mRNA_Ecto-sp9_F_contig9261.17423.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9261.17423.1
Unique NamemRNA_Ecto-sp9_F_contig9261.17423.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: Cytochrome (b561 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD3_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 5.140e-145
Identity = 213/219 (97.26%), Postives = 216/219 (98.63%), Query Frame = 1 
Query:    1 ATKDDDYFLGGLAFSGTGLFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTNLYAGCRLSNGLGIVVIVTCLCATYAVMPRKPEQTATVLDAPLL 657
            A +DDDYFLGGLAFSGTGLFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMF AVILVSLGLIAVFQYHN+ELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTY AAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHY+NLYAGCRLSNGLGIVVIVTCLCATYAVMPRKPEQTATVLDAPLL
Sbjct:   29 ANQDDDYFLGGLAFSGTGLFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFTAVILVSLGLIAVFQYHNKELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYFAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYSNLYAGCRLSNGLGIVVIVTCLCATYAVMPRKPEQTATVLDAPLL 247
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVL7_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.980e-43
Identity = 83/179 (46.37%), Postives = 112/179 (62.57%), Query Frame = 1 
Query:   25 LGGLAFSGTGLFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTNLYAGCRLSNGL 561
            LGGL       F WHPVLMV G+V+ Y + +L+YR   L +  NK+IH      A   + +GL AVF+ HN+ L ANLY++HSW GI  V LF+  +V GF  F+ G+     K  YLP HV++G+ T+ +A  T   GI +K + LGCGY +T  EPDYNPASHY  + AGC+++N L
Sbjct:   95 LGGLYNGSASSFAWHPVLMVWGMVICYAEAMLSYRAFPLGKATNKIIHLVLQTLATFFICMGLYAVFKNHNDGLVANLYSLHSWLGIATVVLFFHQWVLGFAAFWLGAASPETKKAYLPVHVYLGVLTFFSAIITVESGITEKLAWLGCGYKVT--EPDYNPASHYDLIPAGCKVANWL 271
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V225_9STRA)

HSP 1 Score: 166 bits (419), Expect = 2.310e-42
Identity = 83/209 (39.71%), Postives = 119/209 (56.94%), Query Frame = 1 
Query:    7 KDDDYFLGGLAFSGTGLFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQW-MKAQYLPNHVFIGIFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTNLYAGCRLSNGLGIVVIVTCLCATYAVMPRKPEQT 630
              D   LGGL   G   F+WHPV MV GL++ +T+ +L+YR+  L +  NK+IH      A++ +  GL AVF+ HNE LYANLY+ HSW G+  + LF   +VGG   F + S P    K  YLP H+ +G+ TY+ A      G+ + ++   CGY ++   PD NPASH+  +  GC+ +N L I V+   LCA   V+   P+ T
Sbjct:   48 SSDSGGLGGL--QGGAPFSWHPVCMVFGLIICFTEAMLSYRSFPLGKAANKIIHLTLQTVAIVFLGTGLWAVFKAHNENLYANLYSSHSWLGLTTIVLFVPQWVGGLVAFVSKSAPSAEAKKAYLPLHILVGLLTYLCAVLAVETGLSENSAFSSCGYSVST--PDKNPASHWHLVSPGCKAANALAITVVALALCALATVIDIHPKDT 252
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBE7_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.090e-34
Identity = 73/203 (35.96%), Postives = 118/203 (58.13%), Query Frame = 1 
Query:   22 FLGGLAFSGTGLFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFAAVILVSLGLIAVFQYHN-------EELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTNLYAGCRLSNGLGIVVIVTCLCATYAVM 609
            +LGG+ +S   +FN+HPV+MV G+ +     +L+YR + L +++ K+ H      A++   +GL AV   HN        +  ANLY+MHS  GI  + L+++NY+  FF+F         +A + PNHVF+G+FT +AA      GI +  + LGC Y +T    D+NPA +Y  L  GC+L+NGLG+++++      YA++
Sbjct:   50 YLGGINWSKR-VFNYHPVMMVIGMNLCLITSLLSYRIIELPKKITKVFHAVTHAGAIVCALVGLSAVVTSHNYKDHNGNNKYTANLYSMHSLLGISALVLYFSNYILAFFHFLMPVVSNDARASFKPNHVFLGLFTLIAATIALETGITELTTKLGCIYPVT--SADWNPAENYHELSDGCKLANGLGVMILLGVFLCAYALL 249
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: probable (ascorbate-specific transmembrane electron transporter 1 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC7BD22)

HSP 1 Score: 124 bits (311), Expect = 2.580e-28
Identity = 64/155 (41.29%), Postives = 94/155 (60.65%), Query Frame = 1 
Query:   19 YFLGGLAFSGTG---LFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYVAAAFTTLLGIQDKNSALGCG 474
            +F GGLAF  T    +FN HPVLM+ G ++   + I++Y+ + L +EV K+IH    F A+IL  +G+ A F++HNE   ANLY++HSW GI V+ L+   ++ GF  FF  S    ++ Q LP HV  G+F Y+ A  T +LG  +K + L  G
Sbjct:   31 HFRGGLAFESTNKSLIFNIHPVLMLIGFIILGGEAIISYKAIPLSKEVKKVIHLTLHFIALILGIVGIYAAFKFHNESSIANLYSLHSWLGIGVICLYGIQWIFGFLMFFYPSGVAAIRVQSLPWHVLFGLFVYILALATAILGFMEKLTFLETG 185
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: Cytochrome (b561 domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7ING6_9ROSI)

HSP 1 Score: 123 bits (308), Expect = 6.840e-28
Identity = 61/148 (41.22%), Postives = 92/148 (62.16%), Query Frame = 1 
Query:   19 YFLGGLAFSGTG---LFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYVAAAFTTLLGIQDK 453
            YF GGLA+  T    +FN HPVLM+ GL++   + I++Y++L L ++V K+IH      A+IL  +G+ A F+YHNE    NLY++HSW GIV++ L+   ++ GF  FF    P  ++++ LP HVF G+F YV A     +G  +K
Sbjct:   31 YFRGGLAWKATNKSLIFNLHPVLMLIGLIIIGGEAIISYKSLPLTKQVKKIIHMILHAIALILGIVGICAAFKYHNESSIVNLYSLHSWLGIVIICLYGIQWIYGFVIFFYPGGPTEIRSESLPWHVFFGVFVYVLAVANAAIGFLEK 178
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: Cytochrome (b561 family member A3 n=2 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0LCN5_SPHPU)

HSP 1 Score: 123 bits (309), Expect = 1.550e-27
Identity = 79/217 (36.41%), Postives = 116/217 (53.46%), Query Frame = 1 
Query:   28 GGLAFSGTG-LFNWHPVLMVAGLVVAYTQGILAYR---TLSLEREVNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTNLYAGCRLSNGLGIVVIVTCLCATYAV-MP--RKPEQTATVLDAPLL 657
            GG A+ G+  +FNWHPVLMV GLVV Y    L YR   +    +   KM+H A   AA +L  LGL+AVF++HN+    N+Y++HSW G+  V LF   ++ GF +F     P W++A Y P HVF G      A   ++ GI +K         ++L  P     + Y+ L A    +N LG++++V  L   +A+ MP  ++PE  +     PLL
Sbjct:   69 GGFAWDGSAEMFNWHPVLMVTGLVVLYGTAALVYRVPRSWEGSKLPWKMLHAALTLAAFVLAVLGLVAVFEFHNKAGIPNMYSLHSWLGLATVLLFSCQWLVGFASFLLPWAPNWLRALYKPIHVFFGSAILPLAMAASISGINEK-------LFLSLKNP-----TPYSQLPAEAWFANILGMLILVFGLLVLWALAMPAWKRPEPDSQETQQPLL 273
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: cytochrome (b561-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E62A86)

HSP 1 Score: 122 bits (306), Expect = 1.810e-27
Identity = 71/189 (37.57%), Postives = 105/189 (55.56%), Query Frame = 1 
Query:   19 YFLGGLAFSGTGL-FNWHPVLMVAGLVVAYTQGILAYRTLSLERE-VNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTNLYAGCRLSNGLGIVVIV 579
            ++LGG A+ GTGL F++HP+ MV  LV  Y++ ++ +R    E + V K++H      A  +   GL AVF +HN   YANLY++HSW G+  V LF    + GF +F     P  ++A YL  HVF G+F ++ A  T L+GI ++ S L          P  NP   Y+ L A  ++ N LGI ++V
Sbjct:   40 HYLGGFAWDGTGLEFDYHPLCMVISLVFLYSEAMIVFRVFRRENKFVVKLVHFVLQLVAFAIAVWGLKAVFGFHNHMKYANLYSLHSWCGLTTVILFGCQVLFGFVSFLFPKLPGGLRAVYLKVHVFFGVFIFILAIGTCLMGITEELSFL----------PSSNP---YSKLPAPAQVGNTLGITLVV 215
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: Cytochrome (b561 family member A3 n=15 Tax=Durocryptodira TaxID=1579337 RepID=A0A452HVE2_9SAUR)

HSP 1 Score: 122 bits (305), Expect = 2.060e-27
Identity = 77/220 (35.00%), Postives = 116/220 (52.73%), Query Frame = 1 
Query:   19 YFLGGLAFSGTG-LFNWHPVLMVAGLVVAYTQGILAYRTLSL---EREVNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTNLYAGCRLSNGLGIVVIVTCLCATYAV-MP--RKPEQTATVLDAPLL 657
            ++ GG A+ G+  +FNWHPV MVAG++V Y   +L YR  S     +   K++H A   AA +LV LGL+AVF +HN++   N+Y++HSW G+  V LF   ++ GF  F    +P W++  Y P HVF G      A   ++ GI +K          +LT    N    Y  L      +N LG++++V  L   +A+ MP  ++PE  +     PLL
Sbjct:   30 HWRGGFAWDGSAKMFNWHPVFMVAGMLVLYGAAVLVYRVPSSWVGPKLPWKLLHAALTLAAFVLVVLGLVAVFGFHNDQGIPNMYSLHSWLGLAAVLLFSCQWLMGFATFLLPWSPAWLRIIYKPVHVFFGSTILALAMAASISGINEK-------LFFSLT----NKTVPYAKLPPEAWFANSLGMLILVFGLLVLWALAMPAWKRPESESLEARQPLL 238
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Match: cytochrome (b ascorbate-dependent protein 3 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FE711)

HSP 1 Score: 122 bits (305), Expect = 5.000e-27
Identity = 81/222 (36.49%), Postives = 122/222 (54.95%), Query Frame = 1 
Query:   19 YFLGGLAFSGTG-LFNWHPVLMVAGLVVAYTQGILAYRT-LSLE--REVNKMIHNACMFAAVILVSLGLIAVFQYHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIG--IFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTNLYAGCRLSNGLGIVVIVTCLCATYAVMP---RKPEQTATVLDAPLL 657
            ++LGG A+ G+  +FNWHPVLMV G++V Y    L YR  LS E  +   K++H A   AA ILV +GL+AVF++HN +   N+Y++HSW G+  V LF   ++ GF +F     P W++A Y P HVF G  I + V AA   L GI +K           L     N  + Y+ L +    +N LG++++V  L   +A+     ++P+  +  +  PLL
Sbjct:   63 HWLGGFAWDGSSEMFNWHPVLMVTGMLVLYGSAALVYRVPLSWEGPKLPWKLLHAALTLAAFILVVVGLVAVFEFHNNKKIPNMYSLHSWVGLTAVLLFSCQWLMGFASFLLPWAPIWLRALYKPIHVFFGSAILSLVMAA--CLSGINEK-----------LFFRLKNSTTLYSKLPSEAWFANILGMLILVYGLLVLWALAVSAWKRPDANSQGIQEPLL 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9261.17423.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cytochrome5.140e-14597.26b561 domain-containing protein n=2 Tax=Ectocarpus ... [more]
Hypothetical5.980e-4346.37protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Hypothetical2.310e-4239.71protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Hypothetical6.090e-3435.96protein n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
probable2.580e-2841.29ascorbate-specific transmembrane electron transpor... [more]
Cytochrome6.840e-2841.22b561 domain-containing protein n=1 Tax=Acer yangbi... [more]
Cytochrome1.550e-2736.41b561 family member A3 n=2 Tax=Sphenodon punctatus ... [more]
cytochrome1.810e-2737.57b561-like n=1 Tax=Orbicella faveolata TaxID=48498 ... [more]
Cytochrome2.060e-2735.00b561 family member A3 n=15 Tax=Durocryptodira TaxI... [more]
cytochrome5.000e-2736.49b ascorbate-dependent protein 3 n=1 Tax=Gekko japo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9261contigEcto-sp9_F_contig9261:69..5287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.8
Seed ortholog evalue2.4e-104
Seed eggNOG ortholog2880.D8LSD3
Preferred nameCYBRD1
KEGG rclassRC00467
KEGG koko:K01183,ko:K08360,ko:K08370,ko:K10706,ko:K16295,ko:K18749
KEGG TC5.B.2.1
KEGG ReactionR01206,R02334
KEGG Pathwayko00520,ko01100,ko04978,map00520,map01100,map04978
GOsGO:0000293,GO:0000323,GO:0001505,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005903,GO:0006091,GO:0006873,GO:0006875,GO:0006879,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010039,GO:0010646,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016491,GO:0016722,GO:0016723,GO:0019725,GO:0019904,GO:0022900,GO:0023051,GO:0030003,GO:0030133,GO:0030658,GO:0030659,GO:0031090,GO:0031224,GO:0031253,GO:0031410,GO:0031526,GO:0031902,GO:0031982,GO:0032501,GO:0032879,GO:0042221,GO:0042592,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0046916,GO:0046928,GO:0048167,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051049,GO:0051588,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060341,GO:0065007,GO:0065008,GO:0071944,GO:0097708,GO:0098588,GO:0098590,GO:0098771,GO:0098805,GO:0098852,GO:0098862,GO:0099177,GO:0120025,GO:0120038,GO:1903530
EggNOG free text desc.oxidation-reduction process
EggNOG OGsKOG1619@1,KOG1619@2759
EC1.16.5.1,3.2.1.14
COG Functional cat.U
CAZyGH18
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03019,ko03021
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionCytochrome b561/ferric reductase transmembrane
Ec32 orthologEc-21_003260.1
Exons5
Model size2860
Cds size582
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.3798451-UTR-Ecto-sp9_F_contig9261:68..22681622931002.3798451-UTR-Ecto-sp9_F_contig9261:68..2268Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9261 69..2268 -
1692278988.1567044-UTR-Ecto-sp9_F_contig9261:68..22681692278988.1567044-UTR-Ecto-sp9_F_contig9261:68..2268Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9261 69..2268 -
1622931002.49116-UTR-Ecto-sp9_F_contig9261:5209..52871622931002.49116-UTR-Ecto-sp9_F_contig9261:5209..5287Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9261 5210..5287 -
1692278988.2239912-UTR-Ecto-sp9_F_contig9261:5209..52871692278988.2239912-UTR-Ecto-sp9_F_contig9261:5209..5287Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9261 5210..5287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.4040725-CDS-Ecto-sp9_F_contig9261:2268..23661622931002.4040725-CDS-Ecto-sp9_F_contig9261:2268..2366Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 2269..2366 -
1692278988.176193-CDS-Ecto-sp9_F_contig9261:2268..23661692278988.176193-CDS-Ecto-sp9_F_contig9261:2268..2366Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 2269..2366 -
1622931002.4227953-CDS-Ecto-sp9_F_contig9261:2812..30141622931002.4227953-CDS-Ecto-sp9_F_contig9261:2812..3014Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 2813..3014 -
1692278988.1867025-CDS-Ecto-sp9_F_contig9261:2812..30141692278988.1867025-CDS-Ecto-sp9_F_contig9261:2812..3014Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 2813..3014 -
1622931002.4381757-CDS-Ecto-sp9_F_contig9261:3509..36411622931002.4381757-CDS-Ecto-sp9_F_contig9261:3509..3641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 3510..3641 -
1692278988.1968656-CDS-Ecto-sp9_F_contig9261:3509..36411692278988.1968656-CDS-Ecto-sp9_F_contig9261:3509..3641Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 3510..3641 -
1622931002.460487-CDS-Ecto-sp9_F_contig9261:3950..40661622931002.460487-CDS-Ecto-sp9_F_contig9261:3950..4066Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 3951..4066 -
1692278988.2052963-CDS-Ecto-sp9_F_contig9261:3950..40661692278988.2052963-CDS-Ecto-sp9_F_contig9261:3950..4066Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 3951..4066 -
1622931002.477106-CDS-Ecto-sp9_F_contig9261:5175..52091622931002.477106-CDS-Ecto-sp9_F_contig9261:5175..5209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 5176..5209 -
1692278988.214316-CDS-Ecto-sp9_F_contig9261:5175..52091692278988.214316-CDS-Ecto-sp9_F_contig9261:5175..5209Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9261 5176..5209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9261.17423.1prot_Ecto-sp9_F_contig9261.17423.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9261 2269..5209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9261.17423.1

>prot_Ecto-sp9_F_contig9261.17423.1 ID=prot_Ecto-sp9_F_contig9261.17423.1|Name=mRNA_Ecto-sp9_F_contig9261.17423.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=194bp
MVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFAAVILVSLGLIAVFQ
YHNEELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYL
PNHVFIGIFTYVAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYTN
LYAGCRLSNGLGIVVIVTCLCATYAVMPRKPEQTATVLDAPLL*
back to top

mRNA from alignment at Ecto-sp9_F_contig9261:69..5287-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9261.17423.1 ID=mRNA_Ecto-sp9_F_contig9261.17423.1|Name=mRNA_Ecto-sp9_F_contig9261.17423.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5219bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9261:69..5287- (Ectocarpus species9 EcSCA_722f female)
GCCACCAAGGACGACGACTACTTCCTCGGCGGTCTAGCGTTCAGCGGGAC
AGGGCTCTTCAACTGGCACCCGGTTCTGATGGTCGCTGGACTGGTCGTTG
CCTACACTCAAGGTTAGACGAGCCCTGTTTCGTTCTTTCTGTCAACAACA
AACAACGCAAACAAAGCGAGGTGCACGAGCCGATCGCCGTGGCACATGAA
TGAGCGCCACCCCTTGCCCCCTGCTCGCTTGCGACACAACGAGAGAGATA
CAGAACCTGCCCGCCAAACACGACCTAATCAGCTCTAGCGTAGGCACGAA
GGTTCTCGCGGTTGAGGTCTGTTCGAGAACCCTTGCTACTGCACTTTTCT
GGTGGTTGTCGGATACGTGCAGCGAAAATGTTGCCCGGGGGAGTAGGCAA
CGGGACACCACCGCGGTAACGAGGCGGCCTTCTCTAGGTTTCGCGCTGCG
GTCCGTTGTTCTTCGATGGGATGTTCGGTATGCAGCACACACAGGTCCAA
ACCACTCGTGACAGAGGTAGAACGGGATACGACGGGGGCTGTGAGGGAGT
GGACAGCCGGCCTGCTGTTTTTGTACTGGGGTTCGGCTTGTCCCACTGAT
TTTTTATCATCTGCGGCAACACCCCGACGGTAATCCCTCCGACATGTCAT
GCCGCATGTTACTATCGTTACGAGGCATTTAGTCGTGTGGGCCCTCTAAG
GCCTCGCGGTCGGCATGGGGCGGGTGAACTCTCTTGGCACACCTAGAACA
ATAACGCTGTTTTATTCTAACTCGGAGTACTCTGAATAGGGCGAATGCCT
GTTATAGTGCGGGTGTGTGTGACATGGCACTCTCTATAAGAGGACCCACG
AGAGACAGGAATCATGCCTTCATGTCCAAATGTGGTATGTATAATTTGAG
TTTATGCATAGATAGCACCAAACGCCAAGCTTGGTTTTGCCCCATGGTTT
GGTAGCCTCACCCAAAGACATAGGCCGGTCTTCTCGCGAGGTTGTTATTC
GATTGTTCTCAAGAGAGGGCTGGCAATCAGCCGTTCTCTCTCGACATGGG
TCATGGTACCCCGTTTGATCTCTGTCTGTCTGTCACCCCCCCCCCCCTCT
CTCTCTCTGTCGCTCTCGCTCTCGCTCTCGCTCTTTCTCGCTCTGTGCGT
GTCTCTTTCTCTCTCTATCTCTTCCTCTCTTGTTTCTCTCGCTCGCCCCT
CGTGTCACTCTGTCATTGAAGGTATCTTGGCGTACAGGACGCTGTCGTTG
GAAAGAGAAGTCAACAAAATGATCCACAACGCGTGCATGTTCGCGGCAGT
CATTCTCGTTTCACTCGGCCTGATCGCGGTTTTTCAGGTACGAGTGATCT
GCTTTACTTTCTACCGTTTCTTATGCCATTTGTTAACACAAGTGTTTCCT
TCCTACTGTGTGACCCCGATTGGCGCGTCAATCAAAGGTGTAGACTGGCG
CCCACAGTAGATGGGGAGTCACCACACACATGCAGGCATGCAGGCCTACG
CAAGACATTACCTCCAAATATAGGAAAAATAGAAACGTGGTATGTCGATA
ACGCAATCCGGGTGGCACTTCATGATCCGCACCTGTGTAGTATCGTCTAA
AGCCCCTCTTCCCCCACGCTCTCCCTCCGTCCGGTCCACTCGTCAGTACC
ACAATGAAGAGCTCTACGCGAACCTGTACACGATGCATAGTTGGGCGGGC
ATCGTGGTGGTCACACTGTTCTACGCCAACTACGTTGGTGGATTTTTCAA
CTTCTTCACTGGATCGACGCCGCAGTGGGTAAGGGGGACAAGCGACTGCT
CGAGTTGTTGTGAGATAAATTGTTTTGCTCTCATGAAGGGTGGCAGCAAG
TCAGCAAGTAGCCAGCAACACAAAAAAGCGGCGTTCGGGGGTCGAGATTC
GGGGTTGTTGGTACAACGGATAACGGATTTCGCCGTTCCAGCGCATGAAA
GACAGCGATTCTAGAACACCCAACGGCTTCGTGTGACAACGCTACCCCCC
CCGAGCGTGAACCCGGCAGACTACCGCATGCATCTTAAGCGGCACTCCTT
CTTGTGATTTGGCCTCCCACCAACCACCGCGCTCGTTGGGTGAGATCTGT
TGCCCAGTATGCTCCCTCCCGAGAACGTCTTGAGTTGTCTCTGAAGCCCC
GCCAAGCACGTCAAGGCGGCCGTTGTTATGACGCTGACCGCCCGCTTCGA
CATCGGAACGCCGTGCGTACGCTTCGTGCGGCCGTCCTGTACATCCACGT
TTCTGTCGACTGGTGTTTGGCAGATGAAGGCCCAGTACCTGCCAAACCAC
GTCTTCATCGGAATCTTCACCTATGTCGCGGCGGCATTCACGACGTTGCT
CGGGATCCAGGACAAGAATTCCGCGCTCGGCTGCGGCTACGACATCACGC
TCACGGAACCGGATTACAACCCGGCTTCCCATTACACCAACCTGTACGCG
GGCTGCCGTCTCAGCAACGGGCTAGGTGCGTGAAATATTTTTTCGATTTC
GTGCCTAGGCATGTTTCTAGTTGTTTCCATCATCCCACGACAAGGCATAA
CAGCTCTCTCTCTCTCTCTCTCTCTCTCTTACTCCCACTGCCGTCTCTCT
TTCTGTTCTGAATACTTACCAAAACCCAGTCGCTTCTGATGCGAATGCTG
TAGCGCTCGTGTCCACCGTATGCGTTTCTCTTGTGCCTCTCGATGGGTAT
GTTTCGTGAATTGCGCACCAGCAGACACAAGGACCGCCTTGGCATGTTAT
GTGATGTGGAACGCTCTGTTTCTCCCCAATTTGTTTTTCTTACCCACCAA
GACACGCCACCCCTTCCTACGTAGCATCGGCGAATCAAGTTCTAAACTCA
GTGCCCTGATACCGTGCCCGCCTGTGCCACGTTGTTTTTTTCTGCTTGAC
GTCGCGTCGTCTTCTAAATAGGTATCGTGGTCATCGTCACCTGCCTCTGC
GCCACATACGCTGTTATGCCTCGGAAACCCGAACAAACCGCTACGGTGCT
CGATGCCCCGCTTCTGTAAAGCCGCGTTTGTGTGAATTGTAGACAGCGAG
AAGCAAGCGCAATAACTAAAGGTTTTGGGTTGTGCCAACCTTTCTCCCCA
TGAAACACTACCTACCCCGCAGATTAAGTTTACTTTGCCTAGTGCGTTCA
TTGTATTTTGAACGATGGACCGAGAGACACATACTAAGTACAAAGACAGC
AGGAAGAGAGAGAGAAGGAGGGATTCTGCTGCGTGTGTGTTTCTTTCTGT
ACTGTGTTTTGCGGCGTGGTGTGTGCTTCCGATACAAAAGGCCGGAGTGC
AAACTGTCCAGGCCACTGCACAAATATCACACATCACAAATGTGTTGTAA
GTTGCTCGCGCCACCACACCCTCCCTGGGATTCATCCCACTTCGGCGTCT
GCTGTCACCGTCTGCCAGTTGTACTTGTATTTATTTGTCGTAGACGGTAG
GGTCTGACATTCGCATGAGTGTCCTAAGTTTCACAGCCGTCCCGTCGTAT
AGCGTGTGTGGTTGACGCGTATTGTATACTTTGTTTATGAACACAGGGAT
GAAATTAACCCCACGCTTTGGTATGGCGTCCAGAGGGAAAAAATTGTTGA
TGGTGTCGAAGAGCCAGCTGGTCGATGGCTTTTTTCATTTTGCGTGTGCT
AACTGTTCCTTGCTGTTATTTGTATGCTTGGTGGCACTTGATTGAAGCGG
TAGTTCTTGACTATCGTTGTGTGGGAGCGTGGAGATGAGCTTTGATACGG
GTCACATCTCCCCAACATCTGTCGGGGACGATGCCCTCTCTTCAGAAGGT
TGCTACGTATTTCCCTTCAATACTGTACATGCAGCAGGTTTTTCTGGCGT
GAATGACTGTCGGGAAATTGTGGTTGATGTTAAAGAGGATGCCATAGTCT
TGGGGCACAGAATGGGGCGTCCAAACCACAACATTGAGCGGCTGACGAGT
GTTGTGTCTGCAGGCAAACCTCCATTCTGGCGGGGCATATGTGTGTCTTC
GAAACGACCGTGTCTGGGGACCACCCCTTCCAACCACCGTTTCTCTGATC
GACGCGCTTCTTGAGACTGATGTTTTGGCGGAGGTGATGGTATGTATGAC
ATGATTGAAAACTTGGTTCGTTTTGTCGCGCGCCTGTACATCTCGCGTGG
AAAGCATGGAGTTGCACAAGGTGGGCAATCGCCACCGACCACAAAGAAGG
GAAGCGCGTTCACTCCTGGGCCAGCGTGTACAGCTCGCAACGGGCACGCA
CCGATCGACACCGGGGTTTGCCTACAAGCGCCAACGCGGGCACTGCAAAA
TAGGATCGTTTCGTAGACGTGTGTGCGGGAGCTTCGACCCGTTCTCGTAC
GCCCCACACGTGTACTCCCCCCCGTCTTATCTGGTAAATTCCCCCACAGC
AAGCCTTGGTTTCATCACCGGGGAGGTGTGATCCACGGGTGAAACGATGC
TGTTCTCGTGCACTTGAGGGACCGACTCGATTTAGCAAAGGGACGGCCTT
CTGCTCTTTGGACCGCTCATCGGACCTGTGCTGGCTTGCCGGTGGGAAAA
AACAAAGAAAATATTTTATGCCCCCCAGTGGGCGGTCAAGAAAAAAAGGA
AGCCGTGCTATCCGCCCCCGCCAGCCCTCCTGGTGAACGACACAGTGTTG
GAGCGGGCTAAGGGTGATTTTTTGCTAAAAAATGTTGTAGTAAGCGGTCG
TCCGGGCACATCTATCGCTAGTAACAAGTTGCGCTGCACGCGTACAAGGG
GCGCGCGTGTGAGGTGCAACGTGACCAAACACGGTCCTTGTAACCTTGTC
CAGAGAGCGCGTGGGATTGCCGCCTCCACGACCTTGGAAGCCTCTAGAGC
TATCCACCTTTGCATGACAACAACCGTCGCAACGCTGTGGGAGTGGCATA
CGTACGTCTCCCGCTGTCGCAAAGCGTGACGAGAGGACCATGCCGGCTGC
AGGTAAAATTTGTCTCTAGGAACAAGGATGCGTTTTGGTGTACCCGGATG
GCGCCATATGAAATTTTCTTGCTTCAGTCAGTAACATGTCCACGTCCCGG
TGGTCTAGTGGGTGTCCTTGCAGCCTTCTTGCGGCCAGGTCATGGGTTCG
AGTCCCGGCAAAGTGAGTTCTTTTTCTCACTAAATAAATCCTGGTCTAAA
TTGGCAGCGACACGCTGCTAAGCTCGTTGTTAGTAAACTAGATCGACTTC
ATAAGTCGCGAGGGAGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9261:69..5287-

>mRNA_Ecto-sp9_F_contig9261.17423.1 ID=mRNA_Ecto-sp9_F_contig9261.17423.1|Name=mRNA_Ecto-sp9_F_contig9261.17423.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9261:69..5287- (Ectocarpus species9 EcSCA_722f female)
ATGGTCGCTGGACTGGTCGTTGCCTACACTCAAGATGGTCGCTGGACTGG
TCGTTGCCTACACTCAAGGTATCTTGGCGTACAGGACGCTGTCGTTGGAA
AGAGAAGTCAACAAAATGATCCACAACGCGTGCATGTTCGCGGCAGTCAT
TCTCGTTTCACTCGGCCTGATCGCGGTTTTTCAGGTATCTTGGCGTACAG
GACGCTGTCGTTGGAAAGAGAAGTCAACAAAATGATCCACAACGCGTGCA
TGTTCGCGGCAGTCATTCTCGTTTCACTCGGCCTGATCGCGGTTTTTCAG
TACCACAATGAAGAGCTCTACGCGAACCTGTACACGATGCATAGTTGGGC
GGGCATCGTGGTGGTCACACTGTTCTACGCCAACTACGTTGGTGGATTTT
TCAACTTCTTCACTGGATCGACGCCGCAGTGGTACCACAATGAAGAGCTC
TACGCGAACCTGTACACGATGCATAGTTGGGCGGGCATCGTGGTGGTCAC
ACTGTTCTACGCCAACTACGTTGGTGGATTTTTCAACTTCTTCACTGGAT
CGACGCCGCAGTGGATGAAGGCCCAGTACCTGCCAAACCACGTCTTCATC
GGAATCTTCACCTATGTCGCGGCGGCATTCACGACGTTGCTCGGGATCCA
GGACAAGAATTCCGCGCTCGGCTGCGGCTACGACATCACGCTCACGGAAC
CGGATTACAACCCGGCTTCCCATTACACCAACCTGTACGCGGGCTGCCGT
CTCAGCAACGGGCTAGATGAAGGCCCAGTACCTGCCAAACCACGTCTTCA
TCGGAATCTTCACCTATGTCGCGGCGGCATTCACGACGTTGCTCGGGATC
CAGGACAAGAATTCCGCGCTCGGCTGCGGCTACGACATCACGCTCACGGA
ACCGGATTACAACCCGGCTTCCCATTACACCAACCTGTACGCGGGCTGCC
GTCTCAGCAACGGGCTAGGTATCGTGGTCATCGTCACCTGCCTCTGCGCC
ACATACGCTGTTATGCCTCGGAAACCCGAACAAACCGCTACGGTGCTCGA
TGCCCCGCTTCTGTAAGTATCGTGGTCATCGTCACCTGCCTCTGCGCCAC
ATACGCTGTTATGCCTCGGAAACCCGAACAAACCGCTACGGTGCTCGATG
CCCCGCTTCTGTAA
back to top