mRNA_Ecto-sp9_F_contig921.17385.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Smr (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G092_ECTSI) HSP 1 Score: 157 bits (397), Expect = 3.620e-48 Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query: 1 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGRWG 228
MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFA+LSEHSTG WG
Sbjct: 52 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAKLSEHSTGGWG 127
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE) HSP 1 Score: 156 bits (395), Expect = 3.930e-43 Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 1
Query: 1 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGRWG 228
MGALA RGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTG WG
Sbjct: 579 MGALAARGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGGWG 654
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR71_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.790e-12 Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
LAE GL +R++TG GHHSKGP N ARLLPAVE F GY ++ V D+ GHVG + V
Sbjct: 943 LAEDGLELIRIVTGAGHHSKGPQNTARLLPAVEQFLRSEGYEYKSVVDRK-GHVGMLQV 1000
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein AlNc14C400G11359 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYU9_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 6.960e-12 Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
LAE GL +VR++TGTGHHS+GP N ARLLPAVE+F GY V D+ G+VG + V
Sbjct: 481 LAEDGLDTVRIVTGTGHHSRGPQNTARLLPAVEHFLRTEGYESESVADRK-GYVGMLQV 538
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIW3_PYTOL) HSP 1 Score: 65.9 bits (159), Expect = 8.440e-11 Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
LA+ GL S+ ++TG+GHHSKGPT ARLLPAVE F GY F V D+ G+VG + V
Sbjct: 466 LADDGLESIYLVTGSGHHSKGPTGNARLLPAVEQFLTAEGYRFSPVADRR-GYVGMLMV 523
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV24_GLOUD) HSP 1 Score: 65.5 bits (158), Expect = 1.160e-10 Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
LA+ GL ++ ++TG+GHHSKGP ARLLPA+E F GY F VPD G+VG + V
Sbjct: 554 LADEGLETIYLVTGSGHHSKGPQGNARLLPAIEQFLAAEGYQFSSVPD-GRGYVGMLLV 611
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB56_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 3.600e-9 Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
LA+ G+ + V+TG+GHHSKGP ARLLPAVE F GY F V D G VG + V
Sbjct: 535 LADEGVDEIYVVTGSGHHSKGPHGNARLLPAVERFLAAEGYQFTPVAD-GAGFVGMLLV 592
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Membrane (metallo-endopeptidase 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKZ9_PHYNI) HSP 1 Score: 60.8 bits (146), Expect = 4.450e-9 Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
LA+ G+ S+ ++TG+GHHSKGP ARLLPAVE F GY + V D++ G VG + V
Sbjct: 281 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGMLLV 338
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: NEDD4-binding (protein 2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C524_PHYNI) HSP 1 Score: 60.8 bits (146), Expect = 4.910e-9 Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
LA+ G+ S+ ++TG+GHHSKGP ARLLPAVE F GY + V D++ G VG + V
Sbjct: 511 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGMLLV 568
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT46_PHYIT) HSP 1 Score: 60.5 bits (145), Expect = 6.730e-9 Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
LA+ G+ S+ ++TG+GHHSKGP ARLLPAVE F GY + V D S G VG + V
Sbjct: 535 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADGS-GFVGMLLV 592 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig921.17385.1 >prot_Ecto-sp9_F_contig921.17385.1 ID=prot_Ecto-sp9_F_contig921.17385.1|Name=mRNA_Ecto-sp9_F_contig921.17385.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=77bp MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPback to top mRNA from alignment at Ecto-sp9_F_contig921:10002..10701- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig921.17385.1 ID=mRNA_Ecto-sp9_F_contig921.17385.1|Name=mRNA_Ecto-sp9_F_contig921.17385.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=700bp|location=Sequence derived from alignment at Ecto-sp9_F_contig921:10002..10701- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig921:10002..10701- >mRNA_Ecto-sp9_F_contig921.17385.1 ID=mRNA_Ecto-sp9_F_contig921.17385.1|Name=mRNA_Ecto-sp9_F_contig921.17385.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp9_F_contig921:10002..10701- (Ectocarpus species9 EcSCA_722f female)back to top |