mRNA_Ecto-sp9_F_contig9341.17501.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI) HSP 1 Score: 344 bits (883), Expect = 1.310e-109 Identity = 206/219 (94.06%), Postives = 207/219 (94.52%), Query Frame = 1
Query: 1 MHRAGEPEEWGTATCGTGSGGAGSAARGPSVFRGWRSSSKAASMSSSXXXXXXXDPGAGDASSPSPFSRGRPFRGSFLPSSATGASPSSTGLGAAVGGDAVSSSAXXXXXXXXXXXXXXXXXXXAPWLARGLKALVRGGRGGETGTQLPSLGAVMEAVDARGAQDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
MH+AGEPEEWGTATCGTGSGGAGSAARGPSVFRGWRSSSKAASMSSS DPGA DASSPSPFSRGRPFRGSFLPSSATGASPSSTGLGAAVGGDA SSSA XXXXXXXXXXXXXXXX APWLARGLKALVRGGRGGETGTQLPSLGAVMEAVDARGAQDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV
Sbjct: 1 MHQAGEPEEWGTATCGTGSGGAGSAARGPSVFRGWRSSSKAASMSSSTAGAGGGDPGAEDASSPSPFSRGRPFRGSFLPSSATGASPSSTGLGAAVGGDAASSSAETXXXXXXXXXXXXXXXXGAPWLARGLKALVRGGRGGETGTQLPSLGAVMEAVDARGAQDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 219
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE) HSP 1 Score: 311 bits (798), Expect = 4.580e-95 Identity = 196/209 (93.78%), Postives = 197/209 (94.26%), Query Frame = 1
Query: 31 GTATCGTGSGGAGSAARGPSVFRGWRSSSKAASMSSSXXXXXXXDPGAGDASSPSPFSRGRPFRGSFLPSSATGASPSSTGLGAAVGGDAVSSSAXXXXXXXXXXXXXXXXXXXAPWLARGLKALVRGGRGGETGTQLPSLGAVMEAVDARGAQDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
GTATCGTGSGG GSAARGPSVFRGWRSS KAASMSSS DPGAGDASSPS FSRGRPFRGSFLPSSATGA+PSSTGLGAAVGGDA SSS XXXXXXXXXXXXXXXXXXXAPWLARGLKALVRGGRGGETGTQLPSLGAVMEAVDARGAQDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV
Sbjct: 106 GTATCGTGSGGVGSAARGPSVFRGWRSS-KAASMSSSTAGAGGGDPGAGDASSPSLFSRGRPFRGSFLPSSATGATPSSTGLGAAVGGDAASSSXXXXXXXXXXXXXXXXXXXXAPWLARGLKALVRGGRGGETGTQLPSLGAVMEAVDARGAQDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 313
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Stromal (processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 8.290e-10 Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1
Query: 535 VMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
V+ + LP+HP MR G+LPNGLRYIIL N SPPERFEAHLEV
Sbjct: 12 VLRAALPSHPLMRSGVLPNGLRYIILPNASPPERFEAHLEV 52
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Uncharacterized (protein n=7 Tax=Phaseoleae TaxID=163735 RepID=V7CFZ1_PHAVU) HSP 1 Score: 67.8 bits (164), Expect = 1.550e-9 Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 490 QDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
QD V +++G +SSELP+HP++ G L NGLRY+IL N+ PP+RFEAHLEV
Sbjct: 157 QDSSVYDNELERIEGFLSSELPSHPKLHRGQLKNGLRYLILPNKVPPKRFEAHLEV 212
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Putative (zinc protease PqqL n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1UWN4_9ROSI) HSP 1 Score: 67.8 bits (164), Expect = 1.550e-9 Identity = 28/47 (59.57%), Postives = 39/47 (82.98%), Query Frame = 1
Query: 517 RSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
R++++G +SSELP+HP++ G L NGLRY+IL N+ PP RFEAH+EV
Sbjct: 181 RTELEGFLSSELPSHPKLHRGQLKNGLRYLILPNKVPPNRFEAHMEV 227
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5APK5_VITVI) HSP 1 Score: 67.4 bits (163), Expect = 2.080e-9 Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 514 GRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
GR++++G + SELP+HP++ G L NGLRY+IL N+ PP RFEAH+EV
Sbjct: 323 GRAELEGFLCSELPSHPKLYRGQLKNGLRYLILPNKVPPNRFEAHMEV 370
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Uncharacterized (protein n=4 Tax=Vitis TaxID=3603 RepID=D7UDI7_VITVI) HSP 1 Score: 67.4 bits (163), Expect = 2.100e-9 Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1
Query: 514 GRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
GR++++G + SELP+HP++ G L NGLRY+IL N+ PP RFEAH+EV
Sbjct: 188 GRAELEGFLCSELPSHPKLYRGQLKNGLRYLILPNKVPPNRFEAHMEV 235
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Uncharacterized (protein n=6 Tax=Prunus TaxID=3754 RepID=A0A6J5Y060_PRUAR) HSP 1 Score: 67.4 bits (163), Expect = 2.120e-9 Identity = 27/48 (56.25%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 514 GRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
G+++++G +SSE+P+HP++ G L NGLRY+IL N+ PP RFEAH+EV
Sbjct: 181 GKTELEGFLSSEIPSHPKLYRGQLKNGLRYLILPNKVPPNRFEAHMEV 228
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: stromal (processing peptidase, chloroplastic-like n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GV35_ANACO) HSP 1 Score: 66.2 bits (160), Expect = 2.600e-9 Identity = 28/46 (60.87%), Postives = 37/46 (80.43%), Query Frame = 1
Query: 520 SKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
+++ G +SS LPTHP++ G L NGLRYIIL N++PP RFEAH+EV
Sbjct: 185 TELDGFLSSPLPTHPKLHRGQLKNGLRYIILPNKTPPNRFEAHMEV 230
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Match: Uncharacterized (protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498IFC1_MALDO) HSP 1 Score: 67.0 bits (162), Expect = 2.830e-9 Identity = 27/47 (57.45%), Postives = 39/47 (82.98%), Query Frame = 1
Query: 517 RSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEV 657
++K++G +SSE+P+HP++ G L NGLRY+IL N+ PP RFEAH+EV
Sbjct: 127 KTKLEGFLSSEIPSHPKLYRGQLKNGLRYVILPNKVPPNRFEAHMEV 173 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9341.17501.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9341.17501.1 >prot_Ecto-sp9_F_contig9341.17501.1 ID=prot_Ecto-sp9_F_contig9341.17501.1|Name=mRNA_Ecto-sp9_F_contig9341.17501.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=219bp MHRAGEPEEWGTATCGTGSGGAGSAARGPSVFRGWRSSSKAASMSSSTAGback to top mRNA from alignment at Ecto-sp9_F_contig9341:3230..5086+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9341.17501.1 ID=mRNA_Ecto-sp9_F_contig9341.17501.1|Name=mRNA_Ecto-sp9_F_contig9341.17501.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1857bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9341:3230..5086+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9341:3230..5086+ >mRNA_Ecto-sp9_F_contig9341.17501.1 ID=mRNA_Ecto-sp9_F_contig9341.17501.1|Name=mRNA_Ecto-sp9_F_contig9341.17501.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1314bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9341:3230..5086+ (Ectocarpus species9 EcSCA_722f female)back to top |