mRNA_Ecto-sp9_F_contig9198.17375.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9198.17375.1
Unique NamemRNA_Ecto-sp9_F_contig9198.17375.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X2_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.180e-53
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKETPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            GVD HGGNVQNGCGK FLWS+ARPYRGDRGECK TPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ
Sbjct:  592 GVDTHGGNVQNGCGKSFLWSQARPYRGDRGECKVTPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ 678          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: RING-type (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9T2_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.340e-21
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKE-TPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            G +AHGGN+QNGCG+ F W+ A  Y  D GE +   PF E  PA  AR  H I DG  ++CD C   ++GPL  C++CPSF+CC+ CQ
Sbjct:  481 GQNAHGGNIQNGCGQAFDWNDALLYVADIGEKRSIVPFQEVPPAEIARVEHQIMDGTPVKCDVCSAKIMGPLAMCINCPSFSCCIRCQ 568          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: Zinc (finger family protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH16_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.760e-19
Identity = 60/86 (69.77%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    2 ASTLMAGTFRMAAARDSCGVEHGPTEAIGESARKRRSPNKSRRRRLARGTSSPTGSRSGATAATGTLSAPSSAACTAHRSPAAWSV 259
            ASTLMAGTFRMAAARDS GVEHG TEAIGESAR+RRSPNKSRRRRLARGTS                      ACTAHRS AAWSV
Sbjct:  316 ASTLMAGTFRMAAARDSRGVEHGLTEAIGESARQRRSPNKSRRRRLARGTSXXXXXXXXXXXXXXXXXXXXXXACTAHRSRAAWSV 401          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4W0_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 6.990e-15
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKETPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            G D HGGN+QNGCGKRF WS+++PY+       +T   +  P    R+RH    G  + CD C + +VG  F CVHC SF  C  C+
Sbjct:  295 GSDYHGGNIQNGCGKRFNWSQSQPYKSTGLSGPKTVEFQPPPNPKQRTRH----GDWIPCDNCKQQIVGLRFSCVHCRSFNLCENCE 377          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: RNF14 (protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RJH2_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 2.460e-14
Identity = 37/90 (41.11%), Postives = 45/90 (50.00%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKETPFTEQEPAAAARSRHFIADGIA---LRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            G D HGGN Q GCG RF W +AR Y+         P +   P    +       GI     RC RCH+D+VGP FRC+HCP +  C  C 
Sbjct:  252 GEDTHGGNRQQGCGHRFQWDKARAYQA-------APDSRPLPRLDVQDVKVRGAGIRHPFCRCSRCHQDIVGPRFRCIHCPDYNLCASCD 334          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: Hsdl2 (protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812J641_9DINO)

HSP 1 Score: 74.7 bits (182), Expect = 9.540e-14
Identity = 36/90 (40.00%), Postives = 45/90 (50.00%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKETPFTEQEPAAAARSRHFIADGIA---LRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            G DAHGGN+Q GCG RF W++AR Y+         P + Q P            G+     RC RC   +VGP FRC+HCP +  C  C 
Sbjct:  383 GQDAHGGNLQQGCGHRFQWNKARAYQA-------APDSRQLPLLNVADVRVRGSGVRHPFCRCSRCKECIVGPRFRCIHCPDYNLCASCD 465          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: RNF14 (protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YGP9_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 3.250e-13
Identity = 36/90 (40.00%), Postives = 44/90 (48.89%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKETPFTEQEPAAAARSRHFIADGIA---LRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            G D HGGN Q GCG RF W +AR Y+         P +   P    +       GI     RC RC +D+VGP FRC+HCP +  C  C 
Sbjct:  262 GEDTHGGNRQQGCGHRFQWDKARAYQA-------APDSRPLPRLDVQDVKVRGAGIRHPFCRCSRCQQDIVGPRFRCIHCPDYNLCASCD 344          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: Hsdl2 (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813CMB1_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 3.350e-13
Identity = 36/90 (40.00%), Postives = 44/90 (48.89%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKETPFTEQEPAAAARSRHFIADGIA---LRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            G D HGGN Q GCG RF W +AR Y+         P +   P    +       GI     RC RC +D+VGP FRC+HCP +  C  C 
Sbjct:  360 GEDTHGGNRQQGCGHRFQWDKARAYQA-------APDSRPLPRLDVQDVKVRGAGIRHPFCRCSRCRQDIVGPRFRCIHCPDYNLCASCD 442          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: RBR-type (E3 ubiquitin transferase n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A814MX83_9BILA)

HSP 1 Score: 72.0 bits (175), Expect = 5.030e-13
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKETPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            G DAHGGN+Q+GCG +F W++A+ Y         TP  +Q      +  + +     ++CD C  DVVG  F CVHCPS   C +C+
Sbjct:  192 GQDAHGGNLQSGCGAKFNWAQAQQYN-----AAATPQPKQVILDLPKPENPVVHHNGVKCDHCQNDVVGIRFDCVHCPSLTYCEKCE 273          
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Match: Hypothetical (protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SN24_9DINO)

HSP 1 Score: 72.4 bits (176), Expect = 6.300e-13
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKE--TPFTEQEPAAAARS-RH-FIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ 261
            G +AHGGN Q GCG RF W  ARPY+   G  +   T    +  A   R  RH F   G+     +C   +VGP FRC+HCP+F CCL+C+
Sbjct:  443 GQNAHGGNRQPGCGHRFSWRDARPYKPRAGFARRMATTMLARRGAVGGRGVRHLFTHCGLCGSGGKC---IVGPRFRCIHCPAFNCCLKCE 530          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9198.17375.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
Uncharacterized2.180e-5395.40protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
RING-type1.340e-2150.00domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Zinc1.760e-1969.77finger family protein, putative n=1 Tax=Ectocarpus... [more]
Uncharacterized6.990e-1543.68protein n=1 Tax=Arcella intermedia TaxID=1963864 R... [more]
RNF142.460e-1441.11protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=15... [more]
Hsdl29.540e-1440.00protein n=1 Tax=Symbiodinium natans TaxID=878477 R... [more]
RNF143.250e-1340.00protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=63... [more]
Hsdl23.350e-1340.00protein n=1 Tax=Symbiodinium necroappetens TaxID=1... [more]
RBR-type5.030e-1339.08E3 ubiquitin transferase n=2 Tax=Rotaria sordida T... [more]
Hypothetical6.300e-1343.96protein n=1 Tax=Alexandrium monilatum TaxID=311494... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9198contigEcto-sp9_F_contig9198:614..1334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog529818.AMSG_02933T0
KEGG koko:K11971,ko:K11976
EggNOG free text desc.protein side chain deglutamylation
EggNOG OGsKOG1814@1,KOG1814@2759
EC2.3.2.31
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.6997762-CDS-Ecto-sp9_F_contig9198:613..7181622930992.6997762-CDS-Ecto-sp9_F_contig9198:613..718Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9198 614..718 +
1692278984.0232575-CDS-Ecto-sp9_F_contig9198:613..7181692278984.0232575-CDS-Ecto-sp9_F_contig9198:613..718Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9198 614..718 +
1622930993.1046007-CDS-Ecto-sp9_F_contig9198:1178..13341622930993.1046007-CDS-Ecto-sp9_F_contig9198:1178..1334Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9198 1179..1334 +
1692278984.0339637-CDS-Ecto-sp9_F_contig9198:1178..13341692278984.0339637-CDS-Ecto-sp9_F_contig9198:1178..1334Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9198 1179..1334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9198.17375.1prot_Ecto-sp9_F_contig9198.17375.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9198 614..1334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9198.17375.1

>prot_Ecto-sp9_F_contig9198.17375.1 ID=prot_Ecto-sp9_F_contig9198.17375.1|Name=mRNA_Ecto-sp9_F_contig9198.17375.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=87bp
GVDAHGGNVQNGCGKRFLWSRARPYRGDRGECKETPFTEQEPAAAARSRH
FIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ
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mRNA from alignment at Ecto-sp9_F_contig9198:614..1334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9198.17375.1 ID=mRNA_Ecto-sp9_F_contig9198.17375.1|Name=mRNA_Ecto-sp9_F_contig9198.17375.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=721bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9198:614..1334+ (Ectocarpus species9 EcSCA_722f female)
GGCGTCGACGCTCATGGCGGGAACGTTCAGAATGGCTGCGGCAAGAGATT CTTGTGGAGTCGAGCACGGCCCTACCGAGGCGATCGGGGAGAGTGCAAGG AAACGGTAAGTCCGCCGCCGAGCCGAAAGCATGCCTCCCTAGGACACGGA ATCTCCCCCAAGCAGCATCGTGGAATCTCCCAGCGGACCGGCGTCGCCGT TGTGCGCGGAGGAATTTTTTAATCATTCTTCGATTCACCCATGGATCTTT TGTCAGCGGAGGCTCACTGCCCCGTGATGTTTTTCGCTGGTACGGCGAGA CAGAAGACGCCCCCATGAAACAATTGATTAATTAGACTTTTTTCTCCCTC CCAACTCCGAAACTATCGTGCGACTGCTGTCTCTCCTCCCTGCCGGAGAG ACCACCCCTTCCTCTAAACCCTTCTTACCTGCCCTCCCCGCTCTCATTCG CTTGGTTTTTGGTACAGCCGTTCACGGAGCTCAGCAAATTAACGAGACTT TCCTCCCTCCCCTACCCCCTCTTGCTGTCCTCCACGCTCACACTCCCGCT TGGTTTTGGGCACAGCCGTTCACCGAACAAGAGCCGGCGGCGGCGGCTCG CTCGAGGCACTTCATCGCCGACGGGATCGCGCTCCGGTGCGACCGCTGCC ACCGGGACGTTGTCGGCCCCCTCTTCCGCTGCGTGCACTGCCCATCGTTC GCCTGCTGCCTGGAGTGTCAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9198:614..1334+

>mRNA_Ecto-sp9_F_contig9198.17375.1 ID=mRNA_Ecto-sp9_F_contig9198.17375.1|Name=mRNA_Ecto-sp9_F_contig9198.17375.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9198:614..1334+ (Ectocarpus species9 EcSCA_722f female)
GGCGTCGACGCTCATGGCGGGAACGTTCAGAATGGCTGCGGCAAGAGATT
CTTGTGGAGTCGAGCACGGCCCTACCGAGGCGATCGGGGAGAGTGCAAGG
AAACGGGCGTCGACGCTCATGGCGGGAACGTTCAGAATGGCTGCGGCAAG
AGATTCTTGTGGAGTCGAGCACGGCCCTACCGAGGCGATCGGGGAGAGTG
CAAGGAAACGCCGTTCACCGAACAAGAGCCGGCGGCGGCGGCTCGCTCGA
GGCACTTCATCGCCGACGGGATCGCGCTCCGGTGCGACCGCTGCCACCGG
GACGTTGTCGGCCCCCTCTTCCGCTGCGTGCACTGCCCATCGTTCGCCTG
CTGCCTGGAGTGTCAGCCGTTCACCGAACAAGAGCCGGCGGCGGCGGCTC
GCTCGAGGCACTTCATCGCCGACGGGATCGCGCTCCGGTGCGACCGCTGC
CACCGGGACGTTGTCGGCCCCCTCTTCCGCTGCGTGCACTGCCCATCGTT
CGCCTGCTGCCTGGAGTGTCAG
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