mRNA_Ecto-sp9_F_contig933.17492.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig933.17492.1
Unique NamemRNA_Ecto-sp9_F_contig933.17492.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig933.17492.1 vs.
Match: Centrosomal (protein of 19 kDa n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N7T8_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 1.350e-7
Identity = 36/127 (28.35%), Postives = 61/127 (48.03%), Query Frame = 1 
Query:    1 MITQDSAEVVTNRLARKFPNHLGSGVVRRAQLERLVSKLQD------------LTTLPSSLKET---AAEVVQEDFNRASEADLAAAKKRMSVVFEQNLRKPGSPGYVHDLRKDFGRAEEECDWDDD 336
            + ++ SA  + + L  + PNHL   +V+R+QL +LV+K+ D            +T  P  +K     A      + N+ S  ++  AK  M+  F +N  KPG   + +D R +F +     +WDDD
Sbjct:    6 LTSRSSAGQIVDALITRHPNHLSPKIVKRSQLNKLVTKMIDKLTSSAMRERGGITAAPPPIKSAQPAAGFDGDTNLNKLSHEEIVKAKGVMNETFVENQVKPGDAAFQYDKRVEFKQPAAASEWDDD 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig933.17492.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Centrosomal1.350e-728.35protein of 19 kDa n=1 Tax=Planoprotostelium fungiv... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig933contigEcto-sp9_F_contig933:1247..2623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog65071.PYU1_T003370
EggNOG free text desc.CEP19-like protein
EggNOG OGs1MJQY@121069,2999I@1,2RGB7@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size962
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig933.17492.1prot_Ecto-sp9_F_contig933.17492.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig933 1247..2006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.235474-CDS-Ecto-sp9_F_contig933:1246..13971622931012.235474-CDS-Ecto-sp9_F_contig933:1246..1397Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig933 1247..1397 +
1692278992.3492112-CDS-Ecto-sp9_F_contig933:1246..13971692278992.3492112-CDS-Ecto-sp9_F_contig933:1246..1397Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig933 1247..1397 +
1622931012.2561715-CDS-Ecto-sp9_F_contig933:1812..20061622931012.2561715-CDS-Ecto-sp9_F_contig933:1812..2006Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig933 1813..2006 +
1692278992.361234-CDS-Ecto-sp9_F_contig933:1812..20061692278992.361234-CDS-Ecto-sp9_F_contig933:1812..2006Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig933 1813..2006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.2758105-UTR-Ecto-sp9_F_contig933:2006..26231622931012.2758105-UTR-Ecto-sp9_F_contig933:2006..2623Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig933 2007..2623 +
1692278992.375029-UTR-Ecto-sp9_F_contig933:2006..26231692278992.375029-UTR-Ecto-sp9_F_contig933:2006..2623Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig933 2007..2623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig933.17492.1

>prot_Ecto-sp9_F_contig933.17492.1 ID=prot_Ecto-sp9_F_contig933.17492.1|Name=mRNA_Ecto-sp9_F_contig933.17492.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=115bp
MITQDSAEVVTNRLARKFPNHLGSGVVRRAQLERLVSKLQDLTTLPSSLK
ETAAEVVQEDFNRASEADLAAAKKRMSVVFEQNLRKPGSPGYVHDLRKDF
GRAEEECDWDDDSC*
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mRNA from alignment at Ecto-sp9_F_contig933:1247..2623+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig933.17492.1 ID=mRNA_Ecto-sp9_F_contig933.17492.1|Name=mRNA_Ecto-sp9_F_contig933.17492.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1377bp|location=Sequence derived from alignment at Ecto-sp9_F_contig933:1247..2623+ (Ectocarpus species9 EcSCA_722f female)
ATGATAACACAGGACTCCGCAGAAGTTGTGACCAATCGACTGGCCCGCAA
GTTTCCCAATCACCTCGGATCTGGGGTGGTGAGACGCGCTCAGCTCGAAC
GCCTCGTCTCCAAGCTGCAAGATCTCACAACACTACCAAGCTCGCTAAAA
GGTGACTGCCTACAACGGCTTGATGGCATTTCAACCTCAGCCTTGCTTTG
ATGCAAAAGAAATGTCGTGGTAATAACGAAGAGAGGGTGATTTTGGGGGT
TGGCAAGGATTTCAACATACAATCAACAATAGGATTTTTCGTCTACTTCT
GCCATGTTTTTCACATGGACTTATCTGATAGAGACACCACAATCACGCAT
TCAACATCAGCATCACACTTCATCCGAGCACACGTCTAACTCGTACTTCA
GATAAACGGCTTTGTTTGGTCCAATGACGACATAAGCTTGATGTCCCTGC
CGTATGTGTATTTTACTTCGTTTGTGCCTGTTTGCCGGCGTTGTTCAATG
TCCCAATCACCTCATCGTCTGAAGAAGGTGATGAGCAAATAACCACTTGT
TCGTTTGTTGCAACAGAAACAGCTGCAGAAGTGGTACAAGAAGATTTCAA
CCGTGCATCGGAGGCTGACTTAGCTGCCGCCAAAAAGAGAATGAGCGTCG
TGTTCGAACAAAACCTGCGCAAGCCAGGCTCTCCTGGGTACGTCCACGAC
TTGAGAAAGGATTTCGGCCGGGCGGAAGAGGAATGCGACTGGGATGACGA
TTCATGTTGACGAGGACGCGTTGCATGGACGTTGAAATGATAGACGTCTG
TCGTTATCAGTAGTGCGCGCCCGTGCCAACGGAAATCACCGAAGACATCA
GTATCCGTAGGTCAGAACGGTCCTCGGCGCGACAACGACAACGGCAGAAG
CAACGAATACAGAGTTTCATGCTGAAATGTTTGGACCCTGTTGTTGACGG
TACTACCACAACTCAGTGGTATAATTGCATGGGAAAGTCCCCTCTCAACG
GGAGTAGGGGCTGGTCTGAAGCGGCCGTGTGGGGAGCGTATTACGTAAGT
GTCGGCAGAAAATCTGCAAGTGGGGTATGAATCGATATTGTTACGACATG
CGTCACGCGTACACGCCGGCGAGGTCTCTGGCTACAGGACTTCACCATTC
CCCGTAAGCTATTGCTGCTATGTCGAACAACGTGATAGCCTCAAGTGCAT
TGTGTCCTGTCTCCTGCGCGAAGAAATGGGGCGCCATCTTCCTGAAGTCG
TACGTACACTGACATAGCCAGAAATATCAAGCTAAGATTTGTTTCACAGA
TGTACGAACAGGTGTGTACCTCGATACTTGCGCGCACAAGACGACAGGAT
GCCAGATTATTGCCATCGATGAAGGTC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig933:1247..2623+

>mRNA_Ecto-sp9_F_contig933.17492.1 ID=mRNA_Ecto-sp9_F_contig933.17492.1|Name=mRNA_Ecto-sp9_F_contig933.17492.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp9_F_contig933:1247..2623+ (Ectocarpus species9 EcSCA_722f female)
ATGATAACACAGGACTCCGCAGAAGTTGTGACCAATCGACTGGCCCGCAA
GTTTCCCAATCACCTCGGATCTGGGGTGGTGAGACGCGCTCAGCTCGAAC
GCCTCGTCTCCAAGCTGCAAGATCTCACAACACTACCAAGCTCGCTAAAA
GATGATAACACAGGACTCCGCAGAAGTTGTGACCAATCGACTGGCCCGCA
AGTTTCCCAATCACCTCGGATCTGGGGTGGTGAGACGCGCTCAGCTCGAA
CGCCTCGTCTCCAAGCTGCAAGATCTCACAACACTACCAAGCTCGCTAAA
AGAAACAGCTGCAGAAGTGGTACAAGAAGATTTCAACCGTGCATCGGAGG
CTGACTTAGCTGCCGCCAAAAAGAGAATGAGCGTCGTGTTCGAACAAAAC
CTGCGCAAGCCAGGCTCTCCTGGGTACGTCCACGACTTGAGAAAGGATTT
CGGCCGGGCGGAAGAGGAATGCGACTGGGATGACGATTCATGTTGAAAAC
AGCTGCAGAAGTGGTACAAGAAGATTTCAACCGTGCATCGGAGGCTGACT
TAGCTGCCGCCAAAAAGAGAATGAGCGTCGTGTTCGAACAAAACCTGCGC
AAGCCAGGCTCTCCTGGGTACGTCCACGACTTGAGAAAGGATTTCGGCCG
GGCGGAAGAGGAATGCGACTGGGATGACGATTCATGTTGA
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