mRNA_Ecto-sp9_F_contig928.17439.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig928.17439.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE) HSP 1 Score: 155 bits (391), Expect = 4.790e-42 Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = 1
Query: 1 DELLSFDDLVHDASALILTKPMWDAIMCCAHGYFDGRAVMGGGEALDLDGLVIVRLNSDGLLEPVDGSSTPIAEAKHLIF 240
DE LSFDDLVHDASALILTKPMWDAIM C+HGYFDGRAVMGGGEALDLDGLVIV+LNSDGLLEPVDGSSTPIAEAKHLIF
Sbjct: 53 DEPLSFDDLVHDASALILTKPMWDAIMRCSHGYFDGRAVMGGGEALDLDGLVIVQLNSDGLLEPVDGSSTPIAEAKHLIF 132
BLAST of mRNA_Ecto-sp9_F_contig928.17439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K159_9PHAE) HSP 1 Score: 145 bits (365), Expect = 3.360e-41 Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1
Query: 1 DELLSFDDLVHDASALILTKPMWDAIMCCAHGYFDGRAVMGGGEALDLDGLVIVRLNSDGLLEPVDGSSTPIAEAKHLIFF 243
DE+LSF+DLVH+A A ILTKPMWDA M C HGYFDGRA+MGGGEALDLDGLVIVRL+SDGLLEPVDGSSTPIA AKHLIFF
Sbjct: 117 DEILSFNDLVHNAEAPILTKPMWDAFMRCPHGYFDGRAMMGGGEALDLDGLVIVRLDSDGLLEPVDGSSTPIAAAKHLIFF 197
BLAST of mRNA_Ecto-sp9_F_contig928.17439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8U3_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.610e-40 Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 1
Query: 1 DELLSFDDLVHDASALILTKPMWDAIMCCAHGYFDGRAVMGGGEALDLDGLVIVRLNSDGLLEPVDGSSTPIAEAKHLIFF 243
+E+LSFDDLVH+AS+ ILTKPMWDAIM C HGYFDGRAVMGGGEALDLDGLVI +LN DGLLEPVDGS+TPIAEAKHLIFF
Sbjct: 131 EEILSFDDLVHNASSPILTKPMWDAIMRCPHGYFDGRAVMGGGEALDLDGLVIAQLNRDGLLEPVDGSTTPIAEAKHLIFF 211
BLAST of mRNA_Ecto-sp9_F_contig928.17439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X2_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 4.970e-23 Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 4 ELLSFDDLVHDASALILTKPMWDAIMCCAHGYFDGRAVMGGGEALDLDGLVIVRLNSDGLLEPVDGSSTPIAEAKHL 234
E+ F+DLV A IL+KPMWD IM C +GYFDGRA+M G +AL LDGL+IVR++S G L +DG +TP+AEAKHL
Sbjct: 95 EVHGFEDLVDSAERDILSKPMWDKIMRCPYGYFDGRAMMIGADALGLDGLLIVRVDSAGFLVAMDGMTTPVAEAKHL 171
BLAST of mRNA_Ecto-sp9_F_contig928.17439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Q9_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 6.840e-23 Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 4 ELLSFDDLVHDASALILTKPMWDAIMCCAHGYFDGRAVMGGGEALDLDGLVIVRLNSDGLLEPVDGSSTPIAEAKHL 234
E+ F+DLV A IL+KPMWD IM C +GYFDGRA+M G +AL LDGL+IVR++S G L +DG +TP+AEAKHL
Sbjct: 95 EVHGFEDLVDSAERDILSKPMWDKIMRCPYGYFDGRAMMIGADALGLDGLLIVRVDSAGFLVAMDGMTTPVAEAKHL 171
BLAST of mRNA_Ecto-sp9_F_contig928.17439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG6_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.710e-22 Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 4 ELLSFDDLVHDASALILTKPMWDAIMCCAHGYFDGRAVMGGGEALDLDGLVIVRLNSDGLLEPVDGSSTPIAEAKHLIFF 243
E+ F+DLV A IL+KPMWD IM C +GYFDGRA+M G +AL LDGL+IVR++S G L +DG +TP+AEAKHL+ +
Sbjct: 129 EVHGFEDLVDSAERDILSKPMWDKIMRCPYGYFDGRAMMIGADALGLDGLLIVRVDSAGFLVAMDGMTTPVAEAKHLVLW 208
BLAST of mRNA_Ecto-sp9_F_contig928.17439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN8_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 3.530e-8 Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 1 DELLSFDDLVHDASALILTKPMWDAIMCCAHGYFDGRAVMGGGEALDLDGLVIVRLNSDGLLEPVD 198
+EL FDD+V + +I+ + MW+ +M C G FDGRA + G+ L LDG+ IV+ + +G+L P D
Sbjct: 82 EELADFDDVVDNPMWVIMARGMWEKVMLCFRGQFDGRAFLLMGKVLPLDGIRIVK-HDNGILAPCD 146 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig928.17439.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig928.17439.1 >prot_Ecto-sp9_F_contig928.17439.1 ID=prot_Ecto-sp9_F_contig928.17439.1|Name=mRNA_Ecto-sp9_F_contig928.17439.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=82bp DELLSFDDLVHDASALILTKPMWDAIMCCAHGYFDGRAVMGGGEALDLDGback to top mRNA from alignment at Ecto-sp9_F_contig928:19718..19963+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig928.17439.1 ID=mRNA_Ecto-sp9_F_contig928.17439.1|Name=mRNA_Ecto-sp9_F_contig928.17439.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp9_F_contig928:19718..19963+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig928:19718..19963+ >mRNA_Ecto-sp9_F_contig928.17439.1 ID=mRNA_Ecto-sp9_F_contig928.17439.1|Name=mRNA_Ecto-sp9_F_contig928.17439.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp9_F_contig928:19718..19963+ (Ectocarpus species9 EcSCA_722f female)back to top |