mRNA_Ecto-sp9_F_contig9352.17516.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG26_ECTSI) HSP 1 Score: 565 bits (1456), Expect = 2.150e-195 Identity = 274/282 (97.16%), Postives = 277/282 (98.23%), Query Frame = 1
Query: 295 QLTEADEAMLSDSEADYDAFDNNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
+LTEADEAMLSDSEADYDAFDNNSERV KKLFSPNFRFLRWYATFMLVALLTFVFY PIRIAFFPSERGAWYGIDL WHLVFAIDVLVHLNTGFVDGT+GKVVYSRMAICRRYAK ALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTP EQ+
Sbjct: 203 KLTEADEAMLSDSEADYDAFDNNSERVDKKLFSPNFRFLRWYATFMLVALLTFVFYNPIRIAFFPSERGAWYGIDLVWHLVFAIDVLVHLNTGFVDGTDGKVVYSRMAICRRYAKHALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPPEQI 484
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6P9_9PHAE) HSP 1 Score: 500 bits (1288), Expect = 1.760e-170 Identity = 241/274 (87.96%), Postives = 257/274 (93.80%), Query Frame = 1
Query: 319 MLSDSEADYDAFDNNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
MLSDSEADYDAFDN+SERVG KLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAW+GIDLAWH++FAIDVLVHLNTGFVDGT GKVVYSRMAI +RYAK ALIVDLLAA PFTF+PGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEG FLAVRTLL VV+TAHLFGCGWYMLATLL TEC+DLYF+GL E + +F +Y G+YIASECPWIYRNDYVALS+GRRYLGSVYWALTTLTTVGYGD+SARTPAEQ+
Sbjct: 1 MLSDSEADYDAFDNDSERVGTKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWFGIDLAWHVLFAIDVLVHLNTGFVDGTTGKVVYSRMAIGQRYAKGALIVDLLAALPFTFVPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGMFLAVRTLLCVVMTAHLFGCGWYMLATLLRTECDDLYFDGLAEEDLIF----DYDVGEYIASECPWIYRNDYVALSVGRRYLGSVYWALTTLTTVGYGDISARTPAEQI 270
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DP00_PARTE) HSP 1 Score: 99.8 bits (247), Expect = 5.500e-19 Identity = 69/270 (25.56%), Postives = 121/270 (44.81%), Query Frame = 1
Query: 379 KKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTM--VYENHRLHEGTFLAVRTLLS--------------VVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
K LF P+ +F +++ +++ L+ F PIR+AF W+ ++L ++F +D+L+ NT + + G ++ R I +Y + I DL+A FP I A + L LP+M+++ + M +N + H F A++ L++ V+V H+ GC WY++A L +F W+Y D ++ S YL S+YWA+ T+ TVG+GD+ A E++
Sbjct: 205 KHLFLPDSKFKKYWQYVLMILLIYTAFITPIRLAFIEEFNVVWFTLELTVDMLFFLDILITFNTAYFN-EEGVLIVDRQQIAIQYLRTWFIFDLMAVFPTDQI---FQNEAQKLSQYFKLTRLPRMYKLISISRMWSTVQNSQNHNDCFSAIQDLINLNSTTVRVLKFFGTVLVCVHIMGCLWYLVAKL---------------NKF---------------GPNTWVYELDLLSKSEYELYLTSIYWAVATICTVGFGDIHAFNDTERI 440
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ANB6_9CILI) HSP 1 Score: 97.4 bits (241), Expect = 2.510e-18 Identity = 77/278 (27.70%), Postives = 122/278 (43.88%), Query Frame = 1
Query: 358 NNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPS-ERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIP-GLGPGSADGNH----EIAYLLSLPKMFQVYWLMTMVYENHRL-------------HEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAE 1134
+ S V K +F P+ F ++ + ++LL P +AF S E W+ ID +F +DVLV LNT + D + GK++ +R I Y K LI+D +A PF I L P + ++ L SLP++F++ ++ + E H G L + TL ++++ H+ C WY +A ++E P+ W+ R + YL S+YWALTTL T+GYGD+ +T E
Sbjct: 87 SESVSVPKTIFHPSEGFKVFWNLILGISLLYTAIITPFLLAFIVSREFDQWFFIDSILTGIFFLDVLVTLNTAYFD-SEGKLICNRKQIFYNYLKAWLIIDFIACIPFDMIQYSLNPNGKRATYNTLSKLVRLKSLPRLFRLSKVLVLFKETRTFPLLDSIYYFFSLSHSGVRL-ISTLSMILLSLHIISCLWYFMAR---------FYEFSPD---------------------TWVVRMGLHDSEVFTLYLNSLYWALTTLGTIGYGDIVPKTTGE 332
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CCV0_9CILI) HSP 1 Score: 96.7 bits (239), Expect = 4.750e-18 Identity = 74/284 (26.06%), Postives = 125/284 (44.01%), Query Frame = 1
Query: 322 LSDSEADYDAFDNNSERVGKK-LFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGA-WYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQV---------YWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
+ D + + + ++ R+ K +F P+ +F + T +LV +L +P I+F G ++ ++ L F D+ V LNT +V+ NG+++ +RM I + Y K L D+++ FPF + D ++ LL L ++ ++ Y + L++G + + V++ H C WYM S ED S WI RN + G++YL S+YWA T LTTVGYGD++A T E +
Sbjct: 103 IMDDKVMINRVEGSAGRLNNKWIFKPDGKFNAIWNTILLVLILYTFTVLPFLISFEEFTIGTPYFWVEFMVDLFFFFDIFVTLNTAYVN-KNGQLIRTRMKIIKHYVKTTLFFDIISIFPFHLL-------TDTSNTTPRLLKLTRVVRIIKAKKLSGLYSKALDYFSVLNLYQGVTRLILGMFIVLLMTHFIACMWYM-----SARVEDF-------------------------SPKTWIVRNLLLDSENGKKYLSSLYWACTVLTTVGYGDITAMTKPELI 348
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B157_9CILI) HSP 1 Score: 93.6 bits (231), Expect = 4.460e-17 Identity = 72/268 (26.87%), Postives = 117/268 (43.66%), Query Frame = 1
Query: 385 LFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPS-ERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIP-GLGPGSADGNH----EIAYLLSLPKMFQV------------YWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAE 1134
+F P+ F ++ + ++LL P +AF S E W+ ID +F +DV++ LNT + DG GK++ SR I Y K LI+D++A PF I + P + ++ L SLP++F++ + L+ Y L + T ++++ H+ C WY +A ++E P+ WI R + + YL S+YWALTTL T GYGD++ +T E
Sbjct: 49 MFHPSEGFKVYWNLILGLSLLYTAIVTPFLLAFIVSREFDQWFIIDCILTSIFILDVIITLNTAYFDG-EGKLICSRKQIFTNYLKGWLIIDVVACIPFDLIQYSMNPNGQRATYNTLSKLVRLKSLPRLFRLSKVLVLFKQAKSFPLLDNFYYFFSLSHSGAQIISTFSMIILSLHIISCLWYFVAR---------FYEFDPD---------------------TWISRQGMIDSEIFDIYLTSIYWALTTLGTFGYGDITPKTTGE 285
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C4X0_9CILI) HSP 1 Score: 91.7 bits (226), Expect = 2.010e-16 Identity = 64/264 (24.24%), Postives = 116/264 (43.94%), Query Frame = 1
Query: 394 PNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSER-GAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSV--------------VVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
P+ R + + + +AL+ MP +AF +++ W+ I L ++F D +++ T F D G +V +R I Y + +D++A+FPF F+ G S + ++ +P+++++ + + + + G F +R L++ +V H+ GC WY +A L N + T W+Y Y+ S YL +YWA+TT+TTVGYGD+ A E++
Sbjct: 96 PDARLKKLWNVILALALVYTAAIMPYVMAFIETQQWDVWFFIALIMDILFLGDFILNCTTAFFDN-EGNLVVNRKKIMGNYLRGWFCIDVVASFPFNFLEISGSNSQQMSKSFLRVIKVPRIYRLLRISKLFKVVSQSNYGFFEKIRDYLNIKHSSMKLMTSCIIIIVCIHISGCFWYYIARL---------------------NNFDNTT---------WVYNLKYLNESTDTLYLTCLYWAITTMTTVGYGDIHAFNNTEKI 328
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0DMB2_PARTE) HSP 1 Score: 91.7 bits (226), Expect = 2.090e-16 Identity = 69/281 (24.56%), Postives = 122/281 (43.42%), Query Frame = 1
Query: 355 DNNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFF-PSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQV--------------------YWLMTMVYENHRLHEGTFLAVRTLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAE 1134
D N E++ + PN F + + LV ++ +P RI+F+ +E G WY D+ ++F +D+++ +G+ D GK+V R I Y K +DLL+ P ++ S GN + + K+F++ Y ++ + E + + G + L+SV + HL GC W+ +A + + W+ RND + ++ +Y+ S+Y+A TTLTTVGYGD+ + + AE
Sbjct: 97 DQNEEKLEFPIIHPNSLFKQIWNGIFLVMMIYVATILPFRISFYLDNEVGVWYYADIGTDILFWLDLIISCLSGYYD-EEGKLVKKRKVIFMNYLKGWFTIDLLSCLPLNYVMD-EVISETGNMQSQNI----KLFKLLXXXXXXXXXXXXXXXDMMKYLGISEIMEFFKFNYGFSRLLSLLISVCLVIHLSGCLWFYVAAFNDFDSQT------------------------------WVSRNDLTSSTIQTKYIASIYYAFTTLTTVGYGDIHSFSSAE 341
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Cyclic (nucleotide-binding domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B8X9_9CILI) HSP 1 Score: 90.9 bits (224), Expect = 3.680e-16 Identity = 71/266 (26.69%), Postives = 114/266 (42.86%), Query Frame = 1
Query: 394 PNFRFLRWYATFMLVALLTFVFYMPIRIAFFP-SERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHE----IAYLLSLPKMFQVYWLMTMV--YENHRLHEGT--FLAVR--------TLLSVVVTAHLFGCGWYMLATLLSTECEDLYFEGLPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
PN F +++ + LL P+ IAF S W+ +D + +DV+V+ NT F D + + Y+R I Y K +I+D+LA PF+ +P + ++ + I L S+PK+F+ + + Y+ H L E FL + L ++V+ H+ C WY+ +T E E W+YR YL S YWA+TTLT+VGYGD++ + E +
Sbjct: 88 PNSSFKQYWNILIGFLLLYTATITPLVIAFLDTSSLDLWFMLDTIIDFCYVLDVIVNCNTAFFD-QHAALKYTRKEIVLNYLKGWMIIDILACIPFSTVPKIISATSGKGYNKLVRIFRLRSIPKLFRFSKAIKFIKTYKTHFLLEQVQIFLNINHSVMRLFALLAGIIVSLHVVACFWYLFSTFSDFEYET------------------------------WVYRYSLENAGTFDLYLTSAYWAITTLTSVGYGDITPYSDIELI 322
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Match: Potassium (channel n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843VSV5_COLES) HSP 1 Score: 90.9 bits (224), Expect = 4.290e-16 Identity = 69/256 (26.95%), Postives = 116/256 (45.31%), Query Frame = 1
Query: 385 LFSPNFRFLRWYATFMLVALLTFVFYMPIRIAFFPSERGAWYGIDLAWHLVFAIDVLVHLNTGFVDGTNGKVVYSRMAICRRYAKRALIVDLLAAFPFTFIPGLGPGSADGNHEIAYLLSLPKMFQVYWLMTMVYENHRLHEGTFLAVRTLLSVVVT---AHLFGCGWYMLATLLSTECEDLYFEG-LPEGEFVFANGLEYTAGDYIASECPWIYRNDYVALSMGRRYLGSVYWALTTLTTVGYGDLSARTPAEQV 1140
+ P RF + + F+L+ + F+ P+ FF +D+A + F +D++VH + D ++VY I +RYAK L++DLL P+ +I + G E+ YLL + ++ +V + + + +L R + +VV H C +Y LAT L + E + G L GE+ + N E + + +RYL S+Y+A+ T+ TVGYGD+ A E V
Sbjct: 74 IIHPEKRFYQVWTQFILLWAVYSSFFTPLEFGFFRGLPEKLMLLDVAGQIAFLLDIVVHFLLAYRDAQTYRMVYEPTRIAKRYAKSGLVMDLLGCLPWDYIYK----ACGGKEEVRYLLWI-RLSRVRKVTDFFHRLEKDIRVNYLFTRIVKLIVVELYCTHTAACIFYYLATTLPSSMEGYTWIGSLQLGEYSYKNFRE---------------------IDIFKRYLTSLYFAIVTMATVGYGDIHAVNLREMV 303 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9352.17516.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9352.17516.1 >prot_Ecto-sp9_F_contig9352.17516.1 ID=prot_Ecto-sp9_F_contig9352.17516.1|Name=mRNA_Ecto-sp9_F_contig9352.17516.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=274bp MLSDSEADYDAFDNNSERVGKKLFSPNFRFLRWYATFMLVALLTFVFYMPback to top mRNA from alignment at Ecto-sp9_F_contig9352:115..4679+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9352.17516.1 ID=mRNA_Ecto-sp9_F_contig9352.17516.1|Name=mRNA_Ecto-sp9_F_contig9352.17516.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4565bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9352:115..4679+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9352:115..4679+ >mRNA_Ecto-sp9_F_contig9352.17516.1 ID=mRNA_Ecto-sp9_F_contig9352.17516.1|Name=mRNA_Ecto-sp9_F_contig9352.17516.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1644bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9352:115..4679+ (Ectocarpus species9 EcSCA_722f female)back to top |