mRNA_Ecto-sp9_F_contig93.17459.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig93.17459.1
Unique NamemRNA_Ecto-sp9_F_contig93.17459.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: F5/8 (type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI)

HSP 1 Score: 611 bits (1576), Expect = 2.790e-212
Identity = 293/303 (96.70%), Postives = 296/303 (97.69%), Query Frame = 1 
Query:    7 GPGVSLASVEVSTPFATGSYNAIVAFDATHCVQMCCEQEECARAVFNEGESICYLKGSEALASYHDVPATGVSTYTIDTREGKLCNSEPVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQASY 915
            GPGVSLASVEVSTPFATGSYNAIVAFDATHCVQMCCEQEECARAVFNEGESICYLKGSEALASYHDVPATGVSTYTIDTREG   +SEPVELVPTQCSSKRGVAFGFKES DLYTLK GISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQ+ADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDA GQA +
Sbjct:    5 GPGVSLASVEVSTPFATGSYNAIVAFDATHCVQMCCEQEECARAVFNEGESICYLKGSEALASYHDVPATGVSTYTIDTREG---SSEPVELVPTQCSSKRGVAFGFKESGDLYTLKTGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQQADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDAYGQADF 304
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ88_9PHAE)

HSP 1 Score: 541 bits (1394), Expect = 2.560e-189
Identity = 255/269 (94.80%), Postives = 263/269 (97.77%), Query Frame = 1 
Query:  106 MCCEQEECARAVFNEGESICYLKGSEALASYHDVPATGVSTYTIDTREGKLCNSEPVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQAS 912
            MCCEQEECARAVFNEGESICYLKGSEA+ASYHDVPA GVSTY+I+TREG   +SEPVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQ+ADDLGMELVSPAVNFCYGNCVEEDPI WLD+FFEACGGDVE RDFCGIT+IAIHSYTC+VKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQAS
Sbjct:    1 MCCEQEECARAVFNEGESICYLKGSEAVASYHDVPAIGVSTYSINTREG---HSEPVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQQADDLGMELVSPAVNFCYGNCVEEDPIKWLDDFFEACGGDVEGRDFCGITYIAIHSYTCKVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQAS 266
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: Putative (serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 3.480e-100
Identity = 157/303 (51.82%), Postives = 205/303 (67.66%), Query Frame = 1 
Query:    7 GPGVSLASVEVSTPFATGSYNAIVAFDATHCVQMCCEQEECARAVFNEGESICYLKGSEALASYHDVPATGVSTYTIDTREGKLCNSEPVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQASY 915
            G G+S  + E  TPF  G++  +VAF+  HCVQMCCE+ EC  AVF+  E++CYLK + AL S   V   G +T+ +  REG   +  PV   PT+C  KRGV+F FK++DDL  L  G+SWWY+WSP  +A  +  A  + G  Y+PMIWGE DL   RL +LA +G +S ++LGFNEPN+G QANLTPQEAA LW  V+ +A  LG E+VSPAVNFC G+C +EDP  WLD+FF AC G       C +T IA+H YTCEV+YLNK +H Y+ +YGLPIW+TEFAC  +A  ++   QA+Y
Sbjct:   36 GAGISDEAHEGLTPFELGTWKGVVAFNEDHCVQMCCERLECFVAVFDHAEALCYLKAAAALESTAFVSEEGFTTFELSVREG---DPSPVATEPTECHGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLANLASLGQSS-HMLGFNEPNFGSQANLTPQEAAALWSTVKSEAATLGAEIVSPAVNFCGGDCTKEDPYEWLDDFFSACEG-------CDVTAIAVHIYTCEVRYLNKILHGYL-KYGLPIWITEFACADDAAYMNEASQAAY 326
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: glycoside (hydrolase family protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCFE65D)

HSP 1 Score: 176 bits (445), Expect = 2.410e-49
Identity = 91/210 (43.33%), Postives = 130/210 (61.90%), Query Frame = 1 
Query:  286 PTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQASY 915
            P   S KRGVA+G+  + DL  L   +SWWY+W+     +G+ ++    G  +VPM+WG   L  E+++++   G  + YLL FNEPN+G QANLTPQEAA LWPQV   AD  G+E+VSPA+N+C G+C + +P  W DEFF AC G       C + H+A+H Y C    L+ +I   +++Y  PIWLTEF+C  +A ++    Q +Y
Sbjct:   75 PPASSCKRGVAYGYHSAADLSALAPAVSWWYNWTVPP-DEGVRDSYQEIGVEFVPMLWGAASL--EQMQEIP-AG--ARYLLAFNEPNFGSQANLTPQEAAALWPQVEAVADAHGLEIVSPALNYCGGSCNKTNPFEWFDEFFAACQG-------CRVDHLAVHWYACHRDALSGYIEQ-MKQYERPIWLTEFSC-LDAMDVSVPVQLAY 269
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: Glyco_hydro_cc (domain-containing protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1E7A5_CHOCO)

HSP 1 Score: 173 bits (439), Expect = 1.930e-48
Identity = 95/211 (45.02%), Postives = 118/211 (55.92%), Query Frame = 1 
Query:  271 PVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSP----YLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTC-------EVKYLNKHIHMYVQRYGLPIWLTEFAC 870
            P    PT C  KRGVA+G+    D+  L   +SWWY+W+         +A  T G  YVPM+WG G L   R   +A   D  P    +LLGFNEPN+GEQANL+  EAA LWP V   A   G+ELVSPAVN+C G+C E DP T+LD+FF AC G       C +  I +H YT        + ++L   I  Y  R+  PIWLTEFAC
Sbjct:   59 PPSSQPTGC--KRGVAYGYHSQADMLALSPAVSWWYNWTHVPDEGVRPDAYTTIGVEYVPMVWGGGGLDAARATQIA---DEMPGGVRFLLGFNEPNFGEQANLSASEAAALWPHVEAIASARGLELVSPAVNYCGGSCQETDPFTYLDDFFAACAG-------CRVDAIGVHIYTACQGDGTNKARWLIDQIERYKARFDQPIWLTEFAC 257
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: Glyco_hydro_cc (domain-containing protein n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JJB9_9DELT)

HSP 1 Score: 172 bits (437), Expect = 2.140e-48
Identity = 89/197 (45.18%), Postives = 114/197 (57.87%), Query Frame = 1 
Query:  304 KRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAW-VGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTC-------EVKYLNKHIHMYVQRYGLPIWLTEFAC 870
            KRGVA+G+    D+  L   +SWWY+W+         +   T G  YVPM+WG G L   R  ++A  + D   +LLGFNEPN+GEQAN++  EAA LWP V   AD  G+ LVSPAVNFC G+C E DP  +LD+FF AC G       C +  I IH YT        + ++L  HI  Y  R+  P+WLTEFAC
Sbjct:   46 KRGVAYGYHSKADMAALSPAVSWWYNWAHVPDEGVKPDVYKTLGVEYVPMVWGGGGLDSNRAAEIAAEIPDGVNFLLGFNEPNFGEQANMSAAEAAALWPHVEAVADARGLALVSPAVNFCGGSCQETDPFKYLDDFFAACEG-------CRVDSIGIHIYTACQGDGTNKARWLINHIETYKTRFDKPLWLTEFAC 235
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: glycoside (hydrolase family protein n=1 Tax=Polyangium fumosum TaxID=889272 RepID=UPI001478295C)

HSP 1 Score: 171 bits (434), Expect = 1.680e-47
Identity = 90/203 (44.33%), Postives = 116/203 (57.14%), Query Frame = 1 
Query:  286 PTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAW-VGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTC-------EVKYLNKHIHMYVQRYGLPIWLTEFAC 870
            PT C  KRGVA+G+    D+  L   +SWWY+W+         +     G  YVPM+WG G L   +   +A  + D + +LLGFNEPN+GEQANL+  +AA LWP V   AD  G+ LVSPAVNFC G+C E DP  +LD+FF AC G       C + +I IH YT        + ++L  HI  Y  R+  P WLTEFAC
Sbjct:   82 PTGC--KRGVAYGYHSKADMQALSPAVSWWYNWAHEPDEGLKPDVYKMLGVEYVPMVWGGGGLDSAQATKIAGEIPDGTSFLLGFNEPNFGEQANLSATQAAALWPHVEAIADARGLALVSPAVNFCGGSCQETDPFKYLDDFFAACEG-------CRVDYIGIHIYTACQGDGTNKARWLINHIETYKTRFDKPFWLTEFAC 275
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: Glycosyl (hydrolase catalytic core n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2ARD7_9DELT)

HSP 1 Score: 170 bits (431), Expect = 2.890e-47
Identity = 90/207 (43.48%), Postives = 123/207 (59.42%), Query Frame = 1 
Query:  298 SSKRGVAFGFKESDDLYTLKKGISWWYDWS-PGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQASY 915
            S KRG+A+G+    DL  L  G+SWWY+W+ P     G  +A   +   +VPM+WG G L ++       + + + YLL FNEPN+G QA+LTPQEAA LWPQV   AD  G+E+VSPA+N+C G+C + DP  W DEFF AC G       C + H+A+H Y C    L  +I   +++Y  PIWLTEF+C  +A +     Q  Y
Sbjct:   80 SCKRGIAYGYHSHADLAALAPGVSWWYNWAVPPDPDVGDYQALNVE---FVPMLWGGGSLDQD-----PPIPEGARYLLAFNEPNFGAQADLTPQEAAALWPQVEAVADAHGLEIVSPALNYCGGDCNKTDPFEWFDEFFAACPG-------CRVDHLAVHWYACTRDALTWYIGE-MKKYERPIWLTEFSC-LDAEDKSVAVQKQY 269
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: Glyco_hydro_cc (domain-containing protein n=2 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JHY0_9DELT)

HSP 1 Score: 169 bits (429), Expect = 3.880e-47
Identity = 88/210 (41.90%), Postives = 116/210 (55.24%), Query Frame = 1 
Query:  286 PTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDANGQASY 915
            P  C  KRGVA+G+    DL  L KGI WWY+W+       + +A    G  YVPM WGE  L        A V   + +LLGFNEPN+G QANLTP +AA LWPQ+   A+   + +VSPAVNFC G C   DP  WLD+FF AC G       C +  IA+H Y C+   L  ++  +  +Y   +WLTEF+C  + ++     Q +Y
Sbjct:   58 PAAC--KRGVAYGYHSVADLTALSKGIGWWYNWATKPDNTDVADAHAGLGVEYVPMAWGEASLVGLS----AEVPADARHLLGFNEPNFGSQANLTPTQAAALWPQIEDFAEQHDLVIVSPAVNFCGGTCNVADPFEWLDQFFAACQG-------CTVDAIAMHWYACDGSALTWYLQQFESKYTQKLWLTEFSC-LDGSDTSEPAQQAY 253
[Close]
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Match: Putative (secreted protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017T4U7_9DELT)

HSP 1 Score: 170 bits (430), Expect = 6.590e-47
Identity = 92/208 (44.23%), Postives = 118/208 (56.73%), Query Frame = 1 
Query:  271 PVELVPTQCSSKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVPMIWGEGDLTEERLRDLA-WVGDTSPYLLGFNEPNYGEQANLTPQEAADLWPQVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDFCGITHIAIHSYTC-------EVKYLNKHIHMYVQRYGLPIWLTEFAC 870
            P    PT C  KRGVA+G+  + D+  L  G+SWWY+W+         +A  T G  YVPM+WG   L   R   +A  + D   +LLGFNEPN+G QANL+  EAA LWP V   AD  G+ LVSPAVN+C G C E DP T+LD+FF AC G       C + ++ +H YT        + ++L   I  Y  R+  PIWLTEFAC
Sbjct:   77 PPSSHPTGC--KRGVAYGYHSTADMQALSPGVSWWYNWTHVPDEGVRPDAYETLGVDYVPMVWGGDGLDGARAAQIADEIPDGVRFLLGFNEPNFGAQANLSAAEAAALWPHVEAIADARGLALVSPAVNYCGGACQETDPFTYLDDFFAACEG-------CRVDYLGVHIYTACQGDGTNKAQWLINQIETYKTRFDKPIWLTEFAC 275
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig93.17459.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F5/82.790e-21296.70type C domain protein n=1 Tax=Ectocarpus siliculos... [more]
Uncharacterized2.560e-18994.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Putative3.480e-10051.82serine rich protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
glycoside2.410e-4943.33hydrolase family protein n=1 Tax=Nannocystis pusil... [more]
Glyco_hydro_cc1.930e-4845.02domain-containing protein n=1 Tax=Chondromyces cro... [more]
Glyco_hydro_cc2.140e-4845.18domain-containing protein n=1 Tax=Polyangium fumos... [more]
glycoside1.680e-4744.33hydrolase family protein n=1 Tax=Polyangium fumosu... [more]
Glycosyl2.890e-4743.48hydrolase catalytic core n=1 Tax=Nannocystis exede... [more]
Glyco_hydro_cc3.880e-4741.90domain-containing protein n=2 Tax=Polyangium fumos... [more]
Putative6.590e-4744.23secreted protein n=2 Tax=Chondromyces apiculatus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig93contigEcto-sp9_F_contig93:29644..33672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.2
Seed ortholog evalue1.3e-85
Seed eggNOG ortholog2880.D7FKU0
Preferred nameTOS1
GOsGO:0000271,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0003843,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005975,GO:0005976,GO:0006073,GO:0006074,GO:0006075,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009272,GO:0009277,GO:0009987,GO:0010383,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0033692,GO:0034406,GO:0034407,GO:0034410,GO:0034411,GO:0034637,GO:0034645,GO:0035251,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0051273,GO:0051274,GO:0051278,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0071966,GO:0071969,GO:0071970,GO:1901576
EggNOG free text desc.Putative TOS1-like glycosyl hydrolase (DUF2401)
EggNOG OGs2CBPA@1,2QSI7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size918
Cds size918
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931007.436089-CDS-Ecto-sp9_F_contig93:29643..297481622931007.436089-CDS-Ecto-sp9_F_contig93:29643..29748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 29644..29748 +
1692278990.2902863-CDS-Ecto-sp9_F_contig93:29643..297481692278990.2902863-CDS-Ecto-sp9_F_contig93:29643..29748Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 29644..29748 +
1622931007.4511142-CDS-Ecto-sp9_F_contig93:30796..309501622931007.4511142-CDS-Ecto-sp9_F_contig93:30796..30950Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 30797..30950 +
1692278990.3019986-CDS-Ecto-sp9_F_contig93:30796..309501692278990.3019986-CDS-Ecto-sp9_F_contig93:30796..30950Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 30797..30950 +
1622931007.4678335-CDS-Ecto-sp9_F_contig93:31296..314111622931007.4678335-CDS-Ecto-sp9_F_contig93:31296..31411Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 31297..31411 +
1692278990.316289-CDS-Ecto-sp9_F_contig93:31296..314111692278990.316289-CDS-Ecto-sp9_F_contig93:31296..31411Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 31297..31411 +
1622931007.4791954-CDS-Ecto-sp9_F_contig93:32000..321871622931007.4791954-CDS-Ecto-sp9_F_contig93:32000..32187Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 32001..32187 +
1692278990.3246307-CDS-Ecto-sp9_F_contig93:32000..321871692278990.3246307-CDS-Ecto-sp9_F_contig93:32000..32187Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 32001..32187 +
1622931007.4937446-CDS-Ecto-sp9_F_contig93:32428..325511622931007.4937446-CDS-Ecto-sp9_F_contig93:32428..32551Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 32429..32551 +
1692278990.333025-CDS-Ecto-sp9_F_contig93:32428..325511692278990.333025-CDS-Ecto-sp9_F_contig93:32428..32551Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 32429..32551 +
1622931007.5094788-CDS-Ecto-sp9_F_contig93:33074..331821622931007.5094788-CDS-Ecto-sp9_F_contig93:33074..33182Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 33075..33182 +
1692278990.3426414-CDS-Ecto-sp9_F_contig93:33074..331821692278990.3426414-CDS-Ecto-sp9_F_contig93:33074..33182Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 33075..33182 +
1622931007.5247235-CDS-Ecto-sp9_F_contig93:33546..336721622931007.5247235-CDS-Ecto-sp9_F_contig93:33546..33672Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 33547..33672 +
1692278990.3509555-CDS-Ecto-sp9_F_contig93:33546..336721692278990.3509555-CDS-Ecto-sp9_F_contig93:33546..33672Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 33547..33672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig93.17459.1prot_Ecto-sp9_F_contig93.17459.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig93 29644..33672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig93.17459.1

>prot_Ecto-sp9_F_contig93.17459.1 ID=prot_Ecto-sp9_F_contig93.17459.1|Name=mRNA_Ecto-sp9_F_contig93.17459.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=306bp
MSGPGVSLASVEVSTPFATGSYNAIVAFDATHCVQMCCEQEECARAVFNE
GESICYLKGSEALASYHDVPATGVSTYTIDTREGKLCNSEPVELVPTQCS
SKRGVAFGFKESDDLYTLKKGISWWYDWSPGSLADGILEASLTQGSLYVP
MIWGEGDLTEERLRDLAWVGDTSPYLLGFNEPNYGEQANLTPQEAADLWP
QVRQKADDLGMELVSPAVNFCYGNCVEEDPITWLDEFFEACGGDVEDRDF
CGITHIAIHSYTCEVKYLNKHIHMYVQRYGLPIWLTEFACGFEATELDAN
GQASY*
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mRNA from alignment at Ecto-sp9_F_contig93:29644..33672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig93.17459.1 ID=mRNA_Ecto-sp9_F_contig93.17459.1|Name=mRNA_Ecto-sp9_F_contig93.17459.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4029bp|location=Sequence derived from alignment at Ecto-sp9_F_contig93:29644..33672+ (Ectocarpus species9 EcSCA_722f female)
ATGTCAGGGCCGGGAGTCTCGCTAGCGTCGGTGGAAGTCTCCACCCCCTT
CGCCACCGGCTCGTACAACGCAATTGTCGCTTTCGATGCGACACACTGCG
TCCAGGTGAACCCACAAGCTATTACAGCACGGACACACGGCAGATACTGC
AACTTTCCCCCGTATCTAAACCCTTAACCCTGCCTGTTGTTGTTGTTATG
GCTGGTCTAATCCAGATTGCCTCTATCATAGTTTGTACTCGAGAGTAATT
GTAGTCGACCGTTGAGTTGAGAAAAAAAAAATGTTCCGAGATTGACTATA
TACCACTTTTTTGTAGACTACTACTTACTGTGGTCCACAACTTAGCGCCC
ACAAAACAAGAAAAAAAAAACGGAAACTGGACAGCTCGACTACTCCCAGA
AAATCCCCAAAGTTCTCGAAATAAACGCAAGCCCTTTGACGGACGACTGG
TTGATTGGGTAAGACGAAAATAATGTAGATGTGGGCTGTTTGGCATCGGA
TTTATTGTACTGCCGACTGCTCTACATTAATACACGATAGAAAACCCGCA
GGATTCGTATCAAACCGGAATCGAGGACGCAATACCTTACAACCCCTTGT
CAAGACAATCCTGTCGCTACGTATTGGGCAGCGATTGATTGTGTGACAAC
ACCCATCACCGCACGGCTGTCACATGCTTTGAAGACATCGAACGAAAGCG
CTCGAAAATTTCCCCCTCAACACTAGCCTTCAACCAGCAGCCTGGAGGCG
TACCTCCAGCAGGTTGACTGCCGTAAGACCTCCTTCCAGGGGTATTTTCA
TTTCTTTCGGTTCGAGCAGGAACTTGAAATAAGTTCAACTGAAACCATAA
AACGTCATCGGAGCCCCTCATTCGACTTCTCCGGGGAATCTACAGTAGGG
AATGCACATATCGTGGAGACCGGTGAAAGCGTTCATATACGAGCGTCCAT
GTGTTGTAGGAAGAGCGGTTCAGTGGAAGCTTCCATGAATTCAACGGAAC
CCAATTTGGAGCTTCGATATAAGGCAGGAGTAGCGCAAGACCATTGCAAA
ATGCCCTTCTCACGACGCCCTACACAGATGGGGTAACCCGCCAATTTTCC
CCGGCAATTAATTATTAAAGTTTCCATTCCGTTGTGCTACCTACACGCTG
CAGATGTGCTGCGAGCAAGAAGAATGTGCCCGTGCTGTCTTCAATGAAGG
GGAATCTATCTGCTACCTCAAGGGGTCCGAAGCGTTGGCGAGCTACCACG
ACGTGCCCGCCACCGGCGTATCAACTTATACCATCGACACAAGAGAAGGC
AAGCTCTGTCGCGTATACCGAAGCTGCATGAAAGCGCTTCGATGAGAACA
CTCAGCGACACCGATTTTTTTCGATTTTGCGCAGGTATTCAGGCTGCCGA
AACATCTTGTGGAGGTTCATCGCACAGATTCACTATTTTCCAAAAGAATG
CGAGCTTTGGGTTCGATGCGACCAATGCCTGACATCGTAGAGATGTCCGT
CAGAAGCAGGAGAGTGCTATGTGGTACACGAGTGTTGTGGTTGTTATACA
TGGGCCGCGACGCGGTGTCTTTGTTGCTAGGTCTTCGCGGCTAGATATAT
CACTGTTCGATGTGGATCATGAGGCTTTTACTTTTCTCCTGCAATAAATA
AAGGTAACTCCGAGCCTGTGGAGCTGGTACCGACGCAGTGCAGCAGCAAG
CGAGGGGTTGCTTTTGGGTTCAAAGAATCGGACGACCTGTACACTCTGAA
GAAGGGAATTTCTTGGTGGTGAGAGTCAATCGTTCTAAAACACCCGGAAG
GAAGTACGTCGTGTGTCTTTCGGGTGATAAAAATAAGTACCCTTTGCATG
ACGGTCTCAAGGAAACACATCATCACGACCCTAGGGAACATGTCCACTTG
TGGCCAACTGTTGAATATTGCTGACCACCCGAAAACTCTTGGAACGGCAA
CAATCTCTGCTTCCTCGGGCTATACTTGCTGTAGTACCTGAATGTTTTGT
TCACTCGCACTCGGAATCTAGCAATTCCAAAGTATCAGGACGTGCTCGTC
TCATTCTGCTTTTTTTTTTTATGTCAGACACGTGGTGATTTAATCCGTTT
CCACGTCCTTGAATGAGCACCTGGGATGTGCAAGTTTGGATAAAGAGATG
CTTCACGGAGGGATGACGCCAATCGCAGAAAAAACAAGGTTGTGATTGCT
AGCAATACCCAAGCACAGCACGATTCTGATAGTTGCCTCGGTCCGCTACC
CTTTACGACTCACCTGCACAAACATGGATATAAAAAGGAAAAAGAAGAAG
CACGAGAAATAATACCAACCACAACAAATCACTAGACACGCGACCATGCC
GTGTCAGGTATGATTGGTCCCCGGGGTCCCTCGCGGACGGAATTTTGGAA
GCATCGCTGACCCAGGGCTCACTGTATGTTCCCATGATCTGGGGAGAGGG
CGACTTGACAGAGGAGCGCCTGAGAGATCTTGCGTGGGTAGGGGACACCT
CTCCTTACTTGCTCGGCTTCAACGAGCCGAACTACGGAGAACAGGTGCGT
GTCGGGAAGTGGAGGCGCGGATCGGGTTGGGCACAAGGGTATGAAGACGC
AAGGACCACCAGGGTCGACGTCGCCACAGACCAAAACAATGATGGCAATG
CTAGCATTTCAAGTGTTTTGTTCCATGCACTACCTTCAATCTGTGTATTG
CGCCCCCGTTCAGATCCCAGCAAAACCATCTATCTTTCGATCGATCCGCC
CTTTAGTGTCTCCGCTGCCGAACACGTACGTTCAGGCAAATCTCACCCCT
CAGGAAGCGGCTGACCTGTGGCCTCAAGTTCGACAAAAGGCGGACGATTT
GGGCATGGAGCTGGTGTCCCCAGCCGTCAACTTCTGCTACGGGAATTGTG
TCGAAGAGGTACTGTACAACCCAAAGCTATACTCGGTCATCGAATACCGA
GAGCCAGCTGGCAGTTACAGCAAACGCCAGAAGTTGTTGCGGGAACTGGG
TCCGAGAGGTACTGCGTACGCATACAAGCAGCTCGAGTCGAAAAAATAGA
AAAATGACCACTCCCGCCCAAAGAGGCTAAGGGAGCGTTGATTCCGATCA
CAAACCGCGTACGTCGTAGAGGGAAACACCGAAAGACAAAACGCAAACAA
ATCGGCAGAATCAATATTTGCAGATCTCGAGCTCGTGTAATTGTAGCTAG
AACCTATTTTACTAGGGCCAGAATCGAGAATCCGACCCCCACTTTGAAAG
AGATCTGCGGCAGGATTTGCCGCAACGTCTGTCGATGTTTCCCCTCTGCC
GGAATCAACCAACCCCATTGGCAGAGAAGCGCGATGCCCCTGCGATTTGC
CCATCTCTTCGCGGTCTACATGTAGCCGCAAGGAAGAGACATTGCGAGAC
GTTGAATGACGTTTTTCGTGTGTTGGCGCAGGACCCCATCACGTGGCTGG
ATGAGTTCTTCGAGGCGTGCGGTGGTGACGTCGAAGACCGCGACTTCTGC
GGCATCACGCACATAGCCATCCATTCTTATACATGCGAGGTGGGTCCTTT
TTTTGTTGTGTTTGTTGACCCGATGGCCTTCTTGACGCCACAATCGATGG
CGTATTCCTTGGTTCGCTGACTCCGTTTGTTTGAAGAGAGGTGGACAACT
CTACACGGGAGCAGCTGCAATATACACTATTGAAGACAATCATTCATGAG
ATTGGGGCTAGCTCACAAGTTCCCAACGCGCGTTAGCTGTCGTTTGTCTC
AGATCCTGACACCATGCAAAGAGACCAACAAACTCTATCGGGGGGAATGT
GAACCGGACGCTAGTTTCAACTTCGCGACTCTAGACATCCTCTGCCACGT
CACCCTTGTCATTGTTTACCATAACTCGTCGTCAATGTGTACGCTCCACA
CAGGTCAAGTACCTGAACAAGCACATCCACATGTACGTCCAGCGGTACGG
TTTGCCGATCTGGCTGACCGAGTTCGCCTGCGGTTTCGAGGCAACCGAGC
TCGACGCAAACGGCCAGGCGAGTTATTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig93:29644..33672+

>mRNA_Ecto-sp9_F_contig93.17459.1 ID=mRNA_Ecto-sp9_F_contig93.17459.1|Name=mRNA_Ecto-sp9_F_contig93.17459.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1836bp|location=Sequence derived from alignment at Ecto-sp9_F_contig93:29644..33672+ (Ectocarpus species9 EcSCA_722f female)
ATGTCAGGGCCGGGAGTCTCGCTAGCGTCGGTGGAAGTCTCCACCCCCTT
CGCCACCGGCTCGTACAACGCAATTGTCGCTTTCGATGCGACACACTGCG
TCCAGATGTCAGGGCCGGGAGTCTCGCTAGCGTCGGTGGAAGTCTCCACC
CCCTTCGCCACCGGCTCGTACAACGCAATTGTCGCTTTCGATGCGACACA
CTGCGTCCAGATGTGCTGCGAGCAAGAAGAATGTGCCCGTGCTGTCTTCA
ATGAAGGGGAATCTATCTGCTACCTCAAGGGGTCCGAAGCGTTGGCGAGC
TACCACGACGTGCCCGCCACCGGCGTATCAACTTATACCATCGACACAAG
AGAAGGCAAGCTCTATGTGCTGCGAGCAAGAAGAATGTGCCCGTGCTGTC
TTCAATGAAGGGGAATCTATCTGCTACCTCAAGGGGTCCGAAGCGTTGGC
GAGCTACCACGACGTGCCCGCCACCGGCGTATCAACTTATACCATCGACA
CAAGAGAAGGCAAGCTCTGTAACTCCGAGCCTGTGGAGCTGGTACCGACG
CAGTGCAGCAGCAAGCGAGGGGTTGCTTTTGGGTTCAAAGAATCGGACGA
CCTGTACACTCTGAAGAAGGGAATTTCTTGGTGGTAACTCCGAGCCTGTG
GAGCTGGTACCGACGCAGTGCAGCAGCAAGCGAGGGGTTGCTTTTGGGTT
CAAAGAATCGGACGACCTGTACACTCTGAAGAAGGGAATTTCTTGGTGGT
ATGATTGGTCCCCGGGGTCCCTCGCGGACGGAATTTTGGAAGCATCGCTG
ACCCAGGGCTCACTGTATGTTCCCATGATCTGGGGAGAGGGCGACTTGAC
AGAGGAGCGCCTGAGAGATCTTGCGTGGGTAGGGGACACCTCTCCTTACT
TGCTCGGCTTCAACGAGCCGAACTACGGAGAACAGGTATGATTGGTCCCC
GGGGTCCCTCGCGGACGGAATTTTGGAAGCATCGCTGACCCAGGGCTCAC
TGTATGTTCCCATGATCTGGGGAGAGGGCGACTTGACAGAGGAGCGCCTG
AGAGATCTTGCGTGGGTAGGGGACACCTCTCCTTACTTGCTCGGCTTCAA
CGAGCCGAACTACGGAGAACAGGCAAATCTCACCCCTCAGGAAGCGGCTG
ACCTGTGGCCTCAAGTTCGACAAAAGGCGGACGATTTGGGCATGGAGCTG
GTGTCCCCAGCCGTCAACTTCTGCTACGGGAATTGTGTCGAAGAGGCAAA
TCTCACCCCTCAGGAAGCGGCTGACCTGTGGCCTCAAGTTCGACAAAAGG
CGGACGATTTGGGCATGGAGCTGGTGTCCCCAGCCGTCAACTTCTGCTAC
GGGAATTGTGTCGAAGAGGACCCCATCACGTGGCTGGATGAGTTCTTCGA
GGCGTGCGGTGGTGACGTCGAAGACCGCGACTTCTGCGGCATCACGCACA
TAGCCATCCATTCTTATACATGCGAGGACCCCATCACGTGGCTGGATGAG
TTCTTCGAGGCGTGCGGTGGTGACGTCGAAGACCGCGACTTCTGCGGCAT
CACGCACATAGCCATCCATTCTTATACATGCGAGGTCAAGTACCTGAACA
AGCACATCCACATGTACGTCCAGCGGTACGGTTTGCCGATCTGGCTGACC
GAGTTCGCCTGCGGTTTCGAGGCAACCGAGCTCGACGCAAACGGCCAGGC
GAGTTATTGAGTCAAGTACCTGAACAAGCACATCCACATGTACGTCCAGC
GGTACGGTTTGCCGATCTGGCTGACCGAGTTCGCCTGCGGTTTCGAGGCA
ACCGAGCTCGACGCAAACGGCCAGGCGAGTTATTGA
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