mRNA_Ecto-sp9_F_contig934.17498.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig934.17498.1
Unique Name	mRNA_Ecto-sp9_F_contig934.17498.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.500e-46
Identity = 84/97 (86.60%), Postives = 87/97 (89.69%), Query Frame = 2

Query:    5 LMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVG 295
            LMDTDLLVVCYDR ELVPVIKGQEQLARTEQVG C R F PSST+S+PSSQFQPWLRANS  ARDGIAA+LAMNVLADEKW GDQKPTGT AF GVG
Sbjct:  686 LMDTDLLVVCYDRGELVPVIKGQEQLARTEQVGGCTRDFDPSSTESVPSSQFQPWLRANSNEARDGIAANLAMNVLADEKWDGDQKPTGTAAFDGVG 782

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BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD3_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 9.220e-45
Identity = 82/97 (84.54%), Postives = 86/97 (88.66%), Query Frame = 2

Query:    8 MDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVGG 298
            M+TDLLVVC DRAELV VIKGQE LARTEQVGVC R   PSST+SIPSSQ QPWLRANSK ARDGIAA+LAMNVLAD+ W GDQKPTGTVAFYGVGG
Sbjct:    1 MNTDLLVVCCDRAELVTVIKGQEPLARTEQVGVCTRDVDPSSTESIPSSQLQPWLRANSKEARDGIAANLAMNVLADKNWDGDQKPTGTVAFYGVGG 97

[Close]

BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.640e-41
Identity = 70/98 (71.43%), Postives = 77/98 (78.57%), Query Frame = 2

Query:    2 WLMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVG 295
            WL  T+LL+VCYDR ELVPVIKGQEQL RTE+ G C+R   P STD +PS Q+ PWLRA+ KAARDGIAA LAM VLADE W GD KP G VAFYGVG
Sbjct:  107 WLQSTELLLVCYDRQELVPVIKGQEQLGRTEKFGECSRTSDPKSTDLVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGDTKPNGIVAFYGVG 204

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BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 1.830e-40
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 2

Query:    2 WLMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVGG 298
            WL  T+LL+VCYDR ELVPVIKGQEQL RTE++G C+R F P STD +PS Q+ PWLRA+ KAARDGIAA+LAM VLADE W GD KP G VAFYGVGG
Sbjct:  313 WLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGG 411

[Close]

BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.420e-40
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 2

Query:    2 WLMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVGG 298
            WL  T+LL+VCYDR ELVPVIKGQEQL RTE++G C+R F P STD +PS Q+ PWLRA+ KAARDGIAA+LAM VLADE W GD KP G VAFYGVGG
Sbjct:  259 WLQPTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGG 357

[Close]

BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.460e-40
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 2

Query:    2 WLMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVGG 298
            WL  T+LL+VCYDR ELVPVIKGQEQL RTE++G C+R F P STD +PS Q+ PWLRA+ KAARDGIAA+LAM VLADE W GD KP G VAFYGVGG
Sbjct:  402 WLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGG 500

[Close]

BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 5.560e-40
Identity = 72/99 (72.73%), Postives = 81/99 (81.82%), Query Frame = 2

Query:    2 WLMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVGG 298
            WL  T+LL+VCYDR ELVPVIKGQEQL RTE++G C+R F P STD +PS Q+ PWLRA+ KAARDGIAA+LAM VLADE W GD KP G VAFYGVGG
Sbjct: 1421 WLQSTELLMVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKPNGIVAFYGVGG 1519

[Close]

BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ6_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 8.390e-39
Identity = 69/99 (69.70%), Postives = 78/99 (78.79%), Query Frame = 2

Query:    2 WLMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVGG 298
            WL  T+ L+VCYDR +LVPVIKGQEQL RTE++GVC+R F P STD +PS Q+ PWLRA+ KAARDGIAA LAM VLADE W G  KP G VAF GVGG
Sbjct:  107 WLQSTEPLLVCYDRQDLVPVIKGQEQLGRTEKLGVCSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGYTKPNGIVAFNGVGG 205

[Close]

BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE1_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.310e-37
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 2

Query:    2 WLMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVGG 298
            WL  T+LL+VCYDR ELVPVIKGQEQL RTE++G C+R F P STD + + Q+ PWLRA+ KAAR+GIAA LAM VLADE W GD KP G VAFYGVGG
Sbjct:  532 WLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGECSRTFDPKSTDPVTALQYGPWLRADRKAARNGIAAYLAMRVLADEVWTGDTKPNGIVAFYGVGG 630

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BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN1_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 3.210e-37
Identity = 68/99 (68.69%), Postives = 77/99 (77.78%), Query Frame = 2

Query:    2 WLMDTDLLVVCYDRAELVPVIKGQEQLARTEQVGVCARGFGPSSTDSIPSSQFQPWLRANSKAARDGIAASLAMNVLADEKWAGDQKPTGTVAFYGVGG 298
            WL  T+LLVVCYDR ELVPVIKG EQL R+E++G C+R F P STD +PS Q+  WLRA+ KAARDGIAA LA  VLAD+ W GD KP G VAFYGVGG
Sbjct:   57 WLQSTELLVVCYDRQELVPVIKGHEQLGRSEKIGECSRTFDPKSTDPVPSLQYGSWLRADGKAARDGIAAHLATRVLADDVWTGDTKPNGIVAFYGVGG 155

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig934.17498.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	2.500e-46	86.60	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	9.220e-45	84.54	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.640e-41	71.43	protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131...	[more]
Uncharacterized	1.830e-40	72.73	protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131...	[more]
Uncharacterized	2.420e-40	72.73	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.460e-40	72.73	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.560e-40	72.73	protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	8.390e-39	69.70	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	2.310e-37	69.70	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	3.210e-37	68.69	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig934	contig	Ecto-sp9_F_contig934:22168..22467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	300
Cds size	300
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931012.8558197-CDS-Ecto-sp9_F_contig934:22167..22467	1622931012.8558197-CDS-Ecto-sp9_F_contig934:22167..22467	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig934 22168..22467 +
1692278992.6773438-CDS-Ecto-sp9_F_contig934:22167..22467	1692278992.6773438-CDS-Ecto-sp9_F_contig934:22167..22467	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig934 22168..22467 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig934.17498.1	prot_Ecto-sp9_F_contig934.17498.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig934 22168..22467 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig934:22168..22467+
coding sequence from alignment at Ecto-sp9_F_contig934:22168..22467+

protein sequence of mRNA_Ecto-sp9_F_contig934.17498.1

>prot_Ecto-sp9_F_contig934.17498.1 ID=prot_Ecto-sp9_F_contig934.17498.1|Name=mRNA_Ecto-sp9_F_contig934.17498.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=100bp
MADGHRPTRSVLRSRRTCTRHQRARTAGKDRASRGVCAGLWSVVNRLDSF
VAVSAMASGQFKGGAGWNRRKSRDERAGRRKVGRRPKANWNRCVLRCRG*

mRNA from alignment at Ecto-sp9_F_contig934:22168..22467+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig934.17498.1 ID=mRNA_Ecto-sp9_F_contig934.17498.1|Name=mRNA_Ecto-sp9_F_contig934.17498.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp9_F_contig934:22168..22467+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTGATGGACACCGACCTACTCGTAGTGTGCTACGATCGCGCCGAAC
TTGTACCCGTCATCAAAGGGCAAGAACAGCTGGCAAGGACCGAGCAAGTA
GGGGTGTGTGCGCGGGGCTTTGGTCCGTCGTCAACAGACTCGATTCCTTC
GTCGCAGTTTCAGCCATGGCTTCGGGCCAATTCAAAGGCGGCGCGGGATG
GAATCGCCGCAAGTCTCGCGATGAACGTGCTGGCAGACGAAAAGTGGGCC
GGAGACCAAAAGCCAACTGGAACCGTTGCGTTTTACGGTGTAGGGGGTGA

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig934:22168..22467+

>mRNA_Ecto-sp9_F_contig934.17498.1 ID=mRNA_Ecto-sp9_F_contig934.17498.1|Name=mRNA_Ecto-sp9_F_contig934.17498.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp9_F_contig934:22168..22467+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTGATGGACACCGACCTACTCGTAGTGTGCTACGATCGCGCCGAAC
TTGTACCCGTCATCAAAGGGCAAGAACAGCTGGCAAGGACCGAGCAAGTA
GGGGTGTGTGCGCGGGGCTTTGGTCCGTCGTCAACAGACTCGATTCCTTC
GTCGCAGTTTCAGCCATGGCTTCGGGCCAATTCAAAGGCGGCGCGGGATG
GAATCGCCGCAAGTCTCGCGATGAACGTGCTGGCAGACGAAAAGTGGGCC
GGAGACCAAAAGCCAACTGGAACCGTTGCGTTTTACGGTGTAGGGGGTGA
ATGGCTGATGGACACCGACCTACTCGTAGTGTGCTACGATCGCGCCGAAC
TTGTACCCGTCATCAAAGGGCAAGAACAGCTGGCAAGGACCGAGCAAGTA
GGGGTGTGTGCGCGGGGCTTTGGTCCGTCGTCAACAGACTCGATTCCTTC
GTCGCAGTTTCAGCCATGGCTTCGGGCCAATTCAAAGGCGGCGCGGGATG
GAATCGCCGCAAGTCTCGCGATGAACGTGCTGGCAGACGAAAAGTGGGCC
GGAGACCAAAAGCCAACTGGAACCGTTGCGTTTTACGGTGTAGGGGGTGA