mRNA_Ecto-sp9_F_contig9273.17433.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9273.17433.1
Unique NamemRNA_Ecto-sp9_F_contig9273.17433.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV7_ECTSI)

HSP 1 Score: 456 bits (1174), Expect = 7.640e-156
Identity = 283/299 (94.65%), Postives = 286/299 (95.65%), Query Frame = 1 
Query:    1 MSSKGLDALLALPSTSLLPRDGKDGAADASSTATLGDLRNAKATVYDFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDSGAARELVSQAASEGRWTSLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGRYGEGQQDENDAAAANAATPPGEETAAAGSPTAEGAPRGKATPSPRMECVGDVCKLVRKPKAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVECDGGVCKLVRKPKKAAEEQ 897
            MSSKGLDALLALPSTSLL RDGKDGAADASSTATLGDLRNAKATVYDFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDS AARELVSQAASEGRWTSLAH HLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGRYGEGQQDENDAAAANAA PPGEETAAAGSPTAEG PRGKATPSP MECVGDVCKLVRKPKAA  XXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXAGVECDGGVCKLVR+PKK AE++
Sbjct:    1 MSSKGLDALLALPSTSLLIRDGKDGAADASSTATLGDLRNAKATVYDFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDSSAARELVSQAASEGRWTSLAHVHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGRYGEGQQDENDAAAANAAAPPGEETAAAGSPTAEGGPRGKATPSPLMECVGDVCKLVRKPKAAXXXXXXXXXXXXXXTGETXXXXXXXXXXXXXXXXXXXXXXXAGVECDGGVCKLVRRPKKTAEQE 299
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK1_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 1.910e-81
Identity = 168/272 (61.76%), Postives = 173/272 (63.60%), Query Frame = 1 
Query:  301 SLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGRYGEGQQDENDAAAANAATPPGEETAAAGSPTAEGAPRGKATPSPRMECVGDVCKLVRKPKAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVECDGGVCKLVRKPKKAAE---------------------------------------------EQPAVSERKEEASESPLVVGDAMPSLQVGT 981
            SLAH HL EDEKERAKDILGMRTVPFYVVV EDG+VLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGRYGE QQDENDAAAANAATPPGEETAAAGSPTA+GAPRGKATPSPRMECVGDVCKLVR PKAAAAXXXXXX                                 AGV              + AE                                             EQP VS+RKEEASESPLVVGDAMPSLQVG+
Sbjct:    3 SLAHVHLAEDEKERAKDILGMRTVPFYVVVGEDGEVLRHGSAKTLPLKTVESLDSALLPPPAGAGSATAREGRYGESQQDENDAAAANAATPPGEETAAAGSPTAKGAPRGKATPSPRMECVGDVCKLVRNPKAAAAXXXXXXPHGQATGETAAPPAAPAPSP-------------AGVXXXXXXXXXXXXXTRTAEQESKDDSVADVAEASAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQPVVSDRKEEASESPLVVGDAMPSLQVGS 261
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZB1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.130e-22
Identity = 50/142 (35.21%), Postives = 87/142 (61.27%), Query Frame = 1 
Query:   34 LPSTSLLPRDGKDGAADASSTATLGDLRNAKATVYDFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDSGAARELVSQAASEGRWTSLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESL 459
            +P+ SLL    ++   +A  T+ + D  N K  V DFW+T C  CP  LD ++++A   P + F+A+NIDD  AA++++S     G+W ++ H  + EDEKE A + LG++ +P+Y +++EDG V++ G+ K +    + S+
Sbjct:    6 VPNLSLLHITSENCEDNAEQTSLI-DFLNGKPAVVDFWSTFCIKCPEGLDKMNALAAQHPDIMFIALNIDDFEAAQQIIS-----GKWENIHHFFITEDEKEIAMEELGLKKLPYYTIIAEDGIVIQTGTKKDIKFDELGSI 141
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Thioredoxin-like_fold (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z494_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.240e-21
Identity = 48/111 (43.24%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:  133 VYDFWTTRCTNCPAALDALDSIALG--RPSVTFVAVNIDDSGAARELVSQAASEGRWTSLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESL 459
            + DFWTTRCT CP+AL+ LD+ A     P++ F++VN+DD  AAR L +     G+WT++ H  ++E  +E  K+ LGM+ VPFYV+VS +G +L  G+ K +P++ +  L
Sbjct:   33 LLDFWTTRCTRCPSALNKLDAAAAAGATPNIAFISVNLDDFEAARALTA-----GKWTNMLHVAVDEGAREILKERLGMQAVPFYVLVSREGMILASGAPKDVPVEHLREL 138
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TV98_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 1.170e-19
Identity = 45/121 (37.19%), Postives = 73/121 (60.33%), Query Frame = 1 
Query:  103 LGDLRNAKATVYDFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDSGAARELVSQAASEGRWTSLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTVESLDS 465
            L  L   K T+ DFW+T C  CPAAL  L+ ++   P + FVA+NIDD   +  ++S+      W  + H + E+D+KE A + +G++ +P+Y+V+SEDG V++ G++K L    +  L S
Sbjct:   30 LLSLLAGKPTIVDFWSTFCKKCPAALTKLNELSQAHPEINFVAINIDDYEGSWNMISEREE---WQHITHVYAEDDQKEIAMEKVGLKFLPYYLVLSEDGTVIQAGNSKDLDFNDLPRLFS 147
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VHT6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.220e-19
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 1 
Query:   82 DASSTATLGDLRNAKATVYDFWTTRCTNCPAALDALDSIAL----GRPSVTFVAVNIDDS-GAARELVSQAASEGRWTSLAHAHL--EEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAK 429
            D +  +TL ++   K  V DFWTTRCT CPAALD L  +A+    G   VTF ++  D S   ARE++ + + E RW  + H        +KERAK + G ++VPFYV V  +G +   GS K
Sbjct:   18 DTAEESTLAEVFRGKNIVIDFWTTRCTRCPAALDKLQEMAMNDTYGEDDVTFASICCDASLDGAREILEEPSQERRWNKIQHYSFLFGLQDKERAKQLFGFQSVPFYVFVDSNGTITHKGSPK 140
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WXP7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.590e-18
Identity = 45/111 (40.54%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:  109 DLRNAKATVYDFWTTRCTNCPAALDALDSIALGRP--SVTFVAVNIDDSGAARELVSQAASEGRWTSLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTL 435
            D+   KAT+ DFWTT+C  CP+ALD LD +A       V FV++  D    AR ++ +   + RW  ++H  +E+++KE+AK  LG ++VPFYVVV EDG++ + G  + +
Sbjct:   36 DVVRGKATIIDFWTTKCVRCPSALDKLDRMAQEPKYSDVQFVSICCDKLDGARNIIEKD-EDLRWQHVSHFFMEQEDKEKAKQQLGFKSVPFYVVVDEDGEIQQMGGERKI 145
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNM6_FISSO)

HSP 1 Score: 87.8 bits (216), Expect = 4.110e-17
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:   82 DASSTATLGDLRNAKATVYDFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDSGAARELVSQAASEGRWTSLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGS 423
            D +      ++     TV DFWTTRCTNCP ALD L  +A    +V F ++  D    ARE++ +   + RW+S+ H  +E  +KE  K I G + VPFYVV+++  ++ ++G+
Sbjct:   14 DTAEETNTHEIARGHHTVIDFWTTRCTNCPDALDKLQHLAATSSNVRFASICCDSLDGAREIIGRH-DDMRWSSVHHYFMEHADKELCKQIFGFKKVPFYVVLNDRNEITQYGN 126
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FX37_PHATC)

HSP 1 Score: 86.7 bits (213), Expect = 2.330e-16
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:  139 DFWTTRCTNCPAALDALDSIALGR--PSVTFVAVNIDDSGAARELVSQAASEGRWTSLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSA 426
            DFWTTRCT CP ALD LD +A      +V FV++  D    ARE++ +  +E RW ++ H  +E   KE AK++LG   VPFYV+++E G+ ++ G+A
Sbjct:   65 DFWTTRCTRCPDALDKLDDLAAAPRFANVQFVSICCDKLDGAREIIEKE-TEPRWQNVDHYFMEHQYKEEAKNVLGFSAVPFYVMLNEKGETIQMGNA 161
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMH1_FISSO)

HSP 1 Score: 84.3 bits (207), Expect = 7.510e-16
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:  130 TVYDFWTTRCTNCPAALDALDSIALGRPSVTFVAVNIDDSGAARELVSQAASEGRWTSLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGS 423
            TV DFWTTRCTNCP AL+ L  +A    +V F ++  D    ARE++ +   + RW+S+ H  +E  +KE  K I G + VPFYVV++   ++ ++G+
Sbjct:   29 TVIDFWTTRCTNCPDALNKLQHLAATSSNVRFASICCDSLDGAREIIGRH-DDMRWSSVHHYFMEHVDKELCKHIFGFKQVPFYVVLNAQNEITQYGN 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9273.17433.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
Uncharacterized7.640e-15694.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.910e-8161.76protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical7.130e-2235.21protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Thioredoxin-like_fold3.240e-2143.24domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.170e-1937.19protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical8.220e-1940.65protein (Fragment) n=1 Tax=Grammatophora oceanica ... [more]
Hypothetical5.590e-1840.54protein (Fragment) n=1 Tax=Craspedostauros austral... [more]
Uncharacterized4.110e-1736.84protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]
Predicted2.330e-1643.88protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Uncharacterized7.510e-1640.82protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9273contigEcto-sp9_F_contig9273:1634..5271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score462.6
Seed ortholog evalue1.5e-127
Seed eggNOG ortholog2880.D7FSV7
EggNOG OGs2D0Q2@1,2SEYE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size993
Cds size993
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9273.17433.1prot_Ecto-sp9_F_contig9273.17433.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9273 1634..5271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931004.2095757-CDS-Ecto-sp9_F_contig9273:1633..17721622931004.2095757-CDS-Ecto-sp9_F_contig9273:1633..1772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9273 1634..1772 +
1692278988.9486365-CDS-Ecto-sp9_F_contig9273:1633..17721692278988.9486365-CDS-Ecto-sp9_F_contig9273:1633..1772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9273 1634..1772 +
1622931004.2280624-CDS-Ecto-sp9_F_contig9273:3264..34271622931004.2280624-CDS-Ecto-sp9_F_contig9273:3264..3427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9273 3265..3427 +
1692278988.9674304-CDS-Ecto-sp9_F_contig9273:3264..34271692278988.9674304-CDS-Ecto-sp9_F_contig9273:3264..3427Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9273 3265..3427 +
1622931004.2425096-CDS-Ecto-sp9_F_contig9273:3942..40361622931004.2425096-CDS-Ecto-sp9_F_contig9273:3942..4036Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9273 3943..4036 +
1692278988.9784389-CDS-Ecto-sp9_F_contig9273:3942..40361692278988.9784389-CDS-Ecto-sp9_F_contig9273:3942..4036Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9273 3943..4036 +
1622931004.2652476-CDS-Ecto-sp9_F_contig9273:4674..52711622931004.2652476-CDS-Ecto-sp9_F_contig9273:4674..5271Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9273 4675..5271 +
1692278988.9874835-CDS-Ecto-sp9_F_contig9273:4674..52711692278988.9874835-CDS-Ecto-sp9_F_contig9273:4674..5271Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9273 4675..5271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9273.17433.1

>prot_Ecto-sp9_F_contig9273.17433.1 ID=prot_Ecto-sp9_F_contig9273.17433.1|Name=mRNA_Ecto-sp9_F_contig9273.17433.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=331bp
MSSKGLDALLALPSTSLLPRDGKDGAADASSTATLGDLRNAKATVYDFWT
TRCTNCPAALDALDSIALGRPSVTFVAVNIDDSGAARELVSQAASEGRWT
SLAHAHLEEDEKERAKDILGMRTVPFYVVVSEDGKVLRHGSAKTLPLKTV
ESLDSALLPPPAGAGSATAREGRYGEGQQDENDAAAANAATPPGEETAAA
GSPTAEGAPRGKATPSPRMECVGDVCKLVRKPKAAAAAAAAAAAPQGQAT
GETAAEATVAATPGPAAAPAAPAPSPAGVECDGGVCKLVRKPKKAAEEQP
AVSERKEEASESPLVVGDAMPSLQVGTTVGG
back to top

mRNA from alignment at Ecto-sp9_F_contig9273:1634..5271+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9273.17433.1 ID=mRNA_Ecto-sp9_F_contig9273.17433.1|Name=mRNA_Ecto-sp9_F_contig9273.17433.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3638bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9273:1634..5271+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGTCGAAGGGACTCGATGCTTTGCTGGCACTCCCCAGCACCTCTCT
GCTGCCCCGTGATGGCAAGGATGGAGCAGCCGACGCGAGCTCTACCGCTA
CCCTTGGTGATCTTCGAAACGCTAAGGCTACGGTCTACGGTGAGGGCTCC
TAGCGAGGGTTTTGTTGAGCAGGTCTCGAACGCGAGGGAGCAACCAATTC
GCAATGGCCAACGGCCGCGACCAACACCGCACGACGGGGTGCCGCAGGGA
TAACTACAGCAGTAGACCGACGACTGCAGTGGTTGCTTGTGTCGAGCGAG
CGTGCAACAGGAACACTCAGCAGGAAACATGCGTTCTCCGGCTGTGAGAG
CTACTACAGAGCACCTGCACTCCCAAAAATCATCAGTAAACTCGTGTCGC
AACACCGGTATGCGTTAAGATATCACCCCCCCCCCCGCCTCCTCCTCTCG
GTGTAACGGAAACGGTATGGTGTAACGCGTACATAGCACATCCTTGCCAC
GGATTGGATTTTGGATTTCAGGTTTGGCCGATCCGTTCTCCCGTACACAC
CACTCTTTGCGATGTCCAAACTCACGTGCCCAACAGCGGCGGGAGTATTT
GTGCGCCTGGAAGGGGGTGCATGCATATCCTCTGAGGGGCTCTCGTGGTG
CAGACACAACAACGACGTTTGCCTACAAAGCTTTTTATGCATAGAAAGTA
AACATCTCACAGAAAGACTATTGTACCCGTTCGAGATACAACCTCAGTCG
AACGGGATGTGGTGAAGTCTTTTCAGTAAGTGAATAAAAAAAAAAAAAAT
TGAGACCCCCCACTGCAGCCATGTTCTCGCCCTCGCGCGTATCGGAAATA
GCGAAAACTCTCGACTGATGAACCCCGTGCATGTTCTCTCTCACCACGGA
AACAAGCAGAGCAAATTCACACGGATACACCTGTCTCTCGCAATACGGTG
TGGAACCCTGTCTCTCACAATACGGTGTGGAACCCTGTCTCTCGCAATAC
GGTGTGGAACCCTGTCCCGCCTTTGGGTGGATTCCGGCCCTCCCTTGAAC
CCTGAACGCTGCGTCATCTATTTCCCTCGAGTTTGTATATCTGCGAAGCT
GTTTCAACCCTTCCCCTTGGCACAGCAGTACCCCAACAACAGGTTTGCTC
CACAAAACGTTCGCCGATTCTGCATGGACGGGATGGACTGCTGTAATCCT
CACCCCCATCCCCCTCCATCAGAATTACAACCAGCGACACGGAAGACACC
ACAGCTCAGGAACAATAAAGAGGGTCATTGATCTCTACGTATGTGGGCAA
TAACCAATGGCAACGGTACTTGCTCTGTATACGGGCGCACGGCAGTTCGC
AATACTCATGACTGATGTTCCGCACCACAACGCACAGAACTTTCGTATTT
TTCGGCCGTCAAGCCTGTTCATCCCGCCCCCCCCCAGCCATTCCCGGGCC
TGGTCAGCGAGTCCCATGTGCTCCGATCGGGCTCGATGGCGATGTGAGCG
ACTTCCATGGTATAAGTATAACGGCATAATCATGAGCACACCCCCATTCT
CTCTATCTCTTTGTCTCTCTATCTATCCCTCCCCCTCTCCCTCTCTCTCC
CTCTCTCCTATCCCAAACAACGACATGGCAGACTTCTGGACAACCCGGTG
CACCAACTGCCCCGCGGCGCTGGACGCCCTGGACTCGATCGCCCTCGGGC
GACCCTCCGTGACCTTCGTGGCGGTGAACATCGACGACTCAGGCGCGGCG
CGCGAGCTCGTCTCGCAGGCCGCTTCCGAGGGCAGGTGGACCAGGTAAGG
AAAATGGCGCTTTTTCCCGTTGTTTCGCTGGGATGCGCGACCCGTCGACT
CTATCGCTACAATGAATAAGTGCAGTTGCCGCTGCGTGTATTCGGAGGGA
CGGAGGTGTAAAAAACGGGAATTTGTGTGCGGTATGCATACATGGGAACG
CGATTCAAGATGCAACGAGAGGGGCTAATTTTGTCCATCTGTATTTTGTT
GATCGGGAGGTGGACTTCTCCTCTCTGCGAGGCCTTCCCCGAATGCTGCT
GCCGTGATTCTGAGATCCTTCTCTTTGGAACGATGCTGAGATGGTTGCAC
GTACCTTGTTTTGTTTTTTTTTCGTTGTTGCCCACCACTACTACCACAAC
CGTGAGGCCAGGTGTAGAACACTTGAGAGGAGGGAAACACGGGTGAGAAT
GTTCCATGGTCACAATCCTCAAATACTAACGTGGTTCGTGCCCCGCGTCT
CGTTGTTTTCTGCCGCCGCCGCCGCCGCCGCCGTCTTGACACTTGTACAC
GATGAACAGCCTGGCCCACGCACACCTGGAGGAGGACGAGAAGGAGAGGG
CTAAGGACATCCTGGGCATGAGGACTGTGCCCTTTTACGTGGTCGTCAGC
GAGGTGCGGACATTTGGGGGCACTACATACAGCCCATGTTGCCGTATCCA
CGGCGTGAGAGATTTTGTACAGCATTTGGTGATTTCTACTGATGGTAGTT
AAGAAATCTTGTTGTTGGGAGGGGTGATGCGTGCAGCAGGTCGATGCTTC
CGCGCTGCTAAGGCAAGTATTTTAACATGGTGATGTATACATAAACTATG
TCACGGGAAAGCACGGCTAGCTAGGAGTGTTGACGAGATTAATTCGTAGT
GTTATCCCTGTTGCACCAAAGCGCGTGCTCTTGCTGCTGCACTGGGGCCA
CAGAAACCCACGGTAACACACGCTTCCTTTCCACCGGCTAGACTACCACC
CTGTGCGCACACTCCAATATATGTATGTCCGGAGTCCGTACCCCATTCGC
CACGTACATCACAACACGGACAAAAAACTTCACGAGGAGCTCTCAAGACT
GCTACATTCAGCTCCTGTTCACACGCTCGCCTCCCAGGTTGTGCCGGCAA
AAATCCTGGCACACCTCAACAACGTAGACGTGCTAGTACGCCCCAAGTCT
TAACGACACGGCCATGGCATGAATACCTTTCCTGGAGTGAACCCCGCTGC
CACTTCACCTCCCTCTCCCCCCTCTCCTGTCTCTGAAACAGGACGGGAAG
GTGCTCCGGCACGGTAGCGCCAAGACCCTTCCCCTCAAGACGGTCGAATC
CCTCGACTCCGCCCTGCTCCCGCCTCCTGCCGGTGCTGGTTCTGCTACCG
CTCGGGAGGGCCGCTACGGGGAGGGTCAGCAGGACGAGAACGACGCCGCG
GCCGCCAACGCCGCCACGCCACCGGGGGAGGAGACAGCAGCCGCTGGTAG
CCCTACCGCCGAAGGGGCCCCGCGAGGTAAAGCGACCCCTTCCCCCCGGA
TGGAGTGCGTCGGGGACGTGTGCAAGCTGGTCCGCAAGCCGAAGGCAGCA
GCGGCAGCAGCAGCAGCAGCGGCAGCACCGCAAGGACAAGCGACGGGAGA
AACGGCCGCCGAGGCAACGGTTGCTGCTACGCCTGGGCCCGCCGCCGCTC
CTGCCGCTCCTGCTCCCTCCCCTGCCGGTGTGGAGTGCGACGGCGGTGTG
TGCAAGCTGGTGCGCAAGCCGAAGAAGGCCGCGGAGGAACAACCGGCGGT
GTCGGAGAGGAAAGAGGAGGCAAGCGAGTCGCCGCTCGTCGTCGGCGACG
CCATGCCTTCCCTTCAGGTGGGCACTACGGTTGGGGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9273:1634..5271+

>mRNA_Ecto-sp9_F_contig9273.17433.1 ID=mRNA_Ecto-sp9_F_contig9273.17433.1|Name=mRNA_Ecto-sp9_F_contig9273.17433.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1986bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9273:1634..5271+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGTCGAAGGGACTCGATGCTTTGCTGGCACTCCCCAGCACCTCTCT
GCTGCCCCGTGATGGCAAGGATGGAGCAGCCGACGCGAGCTCTACCGCTA
CCCTTGGTGATCTTCGAAACGCTAAGGCTACGGTCTACGATGTCGTCGAA
GGGACTCGATGCTTTGCTGGCACTCCCCAGCACCTCTCTGCTGCCCCGTG
ATGGCAAGGATGGAGCAGCCGACGCGAGCTCTACCGCTACCCTTGGTGAT
CTTCGAAACGCTAAGGCTACGGTCTACGACTTCTGGACAACCCGGTGCAC
CAACTGCCCCGCGGCGCTGGACGCCCTGGACTCGATCGCCCTCGGGCGAC
CCTCCGTGACCTTCGTGGCGGTGAACATCGACGACTCAGGCGCGGCGCGC
GAGCTCGTCTCGCAGGCCGCTTCCGAGGGCAGGTGGACCAGACTTCTGGA
CAACCCGGTGCACCAACTGCCCCGCGGCGCTGGACGCCCTGGACTCGATC
GCCCTCGGGCGACCCTCCGTGACCTTCGTGGCGGTGAACATCGACGACTC
AGGCGCGGCGCGCGAGCTCGTCTCGCAGGCCGCTTCCGAGGGCAGGTGGA
CCAGCCTGGCCCACGCACACCTGGAGGAGGACGAGAAGGAGAGGGCTAAG
GACATCCTGGGCATGAGGACTGTGCCCTTTTACGTGGTCGTCAGCGAGCC
TGGCCCACGCACACCTGGAGGAGGACGAGAAGGAGAGGGCTAAGGACATC
CTGGGCATGAGGACTGTGCCCTTTTACGTGGTCGTCAGCGAGGACGGGAA
GGTGCTCCGGCACGGTAGCGCCAAGACCCTTCCCCTCAAGACGGTCGAAT
CCCTCGACTCCGCCCTGCTCCCGCCTCCTGCCGGTGCTGGTTCTGCTACC
GCTCGGGAGGGCCGCTACGGGGAGGGTCAGCAGGACGAGAACGACGCCGC
GGCCGCCAACGCCGCCACGCCACCGGGGGAGGAGACAGCAGCCGCTGGTA
GCCCTACCGCCGAAGGGGCCCCGCGAGGTAAAGCGACCCCTTCCCCCCGG
ATGGAGTGCGTCGGGGACGTGTGCAAGCTGGTCCGCAAGCCGAAGGCAGC
AGCGGCAGCAGCAGCAGCAGCGGCAGCACCGCAAGGACAAGCGACGGGAG
AAACGGCCGCCGAGGCAACGGTTGCTGCTACGCCTGGGCCCGCCGCCGCT
CCTGCCGCTCCTGCTCCCTCCCCTGCCGGTGTGGAGTGCGACGGCGGTGT
GTGCAAGCTGGTGCGCAAGCCGAAGAAGGCCGCGGAGGAACAACCGGCGG
TGTCGGAGAGGAAAGAGGAGGCAAGCGAGTCGCCGCTCGTCGTCGGCGAC
GCCATGCCTTCCCTTCAGGTGGGCACTACGGTTGGGGGTGACGGGAAGGT
GCTCCGGCACGGTAGCGCCAAGACCCTTCCCCTCAAGACGGTCGAATCCC
TCGACTCCGCCCTGCTCCCGCCTCCTGCCGGTGCTGGTTCTGCTACCGCT
CGGGAGGGCCGCTACGGGGAGGGTCAGCAGGACGAGAACGACGCCGCGGC
CGCCAACGCCGCCACGCCACCGGGGGAGGAGACAGCAGCCGCTGGTAGCC
CTACCGCCGAAGGGGCCCCGCGAGGTAAAGCGACCCCTTCCCCCCGGATG
GAGTGCGTCGGGGACGTGTGCAAGCTGGTCCGCAAGCCGAAGGCAGCAGC
GGCAGCAGCAGCAGCAGCGGCAGCACCGCAAGGACAAGCGACGGGAGAAA
CGGCCGCCGAGGCAACGGTTGCTGCTACGCCTGGGCCCGCCGCCGCTCCT
GCCGCTCCTGCTCCCTCCCCTGCCGGTGTGGAGTGCGACGGCGGTGTGTG
CAAGCTGGTGCGCAAGCCGAAGAAGGCCGCGGAGGAACAACCGGCGGTGT
CGGAGAGGAAAGAGGAGGCAAGCGAGTCGCCGCTCGTCGTCGGCGACGCC
ATGCCTTCCCTTCAGGTGGGCACTACGGTTGGGGGT
back to top