCCAGTATCCAGCCGGTTTTTCTTCCACTCAC GGTGAAGACTTCAACGCATCCCCTTCTACCGTGGTTATGTCGAAGTGGTA GTCTTTTTGTGACTTTTACGTAGATTTTCTGAAAAAGAGTAGTGCTCTGC CTCCCCCCCCCCACACACACATTTAATAACATATATATTTTTCCCAGTTG ACGGAGGCTGACGAAGCCATGCTCTCCGATTCGGAGGCGGACTACGACGC GTTCGACAACAACTCGGAGAGGGTGGGCAAGAAGCTGTTCTCGCCCAACT TTCGCTTCCTGCGGTGGTACGCGACCTTCATGCTCGTCGCGCTGCTCACC TTCGTGTTCTACATGCCCATCAGAATCGCCTTCTTCCCCTCGGAACGGTG AGTGGTGGTGGCAGCACGTTGAATTGCCTTTGGGGAGATTAGTTGTTCTT CTGAAAACAAATGAATCTCTGTCCACAGATTTTTTTCTATAGTCCATGGC AGCTCGTTATGGGTCAACTTTATTTTTTATTCTTATCCCTCACAAGAACC AAACAAATCCCGTCGCTATTCACAGATAAAACTCCAGAGAATTACTGTTT TTTTATTGCTTGGTCGAACAGACGAGGGAGGGCGAGGGTTTTGTGGTCGT GTAGGCATACATTGTTGACAAGAAGACCTACCTTTGTCTCTGCTAAATGT TGCTTTTTTTGTCTTTGCTGGTAGTTAAAACTGTGAACACTGCTGTTGGA AGAGTCGTTCACCTGAAAGAAAAAGCAAGCAAGTTTGTGTGTGCAACAAA ACCCACTTTGCCCCGATGAACCCCGCGCGCGGTGGCAGTCATTTCGCCAT TGTAGCTCCTTTGACAAACAATTCGACGAGCATTCCGGTAGGTTGCGCGC CGTACTGTTTCTAAACGCTGCCGCGGTCATGCTCTCTCGCGATCTCTCTT TCTTCTCAAAACGCGCCACATGCACCTACTGAAATATGACAACCTCTCGC TCTTAAGTCTTAGGCTCGGGTTTTCCCACTGCCATATCATCGATTTTTCG TGCAACATATCCAGGCCTGAGAGCGTTCCCTCCTCGCCGCATTCAGGCTT GTGTTCACAGCTTCCTTCCTTGTTAAACGCGAGTGGCTTCCGGCACCTGC TGATGTGTCGATCGACGTGTGTCTCCTCTTGTGTGGCAGTGGGGCTTGGT ACGGGATTGACCTGGCGTGGCACCTCGTGTTCGCCATCGACGTGCTAGTT CACCTCAACACCGGCTTCGTCGACGGCACCAATGGCAAGGTGTGAGTTTT TCTTTTCTTTTTTCTTGTTTCAGTGACGAACGCTCTTGGTTTTTTATCTG CATCCACGGCTGCTGCGGCGCCTGTTTTTGTGGGATCCTCTTCTCTCCGT TTCACTTTGCTTCTTATTCGGCTATGAATGACTTCAGTTGCTCTGCGGCG TGATTTTCGTGTGTCCATCGCTGCTGCCGCTGCTGCTTGCTGCTACGGCC ACCTCCGCTCCTCCTTCGATCATCATGAACAGCCTGGCTGCACTGCTTAC TCTTGACCTCCCCCCCCCCGTCCTCCTCCTCCCCCTCCCCACGAACTACG AAAGGTGGTTTACTCCAGAATGGCCATCTGCCGGCGCTACGCCAAGCGCG CGCTGATCGTGGACCTGCTTGCGGCGTTCCCGTTTACCTTCATCCCCGGC CTGGGACCGGGCAGCGCAGACGGCAACCACGAGATAGCCTACCTGCTGAG CCTGCCCAAGATGTTCCAGGTGTACTGGCTCATGACCATGGTGTACGAGA ACCACCGCCTCCACGAGGGGACGTTTCTGGCCGTCCGGACTCTTCTGTCC GTGGTCGTGGTGAGTCAGGCGTCTCTTTTTTTTTTATTTCATCGCGATAA ATCAACGCTCACAGCATTTCTGGCCGGTACTGTACCCCCCTTTTGGGGCT TTTGGGGGAGTTGGCTTGTGAGCACTGAAGGCGTCAGGTGGACCAGTACG GACATTAGAAGGTACTGAGCGGAGAGCGGAACGGTTTTTATTATGGAGAC AACAACAACAACTGTAAGGAGCTCCATTTTTTTTGTTTTTCTATCGTTTT GCTTTTTCAGCGCTGACAGCATTTTTGCGGGGTATGTAGGAGCTATTATT GTAGCTCCATGGTCACACAGAAGGGTTCTCCCTACCCGTTCTGCAAAGTA CAATAGCAGGGTAAATATATAGGACTTGGGTGTTTGAGCAAGACGGCGCC TTTTTGTGGCTGGCCCGCGCACTCTTGGTCCATTGTGTGGCACAACAGCT TGAAGTATGTTTGCGTCCTCATGTTGTGCGTTATGGAAGGTTCTGGTTTG GAGCATGAGGGTTATGTCATAAGCTTTGTTAGCTGTCCGCGCCCCTCTGT CTGTGGCAGTGTTGGTGATTCTAGTTTGTCCCCCCGCGGAGCAGCTTCTT GGAAGGCACGTACCTATGCACGGAGACGAAGCGTGTTGTTTGTCAGAGCT TGTTGAACATCGCGAGTCAGGAGGGCGTGTTTCGGGGCTTTCAGCGCTCC TCTCTCCGTCGTCGCGCGATAGTGTTGCTTTCGATATTCCACCGGCGACG GTGTTGGTGGAAACGGTGGCTTGATGGATGAAACCACGCGTGCCTCTCAC ACGATTGAATGAGTATAGCTGATGCTGCAGACAACATATCTACAGTGGGT ATATAACTGGTCTGGTATAGAACAAATAGTCTGGTTTGCATCGTTTCGTG ATGAACTGGTGCTCCATTTATCGCTGGATTGGTCGAGCTGAGCGTTCTCG TTGTGCTGTTGAAGCGTTAGCTTCTTTCCCAATGCTTCTGCTTTGCCCAG GCGGTGCGCTTGCTGGCTGCAGGTAGCTTCCAGCCTAACGTAGAGGTACC ACGATGGTTGTCTTCTTCCTGGTGGTGGTACAGTATTGCTGCTGCGTTGA TGTGTTCATGCCCTTGTTTTTTGCTCAATTACTCTCGTCGCACAACAATG TACCATACCATATGCCTGTGAGCGTAAGGTGAACCAGGCAACTTGAATAC AGCAAACGATGATGGAACCTTTACTTCAGAGAAACTTTTTCTCTTCATCG GGAAAAAGTGTAGTGCAAAAACGCGTGCAAACAGTTGGGATGAAACACGG ATCCCCCCCCCCCCCCCCCCCCCCCCCCCGTTCCTTTCCCTCTTGCATTT GCTGTCCCCCCACCCCGCCCCCCCTCCGGGCGGGGGGGGGGGNNNNNNNN NNGGAGTGCAAAAACGCGTGCAAACAGTTGGGATGAAACACGGGCCCCCC CCCCCCCCCCCATCTCTCCGTGTTATCTTCCCGGTGTACGTATGCATACC TCAGACGGCGCACCTGTTCGGGTGCGGGTGGTACATGCTGGCGACGTTGC TGAGCACGGAGTGCGAGGACCTGTACTTCGAAGGACTTCCGGAAGGGGAG TTTGTCTTCGCGAACGGCCTCGAGTACACTGCCGGTGACTACATCGCCAG CGAGTGCCCCTGGATCTACAGGTGTGCTGTGCGTGTATGTGTTTTTTTAT TTGCATCGACCGGGCTAACCGGCTGACAATGAACAGACGCCATTCGCATA ACGAGACAGAAAACGCGAATACGCTAACGCTCCTGGTCGTGTGTGTGTTT TTTTTATGTGCATCGACCGCACGGGTGTAATGTGTGTGATGTGCACGCGT GTACTTTCATGTTTTTGGTACGAAAACAAGCAAATCCAACCTGTATTCAT GGACAAAAAGTCCAAGATAAATTAGCGATGGATTCCGCATGTACATCACC CATCTGCCTGTCTTCAAGCGTGCAAAAGTTGTGTGGTTGTGCATGTTTTC GTAGCATCGAACTCGTTCACGGATGACCTAGAACAAGAAGCTCGCGACTA GGCAGCCAATCAATCTTCACGAAATGATACGGCGAGGTATCATAGGTTTG AGTTGTGTAGCGATTGTGAGTGATGATGACCGCTGCAGAAGAGAATGGCT GAAAATTCCTTGTAGTCGTAAAACAGATGGACCAGACGTAGAAAGGCTCG TACAATGGTGTCTTGAAATACTACGGCCACTGTCAGCACCGTTGAGAGCT TGTCCAATTAGAAACAGCAGAGAGATGTGCGTGCGCCCACGTGGGCGCAG ATCCAACGCCGTTCTCACCTACGCCGATTGTGCGTTCATTGTTATTGTTC TGTTTCCGCTTGGCGACGAAAACCTAACCTCCTCATTCCGAAAGACACAG CAGACGCAAAGCAGTAGACCGCTGACGCGACGAAACGAAAACGAAACAAA ATAAGACAACCGAACGCCATTTTCTTCCGTCTCTACTACGCCAGGAACGA CTACGTAGCGCTCTCGATGGGCAGGAGGTACCTCGGAAGCGTGTACTGGG CCCTGACTACGCTCACCACCGTCGGCTACGGGGATCTCTCTGCCAGGACC CCGGCTGAGCAGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9352:115..4679+

>mRNA_Ecto-sp9_F_contig9352.17516.1 ID=mRNA_Ecto-sp9_F_contig9352.17516.1|Name=mRNA_Ecto-sp9_F_contig9352.17516.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1644bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9352:115..4679+ (Ectocarpus species9 EcSCA_722f female)
ATGCTCTCCGATTCGGAGGCGGACTACGACGCGTTCGACAACAACTCGGA
GAGGGTGGGCAAGAAGCTGTTCTCGCCCAACTTTCGCTTCCTGCGGTGGT
ACGCGACCTTCATGCTCGTCGCGCTGCTCACCTTCGTGTTCTACATGCCC
ATCAGAATCGCCTTCTTCCCCTCGGAACGATGCTCTCCGATTCGGAGGCG
GACTACGACGCGTTCGACAACAACTCGGAGAGGGTGGGCAAGAAGCTGTT
CTCGCCCAACTTTCGCTTCCTGCGGTGGTACGCGACCTTCATGCTCGTCG
CGCTGCTCACCTTCGTGTTCTACATGCCCATCAGAATCGCCTTCTTCCCC
TCGGAACGTGGGGCTTGGTACGGGATTGACCTGGCGTGGCACCTCGTGTT
CGCCATCGACGTGCTAGTTCACCTCAACACCGGCTTCGTCGACGGCACCA
ATGGCAAGTGGGGCTTGGTACGGGATTGACCTGGCGTGGCACCTCGTGTT
CGCCATCGACGTGCTAGTTCACCTCAACACCGGCTTCGTCGACGGCACCA
ATGGCAAGGTGGTTTACTCCAGAATGGCCATCTGCCGGCGCTACGCCAAG
CGCGCGCTGATCGTGGACCTGCTTGCGGCGTTCCCGTTTACCTTCATCCC
CGGCCTGGGACCGGGCAGCGCAGACGGCAACCACGAGATAGCCTACCTGC
TGAGCCTGCCCAAGATGTTCCAGGTGTACTGGCTCATGACCATGGTGTAC
GAGAACCACCGCCTCCACGAGGGGACGTTTCTGGCCGTCCGGACTCTTCT
GTCCGTGGTCGTGGTGGTTTACTCCAGAATGGCCATCTGCCGGCGCTACG
CCAAGCGCGCGCTGATCGTGGACCTGCTTGCGGCGTTCCCGTTTACCTTC
ATCCCCGGCCTGGGACCGGGCAGCGCAGACGGCAACCACGAGATAGCCTA
CCTGCTGAGCCTGCCCAAGATGTTCCAGGTGTACTGGCTCATGACCATGG
TGTACGAGAACCACCGCCTCCACGAGGGGACGTTTCTGGCCGTCCGGACT
CTTCTGTCCGTGGTCGTGACGGCGCACCTGTTCGGGTGCGGGTGGTACAT
GCTGGCGACGTTGCTGAGCACGGAGTGCGAGGACCTGTACTTCGAAGGAC
TTCCGGAAGGGGAGTTTGTCTTCGCGAACGGCCTCGAGTACACTGCCGGT
GACTACATCGCCAGCGAGTGCCCCTGGATCTACAGACGGCGCACCTGTTC
GGGTGCGGGTGGTACATGCTGGCGACGTTGCTGAGCACGGAGTGCGAGGA
CCTGTACTTCGAAGGACTTCCGGAAGGGGAGTTTGTCTTCGCGAACGGCC
TCGAGTACACTGCCGGTGACTACATCGCCAGCGAGTGCCCCTGGATCTAC
AGGAACGACTACGTAGCGCTCTCGATGGGCAGGAGGTACCTCGGAAGCGT
GTACTGGGCCCTGACTACGCTCACCACCGTCGGCTACGGGGATCTCTCTG
CCAGGACCCCGGCTGAGCAGGTAGAACGACTACGTAGCGCTCTCGATGGG
CAGGAGGTACCTCGGAAGCGTGTACTGGGCCCTGACTACGCTCACCACCG
TCGGCTACGGGGATCTCTCTGCCAGGACCCCGGCTGAGCAGGTA
back to top