mRNA_Ecto-sp9_F_contig934.17495.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig934.17495.1
Unique NamemRNA_Ecto-sp9_F_contig934.17495.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig934.17495.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig934contigEcto-sp9_F_contig934:3595..4064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size470
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.7822263-UTR-Ecto-sp9_F_contig934:3594..37611622931012.7822263-UTR-Ecto-sp9_F_contig934:3594..3761Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig934 3595..3761 +
1692278992.6549873-UTR-Ecto-sp9_F_contig934:3594..37611692278992.6549873-UTR-Ecto-sp9_F_contig934:3594..3761Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig934 3595..3761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.802769-CDS-Ecto-sp9_F_contig934:3761..40641622931012.802769-CDS-Ecto-sp9_F_contig934:3761..4064Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig934 3762..4064 +
1692278992.6649382-CDS-Ecto-sp9_F_contig934:3761..40641692278992.6649382-CDS-Ecto-sp9_F_contig934:3761..4064Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig934 3762..4064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig934.17495.1prot_Ecto-sp9_F_contig934.17495.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig934 3762..4064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig934.17495.1

>prot_Ecto-sp9_F_contig934.17495.1 ID=prot_Ecto-sp9_F_contig934.17495.1|Name=mRNA_Ecto-sp9_F_contig934.17495.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=101bp
MCCPPQPPTCARTSANILLFHVFRIPRGMVHTCLSHPHMPDFKRMGYSSN
SLWHTSLPPGATRADKNVYKDNLYGSLRTGSKYIGCRKKGNMYKQMLSIL
*
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mRNA from alignment at Ecto-sp9_F_contig934:3595..4064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig934.17495.1 ID=mRNA_Ecto-sp9_F_contig934.17495.1|Name=mRNA_Ecto-sp9_F_contig934.17495.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=470bp|location=Sequence derived from alignment at Ecto-sp9_F_contig934:3595..4064+ (Ectocarpus species9 EcSCA_722f female)
CCCTTCCTTCCGCGAAAAATGAGCGCCTCTCTGTCCCCGTTAGCGCTGGC
TATGGACAAGGCATGCGAGGGTATTATTCCACCCCGCTATCGGCACCATT
CGGCAGTCACTCGTGTTTCCGGCATCATGACGAAAAACTAAAATAATGTA
TGTAGCATATTAGGTCTATGTGCTGCCCCCCCCAACCCCCGACATGTGCA
CGTACGAGTGCCAACATACTGCTGTTCCATGTTTTTCGGATTCCGCGTGG
CATGGTACACACCTGCCTCTCTCATCCTCACATGCCGGATTTCAAACGTA
TGGGATACAGCTCAAACAGTCTATGGCACACTTCCTTGCCACCAGGCGCG
ACCCGCGCCGACAAAAATGTTTATAAAGACAACTTATACGGTAGTCTCCG
CACCGGAAGTAAATATATCGGATGCCGAAAAAAGGGGAACATGTACAAAC
AAATGCTAAGTATCCTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig934:3595..4064+

>mRNA_Ecto-sp9_F_contig934.17495.1 ID=mRNA_Ecto-sp9_F_contig934.17495.1|Name=mRNA_Ecto-sp9_F_contig934.17495.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp9_F_contig934:3595..4064+ (Ectocarpus species9 EcSCA_722f female)
ATGTGCTGCCCCCCCCAACCCCCGACATGTGCACGTACGAGTGCCAACAT
ACTGCTGTTCCATGTTTTTCGGATTCCGCGTGGCATGGTACACACCTGCC
TCTCTCATCCTCACATGCCGGATTTCAAACGTATGGGATACAGCTCAAAC
AGTCTATGGCACACTTCCTTGCCACCAGGCGCGACCCGCGCCGACAAAAA
TGTTTATAAAGACAACTTATACGGTAGTCTCCGCACCGGAAGTAAATATA
TCGGATGCCGAAAAAAGGGGAACATGTACAAACAAATGCTAAGTATCCTG
TAAATGTGCTGCCCCCCCCAACCCCCGACATGTGCACGTACGAGTGCCAA
CATACTGCTGTTCCATGTTTTTCGGATTCCGCGTGGCATGGTACACACCT
GCCTCTCTCATCCTCACATGCCGGATTTCAAACGTATGGGATACAGCTCA
AACAGTCTATGGCACACTTCCTTGCCACCAGGCGCGACCCGCGCCGACAA
AAATGTTTATAAAGACAACTTATACGGTAGTCTCCGCACCGGAAGTAAAT
ATATCGGATGCCGAAAAAAGGGGAACATGTACAAACAAATGCTAAGTATC
CTGTAA
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