mRNA_Ecto-sp9_F_contig935.17509.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig935.17509.1
Unique NamemRNA_Ecto-sp9_F_contig935.17509.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Ofd1_CTDD (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G882_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 3.330e-86
Identity = 187/189 (98.94%), Postives = 187/189 (98.94%), Query Frame = 2
Query:    2 EYMVLDAALCFVDDREPYKEAAWRQDEVGGYVTYLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDKENGTADPGEGVXXXXXXXXXKNDAAVYKADEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSEGSFGAPGGVLDTVPEGHSGEE 568
            EYMVLDAALCFVDDREPYKEAAWRQDEVGGYVTYLGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SDKENGTADPGEGVXXXXXXXXXKNDAAVYKADEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSEGSFGAPGGVLDTVPEGHSGEE
Sbjct:  216 EYMVLDAALCFVDDREPYKEAAWRQDEVGGYVTYLGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSDKENGTADPGEGVXXXXXXXXXKNDAAVYKADEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSEGSFGAPGGVLDTVPEGHSGEE 404          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM5_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 2.040e-79
Identity = 143/188 (76.06%), Postives = 144/188 (76.60%), Query Frame = 2
Query:    2 EYMVLDAALCFVDDREPYKEAAWRQDEVGGYVTYLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDKENGTADPGEGVXXXXXXXXXKNDAAVYKADEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSEGSFGAPGGVLDTVPEGHSGE 565
            EYMVLDA LCFVDDREPYKEAAWRQDEVGGYVTYLGG                                  DK+NGTADPGEGV         KNDAAVYKADEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSEGSFGAPGGVLDTVPEGHSGE
Sbjct:  516 EYMVLDATLCFVDDREPYKEAAWRQDEVGGYVTYLGGDDDEEEGEKKDSRI--------------------DKDNGTADPGEGVVAGGGGRGQKNDAAVYKADEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSEGSFGAPGGVLDTVPEGHSGE 683          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Oxoglutarate (and iron-dependent oxygenase degradation C-term-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 8.670e-21
Identity = 88/187 (47.06%), Postives = 99/187 (52.94%), Query Frame = 2
Query:    8 MVLDAALCFVDDREPYKEAAWRQDEVGGYVTYLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDKENGTAD-PGEGVXXXXXXXXXKNDAAVYKADEGGSLIS---------VSAASNAL--------------------------SLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVA 460
            +VLDA LCFVDD+EPYKEAAW QDEVGGY TYLGG            XXXXXXXXXXXXX             G  D  G+ V           DAAVYKADEGGS++S         V AA+NA+                             LRDD  + SF+KYVS+AAPGSRYDV  EY+VA
Sbjct:  549 LVLDAVLCFVDDKEPYKEAAWVQDEVGGYHTYLGGDDGDDGGAEAEGXXXXXXXXXXXXX-------------GAPDYKGDEVGSLLYQAP---DAAVYKADEGGSMLSAXXXXXXXSVCAANNAVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDDAEVLSFIKYVSAAAPGSRYDVAAEYVVA 719          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZAV9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.010e-10
Identity = 52/166 (31.33%), Postives = 74/166 (44.58%), Query Frame = 2
Query:   11 VLDAALCFVDDREPYKEAAWRQDEVGGYVTYLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDKENGTADPGEGVXXXXXXXXXKNDAAVYKADEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSEG 508
            VLDA +CFV D   Y  A W   ++GG+  Y+                                    D E+G  D               ++   Y  D+   L+SVSA++N LSLV RD   +  FVKYVSS+AP SRYD+  EY +    ++DG ED++ ++G
Sbjct:  523 VLDATMCFVRDTTEYDTAMWESGDIGGFECYI-----------EADIDEDEDMDMQDGGDGSSQQQPVDGESGATDAAAASKPSSKGHQAADE---YNEDDDTELLSVSASNNTLSLVYRDPGTMR-FVKYVSSSAPSSRYDICMEYELP-PDDDDGGEDTNDADG 672          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YP49_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 8.270e-8
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  281 KNDAAVYK---ADEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEY 451
            + D AVYK   A++ G+L+++SA SN LSLVLRD+E +  F KYVSS APGSR+DV  EY
Sbjct:  483 EEDPAVYKSAPAEDDGALLTISAGSNVLSLVLRDEE-VMKFTKYVSSLAPGSRWDVAFEY 541          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z8X5_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 2.050e-7
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  287 DAAVYKA---DEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEY 451
            D AVYK+   DE G+L+++SA  N LSLVLRD+E +  F KY+SS APGSR+DV  EY
Sbjct:  485 DPAVYKSAAPDEDGALLTISAGCNVLSLVLRDEE-VMKFTKYISSLAPGSRWDVAFEY 541          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PV40_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 2.050e-7
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  281 KNDAAVYKA-DEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSEG 508
            + D A YKA DE G+L+++SAASN LS+VLRD E +  F+KYVS+ APG R+D+  EY +     ED  +D   +EG
Sbjct:  482 EEDPATYKAADEDGALLTLSAASNTLSIVLRD-EGVMRFIKYVSARAPGCRWDISLEYDL----PEDAEDDDDENEG 553          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7BV15_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 3.830e-7
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  281 KNDAAVYKADEGGS---LISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDGAEDSSSSE 505
            KND AVYKAD+ G    L +  A+ N LSLVLRD   +  FVKYVS AAPG R+D  G + V   G+ +G E    SE
Sbjct:  513 KNDPAVYKADDDGDDGILFTYPASWNTLSLVLRDRGTMR-FVKYVSKAAPGDRWDCTGAFGVLDDGDSEGEESEGESE 589          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: uncharacterized (protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI0019080324)

HSP 1 Score: 58.9 bits (141), Expect = 9.310e-7
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 2
Query:  308 DEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEEDG 481
            D  G+L++V A  N L LVLRD E +  FVKYVS+AAPGSR+D+ GEY V   GE DG
Sbjct:  497 DGEGTLLTVQAQFNRLLLVLRD-EGVLRFVKYVSAAAPGSRWDICGEYSVDTFGEADG 553          
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Match: Oxoglutarate (and iron-dependent oxygenase degradation C-term-domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IRW1_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 2.280e-6
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  281 KNDAAVYKA-DEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLVACTGEED 478
            + D AVY+  D+ G+L++VSA  N L+LVLRD   +  FVKYVS+AAPGSR+DV  EY +    EED
Sbjct:  471 EEDPAVYRQMDDDGALLTVSAGWNVLTLVLRDP-GLLKFVKYVSAAAPGSRWDVAFEYDLPPDEEED 536          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig935.17509.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ofd1_CTDD3.330e-8698.94domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Fe2OG2.040e-7976.06dioxygenase domain-containing protein n=1 Tax=Ecto... [more]
Oxoglutarate8.670e-2147.06and iron-dependent oxygenase degradation C-term-do... [more]
Fe2OG2.010e-1031.33dioxygenase domain-containing protein n=1 Tax=Pseu... [more]
Fe2OG8.270e-858.33dioxygenase domain-containing protein n=1 Tax=Basi... [more]
Fe2OG2.050e-758.62dioxygenase domain-containing protein n=1 Tax=Basi... [more]
Fe2OG2.050e-749.35dioxygenase domain-containing protein n=1 Tax=Umbe... [more]
Fe2OG3.830e-750.00dioxygenase domain-containing protein n=1 Tax=Pied... [more]
uncharacterized9.310e-758.62protein n=1 Tax=Cantharellus anzutake TaxID=175056... [more]
Oxoglutarate2.280e-653.73and iron-dependent oxygenase degradation C-term-do... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig935contigEcto-sp9_F_contig935:977..1580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.2
Seed ortholog evalue3.9e-70
Seed eggNOG ortholog2880.D7G882
Preferred nameOGFOD1
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006417,GO:0006449,GO:0006464,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009889,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0016043,GO:0016491,GO:0016705,GO:0016706,GO:0018126,GO:0018188,GO:0018193,GO:0018208,GO:0019222,GO:0019511,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031326,GO:0031543,GO:0031544,GO:0032268,GO:0032991,GO:0034063,GO:0034248,GO:0034622,GO:0035770,GO:0036211,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043244,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051213,GO:0051246,GO:0055114,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1990904,GO:2000112
EggNOG free text desc.peptidyl-proline di-hydroxylation
EggNOG OGsCOG3751@1,KOG3844@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-12_001090.1
Exons1
Model size604
Cds size597
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.0682487-UTR-Ecto-sp9_F_contig935:976..9831622931014.0682487-UTR-Ecto-sp9_F_contig935:976..983Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig935 977..983 +
1692278993.1426334-UTR-Ecto-sp9_F_contig935:976..9831692278993.1426334-UTR-Ecto-sp9_F_contig935:976..983Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig935 977..983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.0830255-CDS-Ecto-sp9_F_contig935:983..15801622931014.0830255-CDS-Ecto-sp9_F_contig935:983..1580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig935 984..1580 +
1692278993.1537561-CDS-Ecto-sp9_F_contig935:983..15801692278993.1537561-CDS-Ecto-sp9_F_contig935:983..1580Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig935 984..1580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig935.17509.1prot_Ecto-sp9_F_contig935.17509.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig935 984..1580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig935.17509.1

>prot_Ecto-sp9_F_contig935.17509.1 ID=prot_Ecto-sp9_F_contig935.17509.1|Name=mRNA_Ecto-sp9_F_contig935.17509.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=199bp
MVLDAALCFVDDREPYKEAAWRQDEVGGYVTYLGGDDDEEEEEKEGSRSG
STDGGAVPPEQEGGGGSRSDKENGTADPGEGVVAGGGGGAQKNDAAVYKA
DEGGSLISVSAASNALSLVLRDDEAITSFVKYVSSAAPGSRYDVVGEYLV
ACTGEEDGAEDSSSSEGSFGAPGGVLDTVPEGHSGEEEEEEEEEDMEEE
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mRNA from alignment at Ecto-sp9_F_contig935:977..1580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig935.17509.1 ID=mRNA_Ecto-sp9_F_contig935.17509.1|Name=mRNA_Ecto-sp9_F_contig935.17509.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=604bp|location=Sequence derived from alignment at Ecto-sp9_F_contig935:977..1580+ (Ectocarpus species9 EcSCA_722f female)
GGAGTACATGGTGCTGGACGCGGCGCTGTGTTTCGTGGACGATCGGGAGC CGTACAAGGAGGCGGCGTGGAGGCAGGACGAGGTCGGGGGCTACGTTACC TACCTTGGCGGAGACGACGACGAGGAAGAGGAAGAAAAGGAAGGCAGCCG TTCCGGCAGCACAGACGGCGGCGCTGTGCCGCCAGAGCAAGAAGGCGGTG GCGGCAGTCGAAGCGATAAGGAAAACGGCACGGCAGATCCGGGCGAAGGT GTCGTCGCCGGAGGTGGGGGGGGCGCGCAAAAGAACGACGCCGCGGTGTA CAAGGCGGACGAGGGCGGCTCCCTGATATCGGTGTCCGCGGCGTCGAACG CCCTGAGCCTGGTGCTGAGAGACGACGAGGCGATCACGAGCTTCGTCAAG TACGTGAGTTCCGCCGCCCCCGGCAGCCGTTACGACGTCGTGGGCGAGTA TCTCGTCGCGTGCACCGGCGAAGAAGACGGCGCCGAAGACAGTAGTAGCA GCGAGGGTAGTTTTGGCGCCCCGGGGGGAGTGCTGGATACGGTGCCGGAA GGGCACAGCGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATATGGAAGA GGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig935:977..1580+

>mRNA_Ecto-sp9_F_contig935.17509.1 ID=mRNA_Ecto-sp9_F_contig935.17509.1|Name=mRNA_Ecto-sp9_F_contig935.17509.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1194bp|location=Sequence derived from alignment at Ecto-sp9_F_contig935:977..1580+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTGGACGCGGCGCTGTGTTTCGTGGACGATCGGGAGCCGTACAA
GGAGGCGGCGTGGAGGCAGGACGAGGTCGGGGGCTACGTTACCTACCTTG
GCGGAGACGACGACGAGGAAGAGGAAGAAAAGGAAGGCAGCCGTTCCGGC
AGCACAGACGGCGGCGCTGTGCCGCCAGAGCAAGAAGGCGGTGGCGGCAG
TCGAAGCGATAAGGAAAACGGCACGGCAGATCCGGGCGAAGGTGTCGTCG
CCGGAGGTGGGGGGGGCGCGCAAAAGAACGACGCCGCGGTGTACAAGGCG
GACGAGGGCGGCTCCCTGATATCGGTGTCCGCGGCGTCGAACGCCCTGAG
CCTGGTGCTGAGAGACGACGAGGCGATCACGAGCTTCGTCAAGTACGTGA
GTTCCGCCGCCCCCGGCAGCCGTTACGACGTCGTGGGCGAGTATCTCGTC
GCGTGCACCGGCGAAGAAGACGGCGCCGAAGACAGTAGTAGCAGCGAGGG
TAGTTTTGGCGCCCCGGGGGGAGTGCTGGATACGGTGCCGGAAGGGCACA
GCGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATATGGAAGAGGAGATG
GTGCTGGACGCGGCGCTGTGTTTCGTGGACGATCGGGAGCCGTACAAGGA
GGCGGCGTGGAGGCAGGACGAGGTCGGGGGCTACGTTACCTACCTTGGCG
GAGACGACGACGAGGAAGAGGAAGAAAAGGAAGGCAGCCGTTCCGGCAGC
ACAGACGGCGGCGCTGTGCCGCCAGAGCAAGAAGGCGGTGGCGGCAGTCG
AAGCGATAAGGAAAACGGCACGGCAGATCCGGGCGAAGGTGTCGTCGCCG
GAGGTGGGGGGGGCGCGCAAAAGAACGACGCCGCGGTGTACAAGGCGGAC
GAGGGCGGCTCCCTGATATCGGTGTCCGCGGCGTCGAACGCCCTGAGCCT
GGTGCTGAGAGACGACGAGGCGATCACGAGCTTCGTCAAGTACGTGAGTT
CCGCCGCCCCCGGCAGCCGTTACGACGTCGTGGGCGAGTATCTCGTCGCG
TGCACCGGCGAAGAAGACGGCGCCGAAGACAGTAGTAGCAGCGAGGGTAG
TTTTGGCGCCCCGGGGGGAGTGCTGGATACGGTGCCGGAAGGGCACAGCG
GAGAGGAGGAGGAGGAGGAGGAGGAGGAGGATATGGAAGAGGAG
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