mRNA_Ecto-sp9_F_contig915.17344.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig915.17344.1
Unique NamemRNA_Ecto-sp9_F_contig915.17344.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig915.17344.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig915contigEcto-sp9_F_contig915:11014..12396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-05_002720.1
Exons3
Model size317
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig915.17344.1prot_Ecto-sp9_F_contig915.17344.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig915 11019..12396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.1042526-UTR-Ecto-sp9_F_contig915:11013..110181622930987.1042526-UTR-Ecto-sp9_F_contig915:11013..11018Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig915 11014..11018 +
1692278981.4681087-UTR-Ecto-sp9_F_contig915:11013..110181692278981.4681087-UTR-Ecto-sp9_F_contig915:11013..11018Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig915 11014..11018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930987.118164-CDS-Ecto-sp9_F_contig915:11018..110421622930987.118164-CDS-Ecto-sp9_F_contig915:11018..11042Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig915 11019..11042 +
1692278981.4788246-CDS-Ecto-sp9_F_contig915:11018..110421692278981.4788246-CDS-Ecto-sp9_F_contig915:11018..11042Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig915 11019..11042 +
1622930987.1354144-CDS-Ecto-sp9_F_contig915:11421..115541622930987.1354144-CDS-Ecto-sp9_F_contig915:11421..11554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig915 11422..11554 +
1692278981.4901435-CDS-Ecto-sp9_F_contig915:11421..115541692278981.4901435-CDS-Ecto-sp9_F_contig915:11421..11554Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig915 11422..11554 +
1622930987.153717-CDS-Ecto-sp9_F_contig915:12241..123961622930987.153717-CDS-Ecto-sp9_F_contig915:12241..12396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig915 12242..12396 +
1692278981.5053847-CDS-Ecto-sp9_F_contig915:12241..123961692278981.5053847-CDS-Ecto-sp9_F_contig915:12241..12396Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig915 12242..12396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig915.17344.1

>prot_Ecto-sp9_F_contig915.17344.1 ID=prot_Ecto-sp9_F_contig915.17344.1|Name=mRNA_Ecto-sp9_F_contig915.17344.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=104bp
MYIESGNQPAVSASAGPEVAEQSRRSDSGRSLASGASAHGSFDGGGDQPL
PPGWSARTTPSRPMYNANHANKPIAWEEPVRRAVRFLPGGVSCSSLGINR
VDD*
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mRNA from alignment at Ecto-sp9_F_contig915:11014..12396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig915.17344.1 ID=mRNA_Ecto-sp9_F_contig915.17344.1|Name=mRNA_Ecto-sp9_F_contig915.17344.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1383bp|location=Sequence derived from alignment at Ecto-sp9_F_contig915:11014..12396+ (Ectocarpus species9 EcSCA_722f female)
CCAAGATGTACATCGAAAGCGGCAATCAGGTAAACCGGTGGGTCTTTCCG
GGGAGGAATAGTCTGATTGATCACGGATGCCAGAGGTATTAGTTGCTCTT
TTTGTTGTTGAAATTTTACACCCTCACGCAACACATAAGTACGCCATGTG
AGACAGAGTAGCGTCGTTCCGTGTTTCATGATGACTTGTGTCAATTGTGC
GGCTAATCTAGTGTACCGCATCACTCTTCGACTCAGAAAGTGCACGAGGG
CTTTTGTCGAGCGCACTTTCCCACCGCGCATCCCGGTCCGAAACGTACGG
CGGTGCCGTTCCTGAATTCGCACGCCCGTTGCTGAAAGCAGCGAGCTCGC
CGTGTGTTTCTTCCCTCTCTTTTGTAACCCCTTGACTCAACTTACCATCG
CTGCGAAGCCGGCGGTGTCTGCTTCGGCGGGCCCAGAGGTGGCAGAGCAA
AGCCGTAGATCCGACAGCGGCAGGTCGCTCGCGTCTGGTGCCAGCGCTCA
TGGAAGCTTTGACGGCGGCGGAGACCAGCCACTCCCCCCCGGTATGATCT
GGCGTTTCCTTTTACCAGAGGGGGGGGAGGTTGTTTTGAACTCTTCATGT
ACACGGTGAAGAGCAGACCTGTAACCCTTGGAGACCATAAATAGGGACAA
AACACTTGGTTCTCAAACTGGTTCTCGCCCAGAAAGCCTTTTCGACGTGG
GGAAACGGGTACTTGGGGGCAATACTTGAAAGCACGTAGGAGAAATAAGG
TGGAACAAGAGTGCCTTGAACTACTTGTAAATTTGGCGAGACGCAATCGC
TAGAATCCGTGAAAAATATTTGGAATTTTGTACGGGTGAGAAGGTGGTGC
CGAGATGCGCACGCTCAGAATAAACTACGTCTTCCTGTTGTGACTTATTT
TTGCGGCATAAATCAGCACCCGCCGGCATTCCTCCTTGCGTTGGCGCGGA
CTTTTCCCTAGTCGCTTGTACAGCTGTCCACCGCCTCATCACTCGTTACG
TGACCGCTACACGTACCCCAAGCGGTAGTACTGATGCACTCTGGTTTGTG
TACTCTGGTCGGTGGCGCTGCTGTTGGTGGTGGTTGTGAAGTTATGGTGA
TGCTGGACTCAGTTTTCACGAAGTGGTCTGCTTGCGCCTCAGCTGCCGTT
AGCGTGCCAACTCCGCAATGCAGACGGAAACCTAACACATCGCGGGAATG
TTCTCGTATTCTCTTTTTATTCTCGCAGGTTGGAGCGCTAGAACCACGCC
TTCACGACCGATGTACAACGCGAACCATGCCAATAAGCCCATCGCGTGGG
AAGAGCCTGTTCGCCGTGCGGTCCGCTTTTTGCCAGGTGGCGTAAGTTGT
TCCTCGCTTGGGATCAACCGCGTAGATGACTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig915:11014..12396+

>mRNA_Ecto-sp9_F_contig915.17344.1 ID=mRNA_Ecto-sp9_F_contig915.17344.1|Name=mRNA_Ecto-sp9_F_contig915.17344.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp9_F_contig915:11014..12396+ (Ectocarpus species9 EcSCA_722f female)
ATGTACATCGAAAGCGGCAATCAGATGTACATCGAAAGCGGCAATCAGCC
GGCGGTGTCTGCTTCGGCGGGCCCAGAGGTGGCAGAGCAAAGCCGTAGAT
CCGACAGCGGCAGGTCGCTCGCGTCTGGTGCCAGCGCTCATGGAAGCTTT
GACGGCGGCGGAGACCAGCCACTCCCCCCCGCCGGCGGTGTCTGCTTCGG
CGGGCCCAGAGGTGGCAGAGCAAAGCCGTAGATCCGACAGCGGCAGGTCG
CTCGCGTCTGGTGCCAGCGCTCATGGAAGCTTTGACGGCGGCGGAGACCA
GCCACTCCCCCCCGGTTGGAGCGCTAGAACCACGCCTTCACGACCGATGT
ACAACGCGAACCATGCCAATAAGCCCATCGCGTGGGAAGAGCCTGTTCGC
CGTGCGGTCCGCTTTTTGCCAGGTGGCGTAAGTTGTTCCTCGCTTGGGAT
CAACCGCGTAGATGACTAGGTTGGAGCGCTAGAACCACGCCTTCACGACC
GATGTACAACGCGAACCATGCCAATAAGCCCATCGCGTGGGAAGAGCCTG
TTCGCCGTGCGGTCCGCTTTTTGCCAGGTGGCGTAAGTTGTTCCTCGCTT
GGGATCAACCGCGTAGATGACTAG
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