mRNA_Ecto-sp9_F_contig9109.17300.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9109.17300.1
Unique NamemRNA_Ecto-sp9_F_contig9109.17300.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9109.17300.1 vs.
Match: PDZ (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL6_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.290e-39
Identity = 128/193 (66.32%), Postives = 132/193 (68.39%), Query Frame = 1 
Query:   31 LQVLRGVDRVVEIEVRARDMAEQWGNGPPGRQNGGGAPPPGPRSEPRPYPGAPPPAFPWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVIKADHGRSTAAVDGESAAAAIRPVAETRTGQQQEQ-QEPPTALRADEVLDALGSLVGFGGDGGLGA 606
            L+VLRGVDRVVEI+VRARDMAEQWGNGPPGRQNGGGAPP GPRSE               XXXXXXXXXXXXX                                      XXXXXXXXXXXX RGVIKADHGRSTA VDGE AAAA RPVAETR  QQ++Q QEPPTALRADEVLDALGSLVGFGGDGGLGA
Sbjct:  969 LKVLRGVDRVVEIQVRARDMAEQWGNGPPGRQNGGGAPPXGPRSEXX-XXXXXXXXXXXXXXXXXXXXXXXXXPWRQQQRRQPQTRRLDKTPSQDGATGEKQEGVTQKETPXXXXXXXXXXXXRRGVIKADHGRSTAGVDGERAAAATRPVAETRNWQQEQQXQEPPTALRADEVLDALGSLVGFGGDGGLGA 1160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9109.17300.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PDZ1.290e-3966.32domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9109contigEcto-sp9_F_contig9109:4087..4695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontrypsin-like serine protease
Ec32 orthologEc-12_005910.1
Exons1
Model size609
Cds size609
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.439986-CDS-Ecto-sp9_F_contig9109:4086..46951622930981.439986-CDS-Ecto-sp9_F_contig9109:4086..4695Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9109 4087..4695 -
1692278978.9402936-CDS-Ecto-sp9_F_contig9109:4086..46951692278978.9402936-CDS-Ecto-sp9_F_contig9109:4086..4695Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9109 4087..4695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9109.17300.1prot_Ecto-sp9_F_contig9109.17300.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9109 4087..4695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9109.17300.1

>prot_Ecto-sp9_F_contig9109.17300.1 ID=prot_Ecto-sp9_F_contig9109.17300.1|Name=mRNA_Ecto-sp9_F_contig9109.17300.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=203bp
MFSDPNACTPLQVLRGVDRVVEIEVRARDMAEQWGNGPPGRQNGGGAPPP
GPRSEPRPYPGAPPPAFPWGGGGGSGDGAPSPPWRQQQRRQPQARRLDKA
ASQDGATGEEEEGATQKKTPPPPPPPPPASGGGRRGVIKADHGRSTAAVD
GESAAAAIRPVAETRTGQQQEQQEPPTALRADEVLDALGSLVGFGGDGGL
GA*
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mRNA from alignment at Ecto-sp9_F_contig9109:4087..4695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9109.17300.1 ID=mRNA_Ecto-sp9_F_contig9109.17300.1|Name=mRNA_Ecto-sp9_F_contig9109.17300.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=609bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9109:4087..4695- (Ectocarpus species9 EcSCA_722f female)
ATGTTCTCCGACCCCAATGCCTGCACTCCTCTGCAGGTGCTGCGAGGCGT
GGATAGGGTAGTGGAGATAGAGGTCAGGGCCAGGGACATGGCGGAGCAGT
GGGGCAACGGGCCACCCGGCAGGCAGAACGGCGGTGGTGCCCCCCCCCCT
GGCCCGCGCTCCGAACCCCGACCATACCCCGGGGCCCCTCCGCCCGCGTT
CCCCTGGGGCGGCGGCGGCGGTAGCGGTGACGGAGCTCCTTCGCCTCCCT
GGCGGCAGCAACAGCGGCGGCAACCACAAGCCAGACGACTCGACAAAGCC
GCATCCCAGGACGGGGCCACAGGCGAGGAGGAGGAAGGGGCGACCCAAAA
GAAAACGCCTCCTCCTCCGCCGCCGCCGCCGCCTGCCAGCGGAGGAGGAA
GGAGGGGTGTTATCAAGGCCGATCACGGTCGGAGTACTGCTGCTGTAGAT
GGAGAGAGCGCCGCGGCGGCGATCAGGCCGGTGGCGGAGACGAGAACAGG
GCAGCAGCAGGAGCAGCAGGAGCCGCCCACCGCGTTACGAGCAGACGAGG
TTCTGGATGCGTTAGGCTCGTTGGTGGGCTTCGGCGGCGACGGCGGGTTG
GGTGCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9109:4087..4695-

>mRNA_Ecto-sp9_F_contig9109.17300.1 ID=mRNA_Ecto-sp9_F_contig9109.17300.1|Name=mRNA_Ecto-sp9_F_contig9109.17300.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9109:4087..4695- (Ectocarpus species9 EcSCA_722f female)
ATGTTCTCCGACCCCAATGCCTGCACTCCTCTGCAGGTGCTGCGAGGCGT
GGATAGGGTAGTGGAGATAGAGGTCAGGGCCAGGGACATGGCGGAGCAGT
GGGGCAACGGGCCACCCGGCAGGCAGAACGGCGGTGGTGCCCCCCCCCCT
GGCCCGCGCTCCGAACCCCGACCATACCCCGGGGCCCCTCCGCCCGCGTT
CCCCTGGGGCGGCGGCGGCGGTAGCGGTGACGGAGCTCCTTCGCCTCCCT
GGCGGCAGCAACAGCGGCGGCAACCACAAGCCAGACGACTCGACAAAGCC
GCATCCCAGGACGGGGCCACAGGCGAGGAGGAGGAAGGGGCGACCCAAAA
GAAAACGCCTCCTCCTCCGCCGCCGCCGCCGCCTGCCAGCGGAGGAGGAA
GGAGGGGTGTTATCAAGGCCGATCACGGTCGGAGTACTGCTGCTGTAGAT
GGAGAGAGCGCCGCGGCGGCGATCAGGCCGGTGGCGGAGACGAGAACAGG
GCAGCAGCAGGAGCAGCAGGAGCCGCCCACCGCGTTACGAGCAGACGAGG
TTCTGGATGCGTTAGGCTCGTTGGTGGGCTTCGGCGGCGACGGCGGGTTG
GGTGCTTAAATGTTCTCCGACCCCAATGCCTGCACTCCTCTGCAGGTGCT
GCGAGGCGTGGATAGGGTAGTGGAGATAGAGGTCAGGGCCAGGGACATGG
CGGAGCAGTGGGGCAACGGGCCACCCGGCAGGCAGAACGGCGGTGGTGCC
CCCCCCCCTGGCCCGCGCTCCGAACCCCGACCATACCCCGGGGCCCCTCC
GCCCGCGTTCCCCTGGGGCGGCGGCGGCGGTAGCGGTGACGGAGCTCCTT
CGCCTCCCTGGCGGCAGCAACAGCGGCGGCAACCACAAGCCAGACGACTC
GACAAAGCCGCATCCCAGGACGGGGCCACAGGCGAGGAGGAGGAAGGGGC
GACCCAAAAGAAAACGCCTCCTCCTCCGCCGCCGCCGCCGCCTGCCAGCG
GAGGAGGAAGGAGGGGTGTTATCAAGGCCGATCACGGTCGGAGTACTGCT
GCTGTAGATGGAGAGAGCGCCGCGGCGGCGATCAGGCCGGTGGCGGAGAC
GAGAACAGGGCAGCAGCAGGAGCAGCAGGAGCCGCCCACCGCGTTACGAG
CAGACGAGGTTCTGGATGCGTTAGGCTCGTTGGTGGGCTTCGGCGGCGAC
GGCGGGTTGGGTGCTTAA
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