mRNA_Ecto-sp9_F_contig9259.17419.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9259.17419.1
Unique NamemRNA_Ecto-sp9_F_contig9259.17419.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9259.17419.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7N3_ECTSI)

HSP 1 Score: 446 bits (1147), Expect = 5.120e-154
Identity = 296/359 (82.45%), Postives = 300/359 (83.57%), Query Frame = 1 
Query:    1 QVHVDDENEEIYFAPVAEIGSGDSSSGDGVGGGEAXXXXXXXXXXXXXXXXXXXXXX---------TARYGCDPRNAWAPWGYAVVTVEGRTVLDVVPPTIAFSETLVTTRSDLDPFLHVEALTYDPGSGGIGGXXXXXXXXXXXXXXXXXXPEGSVGGGGGGQFLTFGLSSRNSAVVGSAFLVVGLLLLVQPVLALKAWXXXXXXXXXXXXXXXXXXXXANGGRSGRGGKLRGQWRYGQLETDWDDGSEFLDGGVYEGEDDDDDGWGSEGDWQGEKSSGVGMPPSPSEGDHFQASATPRLGRRFMQDSLRRRAADGGALGTXXXXXXXXXXT---RGDAGGIQLGPMGKSGRGEANLI 1041
            QVHVDD N EI FAPVAEIGSGDSSSG        XXXXXXXXXXXXXXXXXXXXXX         TARYGCDPRNAW+PWGYAVVTVEGRTVLDVVPPTI FS+TLVTTRSDLDPFLHVEALTYDP SGGIGG XXXXXXX          PEGSVGGGGGGQFLTFGLSS NSAVVGSAFLVVGLLLLVQPVLALKAW               XXXXX    RSGRGGKLRGQWRYGQLETDWDDGSEF+DGGVYEGEDDDDDGWGSEGDWQGE SSGVG PPSPSEG+HFQASATPRLGRRFMQDSLRRRAADGGALGTXXXXXXXXXX    RGDAGGIQLGPMGKSGRGEANLI
Sbjct:   14 QVHVDDNNGEISFAPVAEIGSGDSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETARYGCDPRNAWSPWGYAVVTVEGRTVLDVVPPTITFSKTLVTTRSDLDPFLHVEALTYDPSSGGIGGGXXXXXXXAEGASGEGISPEGSVGGGGGGQFLTFGLSSWNSAVVGSAFLVVGLLLLVQPVLALKAWWREGGVGSDEGGPTGXXXXXXXXXRSGRGGKLRGQWRYGQLETDWDDGSEFVDGGVYEGEDDDDDGWGSEGDWQGETSSGVGRPPSPSEGNHFQASATPRLGRRFMQDSLRRRAADGGALGTXXXXXXXXXXXXXIRGDAGGIQLGPMGKSGRGEANLI 372
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9259.17419.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized5.120e-15482.45protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7N3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9259contigEcto-sp9_F_contig9259:1521..4787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_001710.1
Exons4
Model size1044
Cds size1044
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9259.17419.1prot_Ecto-sp9_F_contig9259.17419.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9259 1521..4787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.4885876-CDS-Ecto-sp9_F_contig9259:1520..17521622931001.4885876-CDS-Ecto-sp9_F_contig9259:1520..1752Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9259 1521..1752 -
1692278987.7648592-CDS-Ecto-sp9_F_contig9259:1520..17521692278987.7648592-CDS-Ecto-sp9_F_contig9259:1520..1752Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9259 1521..1752 -
1622931001.5028954-CDS-Ecto-sp9_F_contig9259:2341..24461622931001.5028954-CDS-Ecto-sp9_F_contig9259:2341..2446Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9259 2342..2446 -
1692278987.773444-CDS-Ecto-sp9_F_contig9259:2341..24461692278987.773444-CDS-Ecto-sp9_F_contig9259:2341..2446Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9259 2342..2446 -
1622931001.53317-CDS-Ecto-sp9_F_contig9259:2958..34471622931001.53317-CDS-Ecto-sp9_F_contig9259:2958..3447Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9259 2959..3447 -
1692278987.7819817-CDS-Ecto-sp9_F_contig9259:2958..34471692278987.7819817-CDS-Ecto-sp9_F_contig9259:2958..3447Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9259 2959..3447 -
1622931001.5622513-CDS-Ecto-sp9_F_contig9259:4569..47871622931001.5622513-CDS-Ecto-sp9_F_contig9259:4569..4787Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9259 4570..4787 -
1692278987.7936926-CDS-Ecto-sp9_F_contig9259:4569..47871692278987.7936926-CDS-Ecto-sp9_F_contig9259:4569..4787Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9259 4570..4787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9259.17419.1

>prot_Ecto-sp9_F_contig9259.17419.1 ID=prot_Ecto-sp9_F_contig9259.17419.1|Name=mRNA_Ecto-sp9_F_contig9259.17419.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=348bp
QVHVDDENEEIYFAPVAEIGSGDSSSGDGVGGGEAGEQTEQTEQEEEEEE
EEEEEEETARYGCDPRNAWAPWGYAVVTVEGRTVLDVVPPTIAFSETLVT
TRSDLDPFLHVEALTYDPGSGGIGGGAAAGGGGAEGASGEGISPEGSVGG
GGGGQFLTFGLSSRNSAVVGSAFLVVGLLLLVQPVLALKAWWREGGGDSD
EGGPAGGGGGGANGGRSGRGGKLRGQWRYGQLETDWDDGSEFLDGGVYEG
EDDDDDGWGSEGDWQGEKSSGVGMPPSPSEGDHFQASATPRLGRRFMQDS
LRRRAADGGALGTGGGGGGGGGGTRGDAGGIQLGPMGKSGRGEANLI*
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mRNA from alignment at Ecto-sp9_F_contig9259:1521..4787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9259.17419.1 ID=mRNA_Ecto-sp9_F_contig9259.17419.1|Name=mRNA_Ecto-sp9_F_contig9259.17419.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3267bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9259:1521..4787- (Ectocarpus species9 EcSCA_722f female)
CAGGTGCATGTGGACGACGAAAACGAAGAAATTTATTTCGCCCCGGTGGC
AGAGATCGGAAGCGGCGACAGCAGTAGTGGGGATGGCGTGGGCGGGGGGG
AAGCCGGCGAGCAAACGGAGCAAACGGAGCAAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGACGGCACGATATGGCTGCGATCCTCGCAA
CGCTTGGGCTCCGTGGGGGTGAGCGATGGCGTGGGCGACCCCTTGCACGC
TTTAGCACCGTGGGTGACGTAAGATATCACGCCCCCTTGGCCGATTTTCA
AGGCTCGATTTCTCCACAGCAGAAAGATCGGCGGTGTCCAAATGGCGGCG
TGGGAACCTTGTCGTCGAGAACTCTCCGAAAACGTACCGTTTATAGACAA
AGTATCGTTTTAGAAAACGTATCGTTTATAGAAAACGTATCTATAAGCGC
ATTTGAAGTGAACACAAAAAAAAAAAAAAAATTATAGAAAACGTGTCGTT
TATAGAACGTTTATAGAAAACGTATCGTTTTAATTGTGCATCCTCTTGGA
CGTGGAGCAATCGAGCTTGAAAATTTCGGCCCAGAGGGTGTGATACCTTA
TGTCGCTTACGGAATCCGCATGTGACGCGGCTTGTACTGTTTACCGAAAG
TATGCGAGAGATGGCACCGGGTGCGATCAAAACATCAAAAATGTGGGTGT
TTTTTGCACACCCCGGTGCCATCCATCTCTCCGTAACTGGTGGCATCTCT
CCGAACCGTGCCATCTCTCGCATCCTTCCGGTAGTTGTTGCCGGAAAAAC
CCTTCCACCCCCACGTAGTTGGAGCACGGGGCGGCAGGCAGCAGGAGTTT
TTCGCGGGAGTGTTGTCGTTCGAGCTTGTACTTGGGGATTCCCGGCCATC
TGAGAAATTCCCGGGCGGGCTCTACCCCTTGCTTTAGTTTCTTCTGGTTG
GCTTGAGATACGGCGGTACGCACCCACAACTTCTGGCCTTTTGTTTTCGT
TTTTTGTTTGCTTGTGTTCCAACGGACCAGATGTTTCTCACGGCATATTA
TCAGGTGCTTGGTTCTTGTCGGATGCGAAGGTGGTTCATTCTGCGTACCC
CCCTGACGTTGAGGGCCCCTCGGAGAAGGGCTTTCGATTTTTTTTGAAGA
CTCTCTGATGGCTGCTCAATCTTCGAACGTGAAGTGCTGATAGGAGGTGC
TTCGTATGGTGATGCATGTACAGGAGGGTACGTAACCGCTGGCGTTGCAG
GAATGAATCAGATCAGCAGTCCCACGTATTTGTCTCCCTGTCTGCCAATC
TGATTCAATCTGCCTTCCACTATCAATAACAATGTCGTAGCTATGCGGTG
GTGACGGTGGAGGGCCGAACGGTGCTGGACGTGGTCCCGCCAACGATAGC
CTTCTCCGAGACGCTCGTCACCACGCGCTCGGACCTCGACCCCTTCCTCC
ACGTCGAGGCCTTGACCTACGACCCCGGCAGCGGGGGTATCGGCGGCGGA
GCCGCTGCAGGCGGCGGGGGAGCCGAAGGCGCTTCGGGGGAAGGAATCTC
GCCGGAAGGTAGCGTCGGCGGCGGGGGTGGGGGACAGTTCTTGACATTCG
GGCTGTCTAGCCGGAACTCGGCTGTGGTCGGATCGGCGTTTCTGGTGGTG
GGGCTGTTGCTCCTGGTGCAGCCGGTGCTGGCGCTCAAGGCGTGGTGGCG
AGAAGGCGGCGGCGACTCTGACGAGGGGGGCCCCGCCGGTGGTGGGGGAG
GTGGGGCTAACGGCGGGCGGAGCGGACGGGGCGGGAAGCTGCGGGGGCAG
TGGCGATACGGGCAGCTTGAGACCGATTGGTGAGAGTGCGTGTTGCCTCC
CGTTGGTTGCCCGTTCCGTCGCCTCTCTCTCAAGCTCGTCAGGGCGGTTC
TGGTTAACACGGTGGCCGTTCTGTCGCCTCTCTCTCAAGCTCGATAGGGC
GGTTCTGGTTAATATGGTGGTGGGGAGAGGTCCGTGGGGTTGGGGCGGAG
CGAGAAGCGATGGTGGTGAGGGAGACCGAGCTGTTGTAGTCAAAGGCTTG
GCAGGGATGTGTTGGGTGTAATTTTGGGGCGAGACGGGGGGCGAAACGCG
TTGAGGTGCTCGTTTGGTGCTTGGCTGACTCTTGGCCACGCGTCCCTTCA
ATTTGTTCGACGCCTCTCGAGCGCTTGTCTTAACGTGTCGAACGGTTCGT
TTAGTCCACCCTCCTGCGTTTGAAGTTCAGACCTTCCTGTGTGTTGTGCT
GGCTCAAGCCTCGTTCTAATTGACGTGTGCTTGTTGTTGTTGCGTGGTGT
GTGACATTTCGCGCTCTCTCGCGTTTGTTTGTTTTTTTCAGGGACGACGG
ATCGGAGTTTTTAGACGGGGGAGTGTACGAGGGCGAGGACGATGACGACG
ATGGCTGGGGTAGCGAGGGCGACTGGCAAGGGGAAAAGTCAAGCGGGTGA
GCCGTTACACGACCTGCTGCAACTGCTGTTGCCGTTGCCGTCGCTGTGAT
CCCAGCACTGGCTGCTGCTGCTGCTGCTGTTGTTGTTGCTGCTGCTGCTG
CTGCTGCTGTGGCTCCACGGCAGCGAGTGCCGTGCTACGATCTATGCTTT
GTTTGCTCTGAATCATGATATACGACGATGCCCCACCCCCCACCCCGCGG
ACTCCTCATGGTGTAGTTGAAAACCCAAGGTTAGCATTGGCAGCACCGAC
TACGGAAATGTTGCTCCCTTACATCCTCCTTCCATCCTCTCAAGGCCTGA
AATGCCTCGCACGTGCATGGCAAAGTACTGCTGTATACCCCAGACCACGC
CCCCCCCCCCTTTTTTCTCCCTGGGAAATTGTCTTTAGTTTTTGGCCGCG
TTCATTTACAAGAAATTCGACTTGGTTGTAGGTTAGTGTTTCTGTGTTCA
TTTTTTGAGGAGTTCGACTGTGGTTAACGGGTAGTCTTTCTGTGTTCGTA
TATATATTGGTCAAGAAAATAAGTTCGCCGCTTTTATGCACCGTGGGTCA
CCCGAGACCCTCTCCTCACCTTCGCTCTTTGGCAGCGTTGGCATGCCACC
GTCGCCTTCTGAAGGGGATCACTTCCAGGCGAGCGCCACCCCCAGGTTGG
GCAGAAGGTTCATGCAGGATTCTCTCCGTCGGCGTGCGGCAGATGGCGGG
GCGCTCGGCACAGGCGGCGGCGGCGGCGGCGGCGGGGGGGGTACCCGTGG
AGACGCGGGGGGAATACAGCTGGGGCCGATGGGGAAGAGCGGGCGGGGCG
AGGCTAACCTGATTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9259:1521..4787-

>mRNA_Ecto-sp9_F_contig9259.17419.1 ID=mRNA_Ecto-sp9_F_contig9259.17419.1|Name=mRNA_Ecto-sp9_F_contig9259.17419.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2088bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9259:1521..4787- (Ectocarpus species9 EcSCA_722f female)
CAGGTGCATGTGGACGACGAAAACGAAGAAATTTATTTCGCCCCGGTGGC
AGAGATCGGAAGCGGCGACAGCAGTAGTGGGGATGGCGTGGGCGGGGGGG
AAGCCGGCGAGCAAACGGAGCAAACGGAGCAAGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGACGGCACGATATGGCTGCGATCCTCGCAA
CGCTTGGGCTCCGTGGGGCAGGTGCATGTGGACGACGAAAACGAAGAAAT
TTATTTCGCCCCGGTGGCAGAGATCGGAAGCGGCGACAGCAGTAGTGGGG
ATGGCGTGGGCGGGGGGGAAGCCGGCGAGCAAACGGAGCAAACGGAGCAA
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGACGGCACGATA
TGGCTGCGATCCTCGCAACGCTTGGGCTCCGTGGGGCTATGCGGTGGTGA
CGGTGGAGGGCCGAACGGTGCTGGACGTGGTCCCGCCAACGATAGCCTTC
TCCGAGACGCTCGTCACCACGCGCTCGGACCTCGACCCCTTCCTCCACGT
CGAGGCCTTGACCTACGACCCCGGCAGCGGGGGTATCGGCGGCGGAGCCG
CTGCAGGCGGCGGGGGAGCCGAAGGCGCTTCGGGGGAAGGAATCTCGCCG
GAAGGTAGCGTCGGCGGCGGGGGTGGGGGACAGTTCTTGACATTCGGGCT
GTCTAGCCGGAACTCGGCTGTGGTCGGATCGGCGTTTCTGGTGGTGGGGC
TGTTGCTCCTGGTGCAGCCGGTGCTGGCGCTCAAGGCGTGGTGGCGAGAA
GGCGGCGGCGACTCTGACGAGGGGGGCCCCGCCGGTGGTGGGGGAGGTGG
GGCTAACGGCGGGCGGAGCGGACGGGGCGGGAAGCTGCGGGGGCAGTGGC
GATACGGGCAGCTTGAGACCGATTGCTATGCGGTGGTGACGGTGGAGGGC
CGAACGGTGCTGGACGTGGTCCCGCCAACGATAGCCTTCTCCGAGACGCT
CGTCACCACGCGCTCGGACCTCGACCCCTTCCTCCACGTCGAGGCCTTGA
CCTACGACCCCGGCAGCGGGGGTATCGGCGGCGGAGCCGCTGCAGGCGGC
GGGGGAGCCGAAGGCGCTTCGGGGGAAGGAATCTCGCCGGAAGGTAGCGT
CGGCGGCGGGGGTGGGGGACAGTTCTTGACATTCGGGCTGTCTAGCCGGA
ACTCGGCTGTGGTCGGATCGGCGTTTCTGGTGGTGGGGCTGTTGCTCCTG
GTGCAGCCGGTGCTGGCGCTCAAGGCGTGGTGGCGAGAAGGCGGCGGCGA
CTCTGACGAGGGGGGCCCCGCCGGTGGTGGGGGAGGTGGGGCTAACGGCG
GGCGGAGCGGACGGGGCGGGAAGCTGCGGGGGCAGTGGCGATACGGGCAG
CTTGAGACCGATTGGGACGACGGATCGGAGTTTTTAGACGGGGGAGTGTA
CGAGGGCGAGGACGATGACGACGATGGCTGGGGTAGCGAGGGCGACTGGC
AAGGGGAAAAGTCAAGCGGGGACGACGGATCGGAGTTTTTAGACGGGGGA
GTGTACGAGGGCGAGGACGATGACGACGATGGCTGGGGTAGCGAGGGCGA
CTGGCAAGGGGAAAAGTCAAGCGGCGTTGGCATGCCACCGTCGCCTTCTG
AAGGGGATCACTTCCAGGCGAGCGCCACCCCCAGGTTGGGCAGAAGGTTC
ATGCAGGATTCTCTCCGTCGGCGTGCGGCAGATGGCGGGGCGCTCGGCAC
AGGCGGCGGCGGCGGCGGCGGCGGGGGGGGTACCCGTGGAGACGCGGGGG
GAATACAGCTGGGGCCGATGGGGAAGAGCGGGCGGGGCGAGGCTAACCTG
ATTTGACGTTGGCATGCCACCGTCGCCTTCTGAAGGGGATCACTTCCAGG
CGAGCGCCACCCCCAGGTTGGGCAGAAGGTTCATGCAGGATTCTCTCCGT
CGGCGTGCGGCAGATGGCGGGGCGCTCGGCACAGGCGGCGGCGGCGGCGG
CGGCGGGGGGGGTACCCGTGGAGACGCGGGGGGAATACAGCTGGGGCCGA
TGGGGAAGAGCGGGCGGGGCGAGGCTAACCTGATTTGA
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