mRNA_Ecto-sp9_F_contig9220.17396.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9220.17396.1
Unique NamemRNA_Ecto-sp9_F_contig9220.17396.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9220.17396.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.810e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ 120
            AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ
Sbjct:  238 AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ 277
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BLAST of mRNA_Ecto-sp9_F_contig9220.17396.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.690e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ 120
            AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ
Sbjct:  335 AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ 374
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BLAST of mRNA_Ecto-sp9_F_contig9220.17396.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB01_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-13
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ 120
            AGFLGYAVRLL+LRP HE LRWT L A+F+DLAVF+T+EQ
Sbjct:   30 AGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFKTSEQ 69
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9220.17396.1 vs.
Match: F-box (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.650e-13
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ 120
            AGFLGYAVRLL+LRP HE LRWT L A+F+DLAVFET+EQ
Sbjct:  442 AGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQ 481
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9220.17396.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
F-box1.810e-18100.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
F-box2.690e-18100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.460e-1377.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
F-box5.650e-1380.00domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9220contigEcto-sp9_F_contig9220:1359..1478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003250.1
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.2261596-CDS-Ecto-sp9_F_contig9220:1358..14781622930997.2261596-CDS-Ecto-sp9_F_contig9220:1358..1478Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9220 1359..1478 +
1692278985.8621056-CDS-Ecto-sp9_F_contig9220:1358..14781692278985.8621056-CDS-Ecto-sp9_F_contig9220:1358..1478Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9220 1359..1478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9220.17396.1prot_Ecto-sp9_F_contig9220.17396.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9220 1359..1478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9220.17396.1

>prot_Ecto-sp9_F_contig9220.17396.1 ID=prot_Ecto-sp9_F_contig9220.17396.1|Name=mRNA_Ecto-sp9_F_contig9220.17396.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=40bp
AGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQ
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mRNA from alignment at Ecto-sp9_F_contig9220:1359..1478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9220.17396.1 ID=mRNA_Ecto-sp9_F_contig9220.17396.1|Name=mRNA_Ecto-sp9_F_contig9220.17396.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9220:1359..1478+ (Ectocarpus species9 EcSCA_722f female)
GCCGGCTTCCTCGGCTACGCCGTGCGCCTGCTGCGGCTGCGGCCGGAGCA
CGAGCCCCTGCGGTGGACGGCGCTGTTCGCCCTCTTCAGGGACCTGGCTG
TTTTCGAGACCACCGAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9220:1359..1478+

>mRNA_Ecto-sp9_F_contig9220.17396.1 ID=mRNA_Ecto-sp9_F_contig9220.17396.1|Name=mRNA_Ecto-sp9_F_contig9220.17396.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9220:1359..1478+ (Ectocarpus species9 EcSCA_722f female)
GCCGGCTTCCTCGGCTACGCCGTGCGCCTGCTGCGGCTGCGGCCGGAGCA
CGAGCCCCTGCGGTGGACGGCGCTGTTCGCCCTCTTCAGGGACCTGGCTG
TTTTCGAGACCACCGAGCAGGCCGGCTTCCTCGGCTACGCCGTGCGCCTG
CTGCGGCTGCGGCCGGAGCACGAGCCCCTGCGGTGGACGGCGCTGTTCGC
CCTCTTCAGGGACCTGGCTGTTTTCGAGACCACCGAGCAG
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