mRNA_Ecto-sp9_F_contig928.17435.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig928.17435.1
Unique NamemRNA_Ecto-sp9_F_contig928.17435.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig928.17435.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD07_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 2.070e-30
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 2 
Query:  140 RGSKQRGKVFRGARRPSVLRRRGKLPTWMTVGVPMLSPRPPRRVPRLPPIPETGTKVRRG 319
            RGSKQRGKVFRGARRPSVLRRRGKLPTWMTVGVPMLSPRPPRRVPRLPPIPETGTK  RG
Sbjct:   49 RGSKQRGKVFRGARRPSVLRRRGKLPTWMTVGVPMLSPRPPRRVPRLPPIPETGTKPARG 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig928.17435.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.070e-3096.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig928contigEcto-sp9_F_contig928:5159..5614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_001810.1
Exons2
Model size328
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931004.5687373-CDS-Ecto-sp9_F_contig928:5158..53591622931004.5687373-CDS-Ecto-sp9_F_contig928:5158..5359Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig928 5159..5359 +
1692278989.0941653-CDS-Ecto-sp9_F_contig928:5158..53591692278989.0941653-CDS-Ecto-sp9_F_contig928:5158..5359Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig928 5159..5359 +
1622931004.6619372-CDS-Ecto-sp9_F_contig928:5488..56141622931004.6619372-CDS-Ecto-sp9_F_contig928:5488..5614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig928 5489..5614 +
1692278989.1046388-CDS-Ecto-sp9_F_contig928:5488..56141692278989.1046388-CDS-Ecto-sp9_F_contig928:5488..5614Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig928 5489..5614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig928.17435.1prot_Ecto-sp9_F_contig928.17435.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig928 5159..5614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig928.17435.1

>prot_Ecto-sp9_F_contig928.17435.1 ID=prot_Ecto-sp9_F_contig928.17435.1|Name=mRNA_Ecto-sp9_F_contig928.17435.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=109bp
MVAVTLSKSRRRKPPSKIRDSAVEEDSEEAVSRERYPVENENAPKGKGKQ
TARKSVPGSTSSLGAEKEGKAANVDDSGCADAISTASTASATSSADSRDG
DKGEAGIRT
back to top

mRNA from alignment at Ecto-sp9_F_contig928:5159..5614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig928.17435.1 ID=mRNA_Ecto-sp9_F_contig928.17435.1|Name=mRNA_Ecto-sp9_F_contig928.17435.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=456bp|location=Sequence derived from alignment at Ecto-sp9_F_contig928:5159..5614+ (Ectocarpus species9 EcSCA_722f female)
ATGGTAGCCGTGACCCTGTCAAAGTCGAGGAGGAGGAAGCCGCCTTCCAA
AATTCGCGACTCCGCCGTGGAAGAGGACAGTGAAGAAGCGGTGTCTCGTG
AGCGCTATCCGGTGGAGAACGAGAACGCGCCAAAGGGCAAGGGGAAGCAA
ACAGCGAGGAAAAGTGTTCCGGGGAGCACGTCGTCCCTCGGTGCTGAGAA
GGTGAGAGATTTCGCAAATGATGTGGTTCGGAAAGTTTGCGCCAAACTCC
ACATGTCTTGCCTAATGTTGCGGAGACCGTGCATGTGTCTTCCTAACCTA
TCACACATCACTTTCGTTTGAACCATATAGGAGGGGAAAGCTGCCAACGT
GGATGACAGTGGGTGTGCCGATGCTATCTCCACGGCCTCCACGGCGAGTG
CCACGTCTTCCGCCGATTCCCGAGACGGGGACAAAGGTGAGGCGGGGATC
AGGACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig928:5159..5614+

>mRNA_Ecto-sp9_F_contig928.17435.1 ID=mRNA_Ecto-sp9_F_contig928.17435.1|Name=mRNA_Ecto-sp9_F_contig928.17435.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp9_F_contig928:5159..5614+ (Ectocarpus species9 EcSCA_722f female)
ATGGTAGCCGTGACCCTGTCAAAGTCGAGGAGGAGGAAGCCGCCTTCCAA
AATTCGCGACTCCGCCGTGGAAGAGGACAGTGAAGAAGCGGTGTCTCGTG
AGCGCTATCCGGTGGAGAACGAGAACGCGCCAAAGGGCAAGGGGAAGCAA
ACAGCGAGGAAAAGTGTTCCGGGGAGCACGTCGTCCCTCGGTGCTGAGAA
GATGGTAGCCGTGACCCTGTCAAAGTCGAGGAGGAGGAAGCCGCCTTCCA
AAATTCGCGACTCCGCCGTGGAAGAGGACAGTGAAGAAGCGGTGTCTCGT
GAGCGCTATCCGGTGGAGAACGAGAACGCGCCAAAGGGCAAGGGGAAGCA
AACAGCGAGGAAAAGTGTTCCGGGGAGCACGTCGTCCCTCGGTGCTGAGA
AGGAGGGGAAAGCTGCCAACGTGGATGACAGTGGGTGTGCCGATGCTATC
TCCACGGCCTCCACGGCGAGTGCCACGTCTTCCGCCGATTCCCGAGACGG
GGACAAAGGTGAGGCGGGGATCAGGACGGAGGGGAAAGCTGCCAACGTGG
ATGACAGTGGGTGTGCCGATGCTATCTCCACGGCCTCCACGGCGAGTGCC
ACGTCTTCCGCCGATTCCCGAGACGGGGACAAAGGTGAGGCGGGGATCAG
GACG
back to top