mRNA_Ecto-sp9_F_contig9346.17506.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9346.17506.1
Unique NamemRNA_Ecto-sp9_F_contig9346.17506.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9346.17506.1 vs.
Match: GT47 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T2_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 2.400e-100
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 1 
Query:    4 QCSLADSYKLRINEHTNLDKQHQGSYWREAVWRAGLLANTYEEACLFIHVNTHTHDEPCATRAPLWNGGVNHIMMEFTPWWIKSQRARPHISNTYAMDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 429
            +CSLADS KLRIN+HTNLDKQHQGSYWREAVWRAGLLANTYEEACLFIHVNTH HDEPCATRAPLWNGGVNHIMMEFTPWWIK QRARPHISNTYAMDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK
Sbjct:  210 ECSLADSNKLRINDHTNLDKQHQGSYWREAVWRAGLLANTYEEACLFIHVNTHNHDEPCATRAPLWNGGVNHIMMEFTPWWIKGQRARPHISNTYAMDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 351
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BLAST of mRNA_Ecto-sp9_F_contig9346.17506.1 vs.
Match: GT47 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRU9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 9.190e-26
Identity = 61/141 (43.26%), Postives = 82/141 (58.16%), Query Frame = 1 
Query:    7 CSLADSYKLRINEHTNLDKQHQGSYWREAVWRAGLLANTYEEACLFIHVNTHTHDEPCATRAPLWNGGVNHIMMEFTPWWIKSQRARPHISNTYAMDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 429
            CSLADS  L  +  + L   H    WREA   AG+L+ TY +ACLF+HVN   +  PC    PLWNGG NH+M++ T    +++  +P I+ + AMD S +  SC+YRSGYD ++PL     F +        RDYFLT K
Sbjct:  226 CSLADSSALPPSNES-LMLSHT---WREAARDAGVLSETYRDACLFLHVNKRLNHVPCPAEKPLWNGGKNHVMVDLTD---RTRDKKPLIAGSAAMDASSNMRSCFYRSGYDFAVPLRHQWGFGNLTELAPWHRDYFLTVK 359
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BLAST of mRNA_Ecto-sp9_F_contig9346.17506.1 vs.
Match: GT47 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ8_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.050e-25
Identity = 54/148 (36.49%), Postives = 88/148 (59.46%), Query Frame = 1 
Query:    4 QCSLADSYKLRINEHTN------LDKQHQGSYWREAVWRAGLLANTYEEACLFIHVNTHTHDEPCATRAPLWNGGVNHIMMEFTPWWIKSQRARPHISNTYAMDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 429
            +CSL ++ +LR+ +         +D  +     R    + G+LA TYE AC+ +HV+  +  +PCA   P WNGG NH++++ +    K + +RP ++ +YAM+ + +  +C+YRSGYD+S+PL P  VF D A     DR++FLT K
Sbjct:  108 ECSLLETSELRVPDEEQKVSWAWMDHHYVEWVLRNEAEQMGMLAETYESACILVHVSPGS-TKPCAVDQPRWNGGANHLLVDMSD---KGRDSRPDVAGSYAMEAATNMHTCFYRSGYDISVPLAPKHVFNDLADVDPWDRNFFLTTK 251
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BLAST of mRNA_Ecto-sp9_F_contig9346.17506.1 vs.
Match: Glycosyltransferase, (family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY4_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.200e-24
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  292 MDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 429
            MDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK
Sbjct:    1 MDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 46
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BLAST of mRNA_Ecto-sp9_F_contig9346.17506.1 vs.
Match: GT47 (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.850e-23
Identity = 53/148 (35.81%), Postives = 83/148 (56.08%), Query Frame = 1 
Query:    4 QCSLADSYKLRINEH------TNLDKQHQGSYWREAVWRAGLLANTYEEACLFIHVNTHTHDEPCATRAPLWNGGVNHIMMEFTPWWIKSQRARPHISNTYAMDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 429
            +CSL DS +L   +       T +  Q      R    + G+LA+TY  AC+F+HV       PCA   P WN G NH++++ +    K + +RP ++ ++AM+ + +  +C+YRSGYD+S+PL P +V  D A     DR++FLT K
Sbjct:  105 ECSLQDSSELLAADQGYEFSRTRVGDQDAAVTLRNETAQLGMLADTYASACMFVHVGKGLK-RPCAVNQPRWNNGANHLLVDMSD---KGRASRPDVAGSFAMEAATNMHTCFYRSGYDISVPLAPRQVLHDLANVAPLDREFFLTTK 248
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BLAST of mRNA_Ecto-sp9_F_contig9346.17506.1 vs.
Match: Glycosyltransferase, (family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H1_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.000e-22
Identity = 52/148 (35.14%), Postives = 87/148 (58.78%), Query Frame = 1 
Query:    4 QCSLADSYKLRINEH----TNLDKQHQGSYW--REAVWRAGLLANTYEEACLFIHVNTHTHDEPCATRAPLWNGGVNHIMMEFTPWWIKSQRARPHISNTYAMDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 429
            +CSL ++ KLR  +     ++    H    W  R    + G+LA TYE AC+ +HV+  +  +PCA   P W+GG NH++++ +      + +RP ++ +YAM+ + +  +C+YRSG+D+S+PL   K F + A   A DR++FLT K
Sbjct:   12 ECSLLETSKLRAQDEGKKVSSTRMHHHYVEWVLRNEAEQMGMLAETYESACILVHVSPGS-TKPCAVDQPRWSGGANHLLVDMSD---NGRGSRPIVAGSYAMEAASNMQTCFYRSGFDISVPLHSKKAFNNLADVAAWDRNFFLTTK 155
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9346.17506.1 vs.
Match: Glycosyltransferase, (family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H7_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 4.650e-7
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:  250 KSQRARPHISNTYAMDWSFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFK 429
            K + +RP ++ ++AM+ + +  +C+YRSGYD+S+PL P +V  D A     DR++FLT K
Sbjct:    4 KGRASRPDVAGSFAMEAATNMHTCFYRSGYDISVPLAPRQVLHDLANVSPLDREFFLTTK 63
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9346.17506.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
GT472.400e-10096.48protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
GT479.190e-2643.26protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
GT473.050e-2536.49protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Glycosyltransferase,1.200e-24100.00family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
GT472.850e-2335.81protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Glycosyltransferase,1.000e-2235.14family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Glycosyltransferase,4.650e-741.67family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9346contigEcto-sp9_F_contig9346:3702..5038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D7FYQ6
Preferred nameEXTL1
KEGG koko:K02366,ko:K02368,ko:K21988
KEGG TC1.A.17.4
KEGG ReactionR05935,R05936,R10138,R10139
KEGG Pathwayko00534,ko01100,map00534,map01100
KEGG ModuleM00059
GOsGO:0000003,GO:0000139,GO:0000271,GO:0000902,GO:0000904,GO:0001501,GO:0001503,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006040,GO:0006044,GO:0006082,GO:0006790,GO:0006807,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007369,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007492,GO:0007498,GO:0008150,GO:0008152,GO:0008194,GO:0008354,GO:0008375,GO:0008589,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010646,GO:0010647,GO:0012505,GO:0015012,GO:0015014,GO:0015020,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016192,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019899,GO:0019953,GO:0021537,GO:0021772,GO:0021988,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030111,GO:0030154,GO:0030166,GO:0030176,GO:0030177,GO:0030182,GO:0030201,GO:0030202,GO:0030203,GO:0030210,GO:0030900,GO:0030968,GO:0031090,GO:0031175,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033554,GO:0033692,GO:0034620,GO:0034637,GO:0034645,GO:0034976,GO:0035295,GO:0035966,GO:0035967,GO:0036465,GO:0036498,GO:0040011,GO:0042175,GO:0042221,GO:0042328,GO:0042330,GO:0042802,GO:0042803,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045880,GO:0046982,GO:0046983,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048513,GO:0048518,GO:0048522,GO:0048565,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048706,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050508,GO:0050509,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055123,GO:0060322,GO:0060465,GO:0060828,GO:0061564,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071840,GO:0072498,GO:0090092,GO:0090097,GO:0090098,GO:0090100,GO:0090263,GO:0097485,GO:0098588,GO:0098657,GO:0098791,GO:0098827,GO:0099003,GO:0099504,GO:0120036,GO:0120039,GO:1901071,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
EC2.4.1.224,2.4.1.225
COG Functional cat.S
CAZyGT47,GT64
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyltransferase, family GT47
Ec32 orthologEc-07_002110.1
Exons2
Model size438
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931013.7261906-CDS-Ecto-sp9_F_contig9346:3701..39491622931013.7261906-CDS-Ecto-sp9_F_contig9346:3701..3949Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9346 3702..3949 +
1692278993.0404575-CDS-Ecto-sp9_F_contig9346:3701..39491692278993.0404575-CDS-Ecto-sp9_F_contig9346:3701..3949Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9346 3702..3949 +
1622931013.7390668-CDS-Ecto-sp9_F_contig9346:4848..50381622931013.7390668-CDS-Ecto-sp9_F_contig9346:4848..5038Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9346 4849..5038 +
1692278993.0556467-CDS-Ecto-sp9_F_contig9346:4848..50381692278993.0556467-CDS-Ecto-sp9_F_contig9346:4848..5038Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9346 4849..5038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9346.17506.1prot_Ecto-sp9_F_contig9346.17506.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9346 3702..5038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9346.17506.1

>prot_Ecto-sp9_F_contig9346.17506.1 ID=prot_Ecto-sp9_F_contig9346.17506.1|Name=mRNA_Ecto-sp9_F_contig9346.17506.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=146bp
MQCSLADSYKLRINEHTNLDKQHQGSYWREAVWRAGLLANTYEEACLFIH
VNTHTHDEPCATRAPLWNGGVNHIMMEFTPWWIKSQRARPHISNTYAMDW
SFDALSCYYRSGYDLSLPLVPGKVFPDTAPSPAPDRDYFLTFKVG*
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mRNA from alignment at Ecto-sp9_F_contig9346:3702..5038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9346.17506.1 ID=mRNA_Ecto-sp9_F_contig9346.17506.1|Name=mRNA_Ecto-sp9_F_contig9346.17506.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1337bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9346:3702..5038+ (Ectocarpus species9 EcSCA_722f female)
ATGCAGTGTTCTCTCGCCGATAGTTACAAGCTGCGCATCAATGAACACAC
CAACCTGGACAAGCAGCACCAGGGGTCCTACTGGAGGGAGGCGGTGTGGA
GGGCGGGGCTGCTGGCCAACACCTATGAAGAGGCGTGCCTTTTCATCCAC
GTCAACACCCACACCCACGACGAGCCGTGCGCCACGAGAGCACCACTCTG
GAACGGGGGCGTCAACCACATCATGATGGAGTTCACACCGTGGTGGATGT
AAGTGCTATGAGTCGATACTTGTGGGAGTTGATTTCTCTTTTTTTTTTCC
TTCATCATGATGGAGTCCACGCCTTGCTGAACGTGAGTGCCACAGAGTGC
TGCTTGGGAGTGCCTTTTGTTTGTCCCGTCGTCATGGTGGAAGTTCACGT
GCAGGATTTCCAAGTACTCCGCACGAGGTGCTTATTTCGTACTTTGAGCA
TTCCCTGTTTTTCATCATGGTGGACTTCAATTGAAGTCTGGGAGGACGTA
AAGTGCTAGTTGTAAATACTTGTGGAGAGTTCCTTTTTCCTTTCATCGTG
ATGCATTGACGCCTTGGAGTACGGCAGTCGTCACCTCTTGAAGCACCTCT
TGAAGGTCACAAAGCTAAGACACTCTTTTTCTTTTTTGGACACATATTTC
AAAATTTGGTGCCCCGCAGAATGAAACACCAATGGGGGGGAGGTGTACTT
ACAGCTGTGTATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACAA
AGCCGGGACGGAGTACGCCGGGACGGAGTACGCCGGGTTCTCAACGGACC
AGGCTAGCACATCACCAAGCGCGAATTGGGTGGGGTGTAAATTTCAGGAC
CCTTTTTTATGTTTTTGTTAACGCGAGTGTCCTTGTTGCGAGGACGACTG
CTGCATAGTTTTTCTCCTGTGCGCATTCTCCTTGTGATGATGTTTTATTG
AGGTTGCGATATGTAAAGCCCTGCCCGCTCGATTGTACTGTGACTGTAGG
GCGCAGGCAACCCCGGCAACAACGGAGGGAAGGTTAATATTTCGACCTGA
TCCTCTCCTGTTTTTCGTTTTTTTTTGTTTTCTTTTGGCGGTCGGTCTGT
GGTGGTGATGCTGGTCGTGTCGTGCCCTCCACACGACGGCGGAGCAGCAA
GTCACAACGCGCCCGCCCGCACATCAGCAACACCTACGCCATGGACTGGT
CGTTCGACGCCCTGAGCTGCTACTACCGCAGCGGCTATGACCTGTCGCTC
CCGCTGGTGCCCGGAAAGGTGTTCCCGGACACGGCTCCGTCCCCTGCCCC
CGATCGAGACTACTTCCTTACTTTCAAGGTAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9346:3702..5038+

>mRNA_Ecto-sp9_F_contig9346.17506.1 ID=mRNA_Ecto-sp9_F_contig9346.17506.1|Name=mRNA_Ecto-sp9_F_contig9346.17506.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9346:3702..5038+ (Ectocarpus species9 EcSCA_722f female)
ATGCAGTGTTCTCTCGCCGATAGTTACAAGCTGCGCATCAATGAACACAC
CAACCTGGACAAGCAGCACCAGGGGTCCTACTGGAGGGAGGCGGTGTGGA
GGGCGGGGCTGCTGGCCAACACCTATGAAGAGGCGTGCCTTTTCATCCAC
GTCAACACCCACACCCACGACGAGCCGTGCGCCACGAGAGCACCACTCTG
GAACGGGGGCGTCAACCACATCATGATGGAGTTCACACCGTGGTGGATAT
GCAGTGTTCTCTCGCCGATAGTTACAAGCTGCGCATCAATGAACACACCA
ACCTGGACAAGCAGCACCAGGGGTCCTACTGGAGGGAGGCGGTGTGGAGG
GCGGGGCTGCTGGCCAACACCTATGAAGAGGCGTGCCTTTTCATCCACGT
CAACACCCACACCCACGACGAGCCGTGCGCCACGAGAGCACCACTCTGGA
ACGGGGGCGTCAACCACATCATGATGGAGTTCACACCGTGGTGGATCAAG
TCACAACGCGCCCGCCCGCACATCAGCAACACCTACGCCATGGACTGGTC
GTTCGACGCCCTGAGCTGCTACTACCGCAGCGGCTATGACCTGTCGCTCC
CGCTGGTGCCCGGAAAGGTGTTCCCGGACACGGCTCCGTCCCCTGCCCCC
GATCGAGACTACTTCCTTACTTTCAAGGTAGGGTGACAAGTCACAACGCG
CCCGCCCGCACATCAGCAACACCTACGCCATGGACTGGTCGTTCGACGCC
CTGAGCTGCTACTACCGCAGCGGCTATGACCTGTCGCTCCCGCTGGTGCC
CGGAAAGGTGTTCCCGGACACGGCTCCGTCCCCTGCCCCCGATCGAGACT
ACTTCCTTACTTTCAAGGTAGGGTGA
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