mRNA_Ecto-sp9_F_contig93.17458.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig93.17458.1
Unique NamemRNA_Ecto-sp9_F_contig93.17458.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig93.17458.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NI17_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-6
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 3 
Query:  306 EQCAKEGRREESCSCSEGNPCAVAYHCRDWPNRFEVA 416
            E   ++G + ESCSC EGNPCA AY C+DW NRFEVA
Sbjct:   60 ESTIQKGPKMESCSCIEGNPCADAYCCKDWKNRFEVA 96
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BLAST of mRNA_Ecto-sp9_F_contig93.17458.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JF58_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 6.560e-6
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 3 
Query:  324 GRREESCSCSEGNPCAVAYHCRDWPNRFEVA 416
            G++ ESCSC EGNPCA AY C+DW NRFEVA
Sbjct:  193 GKKMESCSCIEGNPCADAYCCKDWRNRFEVA 223
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BLAST of mRNA_Ecto-sp9_F_contig93.17458.1 vs.
Match: Malignant (fibrous histiocytoma-amplified sequence 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQ10_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.580e-5
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3 
Query:  339 SCSCSEGNPCAVAYHCRDWPNRFEVAAAA 425
            SCSC EGNPCAV Y+C+DW NR E+A  A
Sbjct:  143 SCSCIEGNPCAVPYNCKDWENRIEIARRA 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig93.17458.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Hypothetical1.260e-664.86protein n=1 Tax=Haptolina brevifila TaxID=156173 R... [more]
Uncharacterized6.560e-674.19protein n=1 Tax=Chrysochromulina tobinii TaxID=146... [more]
Malignant3.580e-568.97fibrous histiocytoma-amplified sequence 1 n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig93contigEcto-sp9_F_contig93:25171..26668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size551
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931007.3797357-CDS-Ecto-sp9_F_contig93:25170..254161622931007.3797357-CDS-Ecto-sp9_F_contig93:25170..25416Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 25171..25416 -
1692278990.2728956-CDS-Ecto-sp9_F_contig93:25170..254161692278990.2728956-CDS-Ecto-sp9_F_contig93:25170..25416Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 25171..25416 -
1622931007.3955758-CDS-Ecto-sp9_F_contig93:26365..266681622931007.3955758-CDS-Ecto-sp9_F_contig93:26365..26668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 26366..26668 -
1692278990.2809398-CDS-Ecto-sp9_F_contig93:26365..266681692278990.2809398-CDS-Ecto-sp9_F_contig93:26365..26668Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 26366..26668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig93.17458.1prot_Ecto-sp9_F_contig93.17458.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig93 25171..26668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig93.17458.1

>prot_Ecto-sp9_F_contig93.17458.1 ID=prot_Ecto-sp9_F_contig93.17458.1|Name=mRNA_Ecto-sp9_F_contig93.17458.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=183bp
MCGTRLKQLDVSAADEPEAAQAVATVARVPASSSLTSPLHVLTSLVDLNL
ANNELGSQNGDGRRVLETFTKAGFPRLVSLDVRNSFPAEGELQDELLRIT
TGSSALRRGEGKRAAAARKETHARWRTTAVTGRTDLRLLRLLLRLLEEGV
AASRDRHIIIVSFKAMTEPDNGSTSMRYVQWKE
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mRNA from alignment at Ecto-sp9_F_contig93:25171..26668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig93.17458.1 ID=mRNA_Ecto-sp9_F_contig93.17458.1|Name=mRNA_Ecto-sp9_F_contig93.17458.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1498bp|location=Sequence derived from alignment at Ecto-sp9_F_contig93:25171..26668- (Ectocarpus species9 EcSCA_722f female)
ATGTGTGGCACCAGGCTAAAGCAACTGGACGTCTCCGCAGCAGACGAGCC
CGAAGCCGCGCAAGCGGTCGCAACGGTTGCGAGGGTCCCTGCTAGCAGCA
GCCTGACGAGCCCCCTCCACGTCCTGACGTCCCTGGTCGACCTCAACCTT
GCCAACAACGAGCTTGGTTCTCAAAACGGAGACGGTCGTCGTGTGCTGGA
GACGTTTACGAAAGCGGGGTTCCCTCGTCTGGTAAGCCTTGACGTGAGGA
ACAGCTTTCCTGCCGAGGGCGAGCTCCAAGACGAGCTTCTGAGAATAACC
ACGGTGAGATACCGGTGCCATACCAGCAACCCGGAGATGCCCTGCCCTGG
AAGAAGAGTTACTTCGAAACCAGGAACTCAATTCAATCCTCACTGCGTTG
CTGCACGGGGGGGGGGCGCAGTCAACGGTCACAAAACAGTCTCCTCCCAT
CACGTGAATCGTTATATTTCAAACGACGTTGTACCCCTCTGTGATGGGGA
AGGTGTCCACAGAGGGGTCGTCTGTCGTATGAAAGCCCGATAAGAGATTG
GTTCGAAACCTCATCTTCGTTGTAACTGTCGCCCCTACCCATCATCGTCG
GAGTAGTCCAGGAACTTGGACACACCGCCAGCGGATTAACGGTAAATTGC
AGGTGGCAGACGACGTACCCGCGACAACAAGCGCTTGACGTTGAGACGTG
TCTCTTCGCTCCCTTTTCCGATTTCGAACTTGCCTTGTTTATGTGCGATG
CGTGGTGTAGCGCTTGCAAACCCTCAAAACCCTGAATAGCGAAGAGGTGT
CAAGAACGGCGATGGTGCATTCCTCGAAACAGCCCATGTTCGAGCTTCTC
TCCACGGGTAAGAGCGTTTCCAAACATCATCCGTTTACCGGTCAGAAACG
GCTTCGGTGAAGGGCTGAACAGACCTACCACTGCTGTATAACGCTACCGA
AAACAACGCGGGGACATGTTTCCAATGGCCACTAAAAGGCGTAACCCCGA
TGCTAGCGCTACTACTGCTGACGGCATAAAAATAAATAGAGAAATCCAAG
GCACCAACTACAACAACTCCCTCAGCAGCTTGTCCATTGTGGTAGACACG
CGGCAGAAAAACGGATTCGTTGGGGGTTCATCATGTATCAGATAGTGCAT
TCCAATCTTGTTGTTCGTCGTGTTTTTGATGTTGAGAGGCGAGATTGCGA
AGCCGGCCGGTGTCTTTCCGTCGTTCCCACCGAATCTTGCGCGCATCTAC
AGGGGAGCAGTGCGCTAAGGAGGGGAGAAGGGAAGAGAGCTGCAGCTGCT
CGGAAGGAAACCCATGCGCGGTGGCGTACCACTGCCGTGACTGGCCGAAC
AGATTTGAGGTTGCTGCGGCTGCTACTTCGGCTTCTCGAGGAGGGAGTAG
CAGCAAGCCGTGATCGACATATTATAATAGTGTCGTTCAAGGCGATGACC
GAGCCCGACAATGGTTCCACAAGCATGCGATATGTACAGTGGAAAGAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig93:25171..26668-

>mRNA_Ecto-sp9_F_contig93.17458.1 ID=mRNA_Ecto-sp9_F_contig93.17458.1|Name=mRNA_Ecto-sp9_F_contig93.17458.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1098bp|location=Sequence derived from alignment at Ecto-sp9_F_contig93:25171..26668- (Ectocarpus species9 EcSCA_722f female)
ATGTGTGGCACCAGGCTAAAGCAACTGGACGTCTCCGCAGCAGACGAGCC
CGAAGCCGCGCAAGCGGTCGCAACGGTTGCGAGGGTCCCTGCTAGCAGCA
GCCTGACGAGCCCCCTCCACGTCCTGACGTCCCTGGTCGACCTCAACCTT
GCCAACAACGAGCTTGGTTCTCAAAACGGAGACGGTCGTCGTGTGCTGGA
GACGTTTACGAAAGCGGGGTTCCCTCGTCTGGTAAGCCTTGACGTGAGGA
ACAGCTTTCCTGCCGAGGGCGAGCTCCAAGACGAGCTTCTGAGAATAACC
ACGATGTGTGGCACCAGGCTAAAGCAACTGGACGTCTCCGCAGCAGACGA
GCCCGAAGCCGCGCAAGCGGTCGCAACGGTTGCGAGGGTCCCTGCTAGCA
GCAGCCTGACGAGCCCCCTCCACGTCCTGACGTCCCTGGTCGACCTCAAC
CTTGCCAACAACGAGCTTGGTTCTCAAAACGGAGACGGTCGTCGTGTGCT
GGAGACGTTTACGAAAGCGGGGTTCCCTCGTCTGGTAAGCCTTGACGTGA
GGAACAGCTTTCCTGCCGAGGGCGAGCTCCAAGACGAGCTTCTGAGAATA
ACCACGGGGAGCAGTGCGCTAAGGAGGGGAGAAGGGAAGAGAGCTGCAGC
TGCTCGGAAGGAAACCCATGCGCGGTGGCGTACCACTGCCGTGACTGGCC
GAACAGATTTGAGGTTGCTGCGGCTGCTACTTCGGCTTCTCGAGGAGGGA
GTAGCAGCAAGCCGTGATCGACATATTATAATAGTGTCGTTCAAGGCGAT
GACCGAGCCCGACAATGGTTCCACAAGCATGCGATATGTACAGTGGAAAG
AAGGGAGCAGTGCGCTAAGGAGGGGAGAAGGGAAGAGAGCTGCAGCTGCT
CGGAAGGAAACCCATGCGCGGTGGCGTACCACTGCCGTGACTGGCCGAAC
AGATTTGAGGTTGCTGCGGCTGCTACTTCGGCTTCTCGAGGAGGGAGTAG
CAGCAAGCCGTGATCGACATATTATAATAGTGTCGTTCAAGGCGATGACC
GAGCCCGACAATGGTTCCACAAGCATGCGATATGTACAGTGGAAAGAA
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