mRNA_Ecto-sp9_F_contig9197.17374.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9197.17374.1
Unique NamemRNA_Ecto-sp9_F_contig9197.17374.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9197.17374.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9197contigEcto-sp9_F_contig9197:1152..3568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size1257
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9197.17374.1prot_Ecto-sp9_F_contig9197.17374.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9197 1962..3568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.5160732-UTR-Ecto-sp9_F_contig9197:1151..19611622930992.5160732-UTR-Ecto-sp9_F_contig9197:1151..1961Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9197 1152..1961 -
1692278983.976568-UTR-Ecto-sp9_F_contig9197:1151..19611692278983.976568-UTR-Ecto-sp9_F_contig9197:1151..1961Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9197 1152..1961 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.5297823-CDS-Ecto-sp9_F_contig9197:1961..20361622930992.5297823-CDS-Ecto-sp9_F_contig9197:1961..2036Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9197 1962..2036 -
1692278983.9848402-CDS-Ecto-sp9_F_contig9197:1961..20361692278983.9848402-CDS-Ecto-sp9_F_contig9197:1961..2036Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9197 1962..2036 -
1622930992.5435584-CDS-Ecto-sp9_F_contig9197:2316..24201622930992.5435584-CDS-Ecto-sp9_F_contig9197:2316..2420Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9197 2317..2420 -
1692278983.996407-CDS-Ecto-sp9_F_contig9197:2316..24201692278983.996407-CDS-Ecto-sp9_F_contig9197:2316..2420Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9197 2317..2420 -
1622930992.5558145-CDS-Ecto-sp9_F_contig9197:2960..31031622930992.5558145-CDS-Ecto-sp9_F_contig9197:2960..3103Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9197 2961..3103 -
1692278984.004776-CDS-Ecto-sp9_F_contig9197:2960..31031692278984.004776-CDS-Ecto-sp9_F_contig9197:2960..3103Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9197 2961..3103 -
1622930992.567205-CDS-Ecto-sp9_F_contig9197:3443..35681622930992.567205-CDS-Ecto-sp9_F_contig9197:3443..3568Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9197 3444..3568 -
1692278984.0135903-CDS-Ecto-sp9_F_contig9197:3443..35681692278984.0135903-CDS-Ecto-sp9_F_contig9197:3443..3568Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9197 3444..3568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9197.17374.1

>prot_Ecto-sp9_F_contig9197.17374.1 ID=prot_Ecto-sp9_F_contig9197.17374.1|Name=mRNA_Ecto-sp9_F_contig9197.17374.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=149bp
MLPKPRAPPSPLPLTVPGVLVLTRYKILRCSLESCGSRNSLRLRLGGMVW
QMTIVAVSLVSLVSLAVVYAAIASMISEQTTSGNVGIRSGEVCNPGDVGY
DPGDMDEAIFYAFECILDIFVLVVILRTLWFAALLLGGTATTLLVRAM*
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mRNA from alignment at Ecto-sp9_F_contig9197:1152..3568-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9197.17374.1 ID=mRNA_Ecto-sp9_F_contig9197.17374.1|Name=mRNA_Ecto-sp9_F_contig9197.17374.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2417bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9197:1152..3568- (Ectocarpus species9 EcSCA_722f female)
ATGCTCCCGAAGCCCCGGGCACCGCCATCTCCGCTACCATTGACGGTGCC
AGGTGTGCTTGTGCTGACGAGGTACAAGATTCTACGCTGCAGTCTGGAAT
CCTGTGGATCCCGCAACTCTTTGCGGTAAGATGATCAGTGTATGTGCCCT
GAGGCTTAGCGGTAAGATTATCCAGACCTGCCGTCTTCCAACATCACAAC
GTACCTTGCTTTCGATCAGCCCGCAGGAGTGGTTGTTGGTGTCCAACGCC
ATTCGAGCAAAAGCAGTGGCATTACATGTACATGTCTAACCACCACCACC
ACCCGGGGATAATAGTACGGAGCCCTAGCTTGCCCGCGAGGCAAGTAGAC
TCGTGCTTTACATTATTTGGTGTGTGTTTCTTCAGACTAGCGTCTCGAAT
AAACTGACATTGGTGCGCCGGCGTGCAACTAATAATGGCACTCGTGTGCT
TGTCTGTCATGGCAGTCTCCGATTGGGCGGCATGGTTTGGCAGATGACTA
TCGTTGCGGTATCGCTGGTATCGCTGGTATCGCTGGCGGTTGTTTATGCC
GCCATCGCCAGCATGATCTCGGAGCAGACTACGAGCGGCAACGTCGGTAT
CAGATCAGGTAAGCTCCGCACAACGAACATCCGCTCGCTAGATTATCATG
ATCGTGTTTGCGCTGGAAGGAGCTCTGTCCGTTGCTTCTGCGTTTACCCG
TTCTGGAATCATTTCTTCAGCCAGTCGCTACCGTTACCGGAGGTGAAGAC
TTCTGACTACATGTACTGTAGTCAACCAGATATTTCATCGTGTCGTGTTC
GTCTCGACGCTCAGCATCTCATCGTGACGCGAAAGGTAGAAGACTATTCA
GGCTACAGTAGATGTTGATCGTCGCCTCCGTCGAAACTTTTCTCTCGCCG
CCGTCCGTCATTCGGTGGAAGAACGGCGTTCCCGAATTCTGAAGCCATGT
GCAGTGCCAAGCAGCACCGCCGGCTGGTTGCGAACGCTGACATGCAATCA
ATGTAGTTCGGCAATATCACAGCGCACTGGTGAGTGTCCGCAACAGCAGT
GGTCGGCCGGGCTCTGACATGCGAGTGCGTGCAAACCGTTGAGTGAGAGA
CAATGCTCATTTCTGTGATTTTACTGAACCCGATGATCACGCCGCCAGGC
GAGGTATGTAACCCCGGGGACGTCGGCTACGACCCTGGAGACATGGACGA
GGCCATCTTCTACGCGTTCGAATGCATCTTGGACATCTTCGTGCTGGTTG
TGGTGAGAGCTCGTCGAATGCGGCGTCCTCGCGCTACCCACAGCCTACGG
AAGCTTGTCATTCTTCTTTTGCTGACCTTATCCCAAGGTCCACCAGGCAG
GGCCGTCGCAGTGCTTTCTTCGCGGTGTAAATCCTTCGCGACGAGGTTGG
TTTTCAATGAATGGGAATAAAGCCAATAGTTAAACACTCACTCGCTGAAC
ACTCGTTGAACATCGGCCCAATGTAAGCAGTCAGTTGGCGCCCCGTTTGC
ATTCAATTCCCGCCGGTCGTGTTTTCGATCAGATCTTGCGCACGCTGTGG
TTCGCCGCGTTGTTGCTGGGAGGGACTGCAACTACCCTCCTCGTCCGGGC
TATGTAGGGAGGGGCGACTTATTTTCCGCCCAGAACAATAATTTCAATTG
GTGGTACCACTGTAGTCTGGCCATGACTACCAACATGTATATTTGTATAT
TTGGAGTTGGACGGAATTCTAGCATGATGCCAGCCAGTGATCCCCACATC
AAGGCACACGCTCCGACTGGAAGAAGAGGCGGAATTTTGTACAAAACGTG
GAATACCTTGCTCGGGTTCGTTTTTGTTGTTAGGTCGTCGGCGAAAACGT
GAGTCCGGGGATGGTGGAGAGAAATCGTTGGCCGCCCTATCGCCCAGACG
TTTGGGACACGCTGATTGCTCGTGGGCTGGCTGTTGAACTTGCAGTCACG
ACAGGCGAGGGACGCACAGTTTAGTATAGACGGCACCGGCGCTAGCTGTG
CAACAAGTTAGAACAACGCTGAATCCTCTGCGATTGATTGTAGGGGGGAA
TTTTGAGACCCGGCAAACAAGCGTCGAGGCCTGACTTGGAGCACCTAGAT
TTGTTGCTCGTGACGAAGAGGAGGCAGCATACGGGCGTGCCTTAGTTACC
TAGTCTCTGGAGGGCCAGGACTTTTTTTCGCGGTTTTGAATGGGATCCCC
CACAAAAGTGAGAGATAAATCCAAGGGCAGGGGAAGGCGAGCAGTCAGAG
CTCTGTGTCTGTTTGAACAACAAACGTTGCACACAACGCGCACTACACAG
AGCTTGATTGCCGTCTACTGTAGGCTACCCCCTCCGCAACGCGTTAGTTG
GCGGTTATGAGAAACGGTGGTTATCATCTCGCCAAGTACAGAGAGAGAGA
TGGGCCATGCCAATGGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9197:1152..3568-

>mRNA_Ecto-sp9_F_contig9197.17374.1 ID=mRNA_Ecto-sp9_F_contig9197.17374.1|Name=mRNA_Ecto-sp9_F_contig9197.17374.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=894bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9197:1152..3568- (Ectocarpus species9 EcSCA_722f female)
ATGCTCCCGAAGCCCCGGGCACCGCCATCTCCGCTACCATTGACGGTGCC
AGGTGTGCTTGTGCTGACGAGGTACAAGATTCTACGCTGCAGTCTGGAAT
CCTGTGGATCCCGCAACTCTTTGCGATGCTCCCGAAGCCCCGGGCACCGC
CATCTCCGCTACCATTGACGGTGCCAGGTGTGCTTGTGCTGACGAGGTAC
AAGATTCTACGCTGCAGTCTGGAATCCTGTGGATCCCGCAACTCTTTGCG
TCTCCGATTGGGCGGCATGGTTTGGCAGATGACTATCGTTGCGGTATCGC
TGGTATCGCTGGTATCGCTGGCGGTTGTTTATGCCGCCATCGCCAGCATG
ATCTCGGAGCAGACTACGAGCGGCAACGTCGGTATCAGATCAGTCTCCGA
TTGGGCGGCATGGTTTGGCAGATGACTATCGTTGCGGTATCGCTGGTATC
GCTGGTATCGCTGGCGGTTGTTTATGCCGCCATCGCCAGCATGATCTCGG
AGCAGACTACGAGCGGCAACGTCGGTATCAGATCAGGCGAGGTATGTAAC
CCCGGGGACGTCGGCTACGACCCTGGAGACATGGACGAGGCCATCTTCTA
CGCGTTCGAATGCATCTTGGACATCTTCGTGCTGGTTGTGGCGAGGTATG
TAACCCCGGGGACGTCGGCTACGACCCTGGAGACATGGACGAGGCCATCT
TCTACGCGTTCGAATGCATCTTGGACATCTTCGTGCTGGTTGTGATCTTG
CGCACGCTGTGGTTCGCCGCGTTGTTGCTGGGAGGGACTGCAACTACCCT
CCTCGTCCGGGCTATGTAGATCTTGCGCACGCTGTGGTTCGCCGCGTTGT
TGCTGGGAGGGACTGCAACTACCCTCCTCGTCCGGGCTATGTAG
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