mRNA_Ecto-sp9_F_contig93.17455.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig93.17455.1
Unique NamemRNA_Ecto-sp9_F_contig93.17455.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig93.17455.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG89_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.600e-79
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 2 
Query:  176 CARVCIGLSVPGIIFLIIIGIMFDKQGFYTSVEVDDPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLGGEDSGYGSLTYLSQMPLMPQGYSRSDNYVDG 538
            CARVCIGLS+PGIIFLIIIGIMFDKQGFYTSVEVDDPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLG EDSGYGSLTYLSQMPLMPQGYSRSDNYVDG
Sbjct:    7 CARVCIGLSIPGIIFLIIIGIMFDKQGFYTSVEVDDPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGMLVTTQEELAHGDESSGLLGREDSGYGSLTYLSQMPLMPQGYSRSDNYVDG 127
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BLAST of mRNA_Ecto-sp9_F_contig93.17455.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPM2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.980e-8
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 2 
Query:  176 CARVCIGLSVPGIIFLIIIGIMFDKQGFYTSVEVDDPTAAASECYFAALLYVVAIGVSLGGICYDKNR 379
            CA+ C   S  G++FLI+IGI+  K+  Y   ++D P  AAS+C+ AA +Y+  I +S+G +  DK R
Sbjct:   17 CAKCCAIFSSTGVVFLILIGIILQKEPLYVR-DIDQPKKAASQCFGAAGIYIACIVISIGVLVSDKVR 83
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BLAST of mRNA_Ecto-sp9_F_contig93.17455.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCG9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.910e-7
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:  176 CARVCIGLSVPGIIFLIIIGIMFDKQGFYTSVEV---DDPTAAASECYFAALLYVVAIGVSLGGICYDKNR 379
            C++ C  LS  GI+FL I+GI+F++Q F+T+ EV   D    AA   Y+ A +Y + + +SL G+ Y K R
Sbjct:    7 CSQCCCLLSGMGIVFLTILGILFEEQPFFTNPEVYHKDGSEEAAEAVYWGAFIYFITLLMSLYGMWYSKRR 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig93.17455.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.600e-7998.35protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG89... [more]
Hypothetical9.980e-841.18protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 ... [more]
Uncharacterized6.910e-740.85protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig93contigEcto-sp9_F_contig93:5005..9008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_004170.1
Exons5
Model size609
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.8743882-UTR-Ecto-sp9_F_contig93:5004..50601622931006.8743882-UTR-Ecto-sp9_F_contig93:5004..5060Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig93 5005..5060 +
1692278990.0132983-UTR-Ecto-sp9_F_contig93:5004..50601692278990.0132983-UTR-Ecto-sp9_F_contig93:5004..5060Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig93 5005..5060 +
1622931006.8911457-UTR-Ecto-sp9_F_contig93:5566..56861622931006.8911457-UTR-Ecto-sp9_F_contig93:5566..5686Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig93 5567..5686 +
1692278990.0241306-UTR-Ecto-sp9_F_contig93:5566..56861692278990.0241306-UTR-Ecto-sp9_F_contig93:5566..5686Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig93 5567..5686 +
1622931006.9036603-UTR-Ecto-sp9_F_contig93:7020..70821622931006.9036603-UTR-Ecto-sp9_F_contig93:7020..7082Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig93 7021..7082 +
1692278990.035246-UTR-Ecto-sp9_F_contig93:7020..70821692278990.035246-UTR-Ecto-sp9_F_contig93:7020..7082Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig93 7021..7082 +
1622931006.9878836-UTR-Ecto-sp9_F_contig93:8940..90081622931006.9878836-UTR-Ecto-sp9_F_contig93:8940..9008Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig93 8941..9008 +
1692278990.09138-UTR-Ecto-sp9_F_contig93:8940..90081692278990.09138-UTR-Ecto-sp9_F_contig93:8940..9008Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig93 8941..9008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.9227083-CDS-Ecto-sp9_F_contig93:7082..71611622931006.9227083-CDS-Ecto-sp9_F_contig93:7082..7161Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 7083..7161 +
1692278990.0453618-CDS-Ecto-sp9_F_contig93:7082..71611692278990.0453618-CDS-Ecto-sp9_F_contig93:7082..7161Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 7083..7161 +
1622931006.9453578-CDS-Ecto-sp9_F_contig93:8053..81391622931006.9453578-CDS-Ecto-sp9_F_contig93:8053..8139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 8054..8139 +
1692278990.0639832-CDS-Ecto-sp9_F_contig93:8053..81391692278990.0639832-CDS-Ecto-sp9_F_contig93:8053..8139Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 8054..8139 +
1622931006.9678142-CDS-Ecto-sp9_F_contig93:8802..89401622931006.9678142-CDS-Ecto-sp9_F_contig93:8802..8940Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 8803..8940 +
1692278990.0791433-CDS-Ecto-sp9_F_contig93:8802..89401692278990.0791433-CDS-Ecto-sp9_F_contig93:8802..8940Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig93 8803..8940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig93.17455.1prot_Ecto-sp9_F_contig93.17455.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig93 7083..8940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig93.17455.1

>prot_Ecto-sp9_F_contig93.17455.1 ID=prot_Ecto-sp9_F_contig93.17455.1|Name=mRNA_Ecto-sp9_F_contig93.17455.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=101bp
MFDKQGFYTSVEVDDPTAAASECYFAALLYVVAIGVSLGGICYDKNRRGM
LVTTQEELAHGDESSGLLGGEDSGYGSLTYLSQMPLMPQGYSRSDNYVDG
*
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mRNA from alignment at Ecto-sp9_F_contig93:5005..9008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig93.17455.1 ID=mRNA_Ecto-sp9_F_contig93.17455.1|Name=mRNA_Ecto-sp9_F_contig93.17455.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4004bp|location=Sequence derived from alignment at Ecto-sp9_F_contig93:5005..9008+ (Ectocarpus species9 EcSCA_722f female)
GGGCGAAGCAAAAGCGAGGGGGAGAGCCAAGTTTAGGATGGCCGGAATCG
ACTGCTGTGAGTACAGGGCTATAACTGAGGAGGAAGTGCCGCCAGCAATG
GATTGCCACACCGCCCGCATCTGCTGTGCTGTGATTGCTATGCGCAGATA
GCACTTTGATTGTTCCGCCTCTGTTGCCGTTCGGCGATCAACACCCTCGC
TACCGCACGAGAGGAGACTATGTTACCAACACCGAGTACCTCCCTCCGGG
TCGTGTGTCGACATGTCACCCGCGATAGCAGGATCAGCAAGCCGTGGTGG
CGTGTTTTTTTTTCATTGAGATATGTATGCCTTTCTCCACGAGCAATGTC
ACGGCTTTGTTTCGAGTCTCGAACGAGGTCTCCGCACGACGCACGACACG
CGCCTGAGGGTAGCGCAAAATTTGGGTATTGGCGTGACGCCTGTGCACTA
GCGGTGCTCATTCATGATTTGTTTTGCAGACGGAGCCGCGAACGCATTTT
TCACAGCGGTGCCCCTCCCCCCGTCGCAACCAATACTCTCTCCGTGTGTT
GGAAAATTCCAGCGTGAAGTTCGAAAACCTCCCGTCATGTGTGGGCACTC
TGTAGCTCGTGTGTTCCGAACAAGCTTTGCCCATGCCCTCGCCACACAGC
TGCAGTAAAGGAGAGGAAACGCTACCAACATTGTAAGGACTTGTCGCGTC
CAATACATGTGGTATGTCGACCTATGTATGCAGGCTTTTTATAGCCTTTT
GCGTCAAAACATGCATGAGTTCTAAATACAGCATCACACAATAGAGGTTT
GCCGAAGCAGCAGTGTGTTGCGGAGCTGTTTGAGCTTTTCGATATTCGGA
CGGTTGGGGCACTACCGTGTGCTCGTCGAAGATCACCTGGCACATTCGCC
AAGACCACGAAACAATCGATGGAAACAAATTCACAGCGGGGCATACTCAA
GCACTCCTTTAAATTCAAATGTCTCATGACAACACATGGATTGCTCTACC
ACAGCCCACATGCTGGACCGTGAGATTAGCAGCATTCAGTCAGTGAGGTT
TGCTGCCAGTTTTTACCAGACGCCTCCTTAAGTAGGAAAACTGTGCTGAC
CATAGCCCAAGCTTGGAAATAAAACCCTCCCAATAATCCATGTCCTGTTT
TCTAGCCAAGCACACACTATGCGCGGCGTTGTTTTGGTTCTCGCTTGGTT
CTGTGTTTTTCAGCGGGTCTTGTGGTGATGATCTGTAGTCGGAGGCTCAA
ACACTGTTGATGGCGGACAAGAGGGGCTCGCGAAACATTGGATCAGCGGC
CATCCGCGTGCATCCGCGCATTCGCCCGCCTGTGGGACCAAAAATCTAGT
CCTGGACGCACTCAAGTATCTCCCACGCCAGGCAATTCTGGTCCTCCCGA
GTTCACGGCCAACAATCATAGGCCTTACATTTCTCGGCCTCTTTCGGATA
CAGCAGAACGTGTGCTGGTCCACGAAGTTTCAGACACAGCGTAACTACGT
CGCATGTAGATGTTTTTTTAGGCCCGAGATGTCTTTTGAATGTGTCCGTT
ACTTCCCACGTCCAGTTTGCGAGCGCTCTCCGCCATTATTGTCGGCACAT
TGTGTCTCTTTCGACAACGCGATGTTTCTAGAAAACAGAGATACAGTCAC
AGACCGACTGCCCTTTTGAGATACATCCACAGCAGCGAAGGGGTCTTGAA
TGAAGTCTTTGCAGCGAGTGGGAAGAAAACAACTCGACGTTTCGTTCAAC
CTCTCTCTGTACTCGTACGCCGATAGAAGGAGCGACGAGACCCCCGCTAC
CTCGCAGACAAGTCAGCGCATGGTAGTGCAAAAAAAAAGAATCACAAGTC
AACATGAACCATGGTATCAACAACAGCTATCATACTACATAGCAGAAATC
AGCATGAACTTTGACAACAGCAATCATAAGCAGCTACGGCAATACGAGTG
TAACCCCCTACAGGTGTTGCTCAACTTCTAACTAACCACCATCACCACCA
CCCCGTCTGTTTTCAGGCGCGAGGGTATGTATCGGGTTGTCCGTCCCGGG
CATCATTTTCCTCATCATTATCGGTATCATGTTCGACAAGCAGGGCTTCT
ATACCTCGGTAGAGGTCGACGATCCCACTGCGGCGGCGTCTGAGTGTTAT
TTTGCAGGTGAGATGGAAAGAGGGATGTTGGATCTTGTGCGTCGAAGAGT
TTTGCCACGGCCCCTCCCTTCTGACTGTAAACTGACAGACGGAAGGAGGA
TGGATGTTTTGTGTCGAAGAGTTTTGGGTTAGAGTTAGGGTTAGAATTTT
GCCACGGCGCTTCTCCTCTGGCTGTAGACTGGCACACGGAAGGAGGGATT
TCTTGTGCCAAAGACTTCCAAGAATTGCCCATGACCCCTCTCTGCTCTGA
CCGTGAACTGCCACAGAAAATCCCCTCTGCATCCCACCCCTACGAGTTGC
TGCTGCTGTTGCTGCTGCTGCCATCGAATACTAGATAAGAGGCTCATCCG
CTTTCCTTCTTGACGTGGGCACAGGGGTGATGGCCCTGCCTTTCAAGTTC
GGGGGCTTCTTTGCCTCTCACGAGCAACGATTACGATTTGGTGATGTAGT
GCTTAGGTGCTTAGTCAGCATACATGATGAGCTTTTGGCTTGGTTTGATG
ACGGCCTCCCCTCTTCCGACCTCTCTCTCTCTGTCTCTCTCTCTCTGTCT
CTCTCTCTCTGTCTCTCTCTCTCTTACCCTTTCTCTGTCTGTCTGTCTGT
CTCTCTGTCTCTCTGTCTCTTCCCTCTGTCCCTGTCTCTCTGTCTCTCTG
TCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTGTCTGTCTGTCTGCC
TGTCTGCCTGTCTGTCTGTCTGTCTGCCTGTCTGCCTGTCTGTCTGCCTG
TCTCTCTCTTCTCTCCCTGTCTGCCTGTCTCTCTCTTCTCTCCCTGTCTG
TCTCTGTCTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTTCTTGTCTGTCTGTCTCTGTGTGTATCAGC
GTTGCTGTACGTTGTTGCGATCGGGGTCTCACTCGGGGGCATCTGCTACG
ACAAGAACCGGCGAGGGATGTTGGTGACGACACAGGTTCGGCAATAGACC
TTTTCTTTCTGCGCCGGTTTTTGAGTTGCTGTTGGTTGCTGCTATCCTCC
CGGTGAAAGGGGAACAACCCGCGTCCACGCCCCACAATAACCCCCATAGA
AGAAAAACGGACGCATTGTGTAAGAATACGCACGCTGTACCTAACGTCCG
TATCGGTTTTGATGGTGTGGTTGTGGTACTTGTCGTTGTAGTTTTCAGTC
AATCTATCGCCTTTTGGGGGTTATAAGCCACATACACCTCTGGGGATGCG
TTTACCCTCGCCGTTCCATTTTTTTGTTTTTTTTTGTTTCATGTGTTCCG
AGTCGTGTTGGTGTGCTCATTTTCCCAAATGTAGATCCCAGTGCATCACG
ACCTGCCAGGTATGCAAAGCATCGTTTGTTGATAAGAAATTCATGTAGGG
AACAGGTGACGGCTTCGGGAATCACTCAAGGTATCGGTGTGTACCAAGTA
CGAGGGTTCTTGCTGTACCATCCGCCGATTTTTGTTGTTGTTGTCGACGA
CCCATCCCGGCTCGCCGCGTTCACCAACGGTTGCTCTCCCAGTGCTGCTG
TTCTACTAGTGACAGTTGTCGCGGAAAATGCCATCTTCTGTTCAGCGCCG
ACCCTCCTGTTTCCCCTTGCCCCGCGTGTGTTGTGCTCTCGTACACAGGA
GGAGCTTGCTCATGGAGACGAGAGCTCAGGTCTTCTGGGAGGGGAGGACT
CCGGTTACGGGTCGTTGACTTACCTTTCGCAGATGCCCTTGATGCCGCAG
GGCTACTCCCGAAGCGACAACTACGTAGATGGATGAGCGTACAGCAGTAG
TAGACGCAGACAGCAGGTTCGGTTTGTATTCGCAGGAGTTAGACATGCGA
TGCG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig93:5005..9008+

>mRNA_Ecto-sp9_F_contig93.17455.1 ID=mRNA_Ecto-sp9_F_contig93.17455.1|Name=mRNA_Ecto-sp9_F_contig93.17455.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp9_F_contig93:5005..9008+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCGACAAGCAGGGCTTCTATACCTCGGTAGAGGTCGACGATCCCAC
TGCGGCGGCGTCTGAGTGTTATTTTGCAGATGTTCGACAAGCAGGGCTTC
TATACCTCGGTAGAGGTCGACGATCCCACTGCGGCGGCGTCTGAGTGTTA
TTTTGCAGCGTTGCTGTACGTTGTTGCGATCGGGGTCTCACTCGGGGGCA
TCTGCTACGACAAGAACCGGCGAGGGATGTTGGTGACGACACAGCGTTGC
TGTACGTTGTTGCGATCGGGGTCTCACTCGGGGGCATCTGCTACGACAAG
AACCGGCGAGGGATGTTGGTGACGACACAGGAGGAGCTTGCTCATGGAGA
CGAGAGCTCAGGTCTTCTGGGAGGGGAGGACTCCGGTTACGGGTCGTTGA
CTTACCTTTCGCAGATGCCCTTGATGCCGCAGGGCTACTCCCGAAGCGAC
AACTACGTAGATGGATGAGAGGAGCTTGCTCATGGAGACGAGAGCTCAGG
TCTTCTGGGAGGGGAGGACTCCGGTTACGGGTCGTTGACTTACCTTTCGC
AGATGCCCTTGATGCCGCAGGGCTACTCCCGAAGCGACAACTACGTAGAT
GGATGA
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