mRNA_Ecto-sp9_F_contig9108.17299.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9108.17299.1
Unique NamemRNA_Ecto-sp9_F_contig9108.17299.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD01_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 1.930e-120
Identity = 217/308 (70.45%), Postives = 222/308 (72.08%), Query Frame = 1
Query:    1 VFLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDVLPFDPPLQAAALQDYVNTLSPRASSSSSGSS-DEDAGNVGGSLVLSETDLVPLKDAVEAFRAAADK-------------------------------------------------------------------GAGSDXXXXXXXVDSAAEAADWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFLTGDEGRR 720
            VFLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDVLPFDPPLQAAALQ+YVNTLSP +         DEDAGN+GGSLVLSETDL PL+DAVEAFRAAADK                                                                   GAGSD       VDSAAEAA WLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELA+EQVHVAAARIEDAATFLTGDEGRR
Sbjct:  481 VFLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDVLPFDPPLQAAALQEYVNTLSPSSXXXXXXXXXDEDAGNIGGSLVLSETDLAPLQDAVEAFRAAADKVGSWSQEAFSSSGAAGXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXAVGAPDELQGAGSDGGDVGVGVDSAAEAAHWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAKEQVHVAAARIEDAATFLTGDEGRR 788          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: Glutamate (carboxypeptidase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMG7_9STRA)

HSP 1 Score: 180 bits (457), Expect = 6.170e-45
Identity = 115/243 (47.33%), Postives = 139/243 (57.20%), Query Frame = 1
Query:    1 VFLAHLGIATVDFEFQQDEAAE-YGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDVLPFDPPLQAAALQDYVNTLSPRASSSSSGSSDEDAGNVGGSLVLSETDLVPLKDAVEAFRAAADKGAGSDXXXXXXXVDSAAEAADWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFLT-GD-EGRR 720
            VFL HLGI+++D     D     YG+YHS YDSFSW+  +GDP F      + +WG LALR+A + VLP +   QA AL  YV  L     +S               +     DL PL+ AV A+  AA++            V    E A    +A LN+RLA TERRF   EGLP R+WF+HVLQAPGLYLGYA  SFPG+TQALSDGD ELAQ QV VAA R+  AA +L  GD EG R
Sbjct:  512 VFLDHLGISSIDMGAVIDRFKRPYGMYHSTYDSFSWMSRFGDPTFELHVMVAELWGRLALRVADALVLPLEHTAQATALHAYVEELKALVGTSME-------------VAPESLDLAPLEAAVRAYEDAAEQVTREAAGLRSSGVKQDREQA----LAALNDRLAFTERRFCAKEGLPRRKWFKHVLQAPGLYLGYAGVSFPGVTQALSDGDWELAQRQVWVAAERVGTAAAYLAWGDREGGR 737          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: Hypothetical (protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GWE9_9EUKA)

HSP 1 Score: 173 bits (438), Expect = 1.690e-42
Identity = 103/235 (43.83%), Postives = 134/235 (57.02%), Query Frame = 1
Query:    4 FLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLA-TSDVLPFDPPLQAAALQDYVNTLSPRASSSSSGSSDEDAGNVGGSLVLSETDLVPLKDAVEAFRAAADKGAGSDXXXXXXXVDSAAEAADWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFLTG 705
            F+ HLGIA++D  F  D  A YGVYHS+YDSF W+D  GDPGF+Y Q  ++VWGLL LRLA  S  LPF+   QA A+ +YV+ L   A  S +                 +  LVPLK AV  F  AA      D                 ++   L++RLA TERRFL + GLP R+WF+HVLQAPGLY GY ++ FPG+   L + + + A +QV VAA R+  AA +L+G
Sbjct:  513 FIDHLGIASLDIRFVPDTGARYGVYHSVYDSFDWMDKQGDPGFKYHQTMAKVWGLLTLRLADASGRLPFNHTSQADAMHEYVHILEHEAEVSKA----------------PKGLLVPLKAAVTLFEIAARSVGAYD-----------------IDHHTLDDRLAFTERRFLSESGLPHRKWFKHVLQAPGLYKGYGSDVFPGVIHELREKNFDGAFQQVKVAAKRVSAAAAYLSG 714          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP1_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.400e-39
Identity = 95/240 (39.58%), Postives = 135/240 (56.25%), Query Frame = 1
Query:    4 FLAHLGIATVDFEFQ----QDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDVLPFDPPLQAAALQDYVNTLSPRASSSSSGSSDEDAGNVGGSLVLSETDLVPLKDAVEAFRAAADKGAGSDXXXXXXXVDSAAEAADWLEVADLNERLAMTERRFLVDEG---LPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFLT 702
            FL H+GIA V+FEF+          YG YHS+YDSF W++ +GDPGF Y   A++ WGLLALR++  D+LPFD  +QA  L D V+                D+  VG         L  L DA++ F++AA++             D A  + +  +V  LN++L++ ER+FL  EG   LP R WF+HVLQAPGLYLGY A +FPGI Q + + D ++ Q +V  +   I  A +F++
Sbjct:  170 FLHHVGIAAVNFEFEISSKHSRVTTYGTYHSVYDSFDWMEQFGDPGFLYTTVAAQFWGLLALRMSEPDILPFDLAVQAKLLSDQVSDFEALV---------PDSEKVG---------LGDLLDALKGFKSAAEE-----LNRDVAAADLAKISTE--DVEQLNDKLSLCERQFLRPEGEGGLPSRPWFKHVLQAPGLYLGYGAVAFPGIAQGIDENDWDMVQREVSASRKCIRLATSFIS 384          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EC49_9EUKA)

HSP 1 Score: 152 bits (385), Expect = 2.090e-38
Identity = 105/239 (43.93%), Postives = 132/239 (55.23%), Query Frame = 1
Query:    4 FLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLA-TSD--VLPFDPPL----QAAALQDYVNTLSPRASSSSSGSSDEDAGNVGGSLVLSETDLVPLKDAVEAFRAAADKGAGSDXXXXXXXVDSAAEAADWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFL 699
            F+ HLGIA++D  F     A YGVYHS +DSF W+D+ GDPGF +  A ++VWGL+ALRLA T+D  VLP   PL    QA A+  Y+               D D             D  PL  A   F AAA +    +          A   A+   VA L+ER A TER+FL   GLPGR++F+H LQAPGLY GYA ++ PG+  A+S GD + A EQ  +AAARIE AA FL
Sbjct:   61 FIDHLGIASLDLAFWP--GAAYGVYHSDFDSFEWMDSVGDPGFVFHVAMAQVWGLVALRLAGTADTNVLPTPIPLNFTLQAEAIFSYIADAKLH---------DADQ----------HVDYAPLDAAAATFAAAARQAMHDER--------EAVRTANVATVAALDERFAYTERQFLTAGGLPGRKYFKHCLQAPGLYTGYAPKTLPGVYDAVSAGDWKTANEQAGIAAARIEAAAKFL 270          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C128_9EUKA)

HSP 1 Score: 153 bits (387), Expect = 9.210e-38
Identity = 99/247 (40.08%), Postives = 133/247 (53.85%), Query Frame = 1
Query:    4 FLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSD-------------VLPFDPPLQAAALQDYVNTLSPRASSSSSGSSDEDAGNVGGSLVLSETDLVPLKDAVEAFRAAADKGAGSDXXXXXXXVDSAAEAADWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFLTG 705
            F+ HLGI ++D  F     A YGVYHS++DSF W+D+ GDPGF+Y  A S++WGL+ALRLA S               +PF+  LQA A+  Y+     R +               G++V    D   L  A   F AAA+     +         +A    D   +  LNER+  TER+FL  +GLP R++F+H LQAPGLY GYA ++ PG+  A+S GD E A  Q  +AA RI+ AATFL G
Sbjct:  152 FIDHLGIPSLDMAFWP--GAAYGVYHSVFDSFEWMDSVGDPGFKYHVAMSQLWGLVALRLAGSSSEGEDVSAPPSTTTVPFNFTLQAEAIGTYIADAKARPN---------------GTMV----DYRALDAAQAKFAAAAEHAMAQER--------AAMGTHDLALIRSLNERMVYTERQFLTADGLPERKYFKHCLQAPGLYTGYAPKTLPGVYDAVSAGDWETANAQATIAAERIDAAATFLMG 369          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: LAMP1 (protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812TNU8_SYMPI)

HSP 1 Score: 157 bits (396), Expect = 6.130e-37
Identity = 101/240 (42.08%), Postives = 134/240 (55.83%), Query Frame = 1
Query:    1 VFLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDV-----LPFDPPLQAAALQDYVNTLSPRASSSSSGSSDEDAGNVGGSLVLSETDLVPLKDAVEAF-RAAADKGAGSDXXXXXXXVDSAAEAADWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFLT 702
            VF+ HLGI ++D  F    A +YGVYHS+YDSF+W+   GDP F Y  A S+VWGL  LRLA S       LP +  +QA A+Q Y+      A  S +G++              +    PL+ A EAF RAA    A +D              + + EV   N R+ + ER FL++ GLPGR+WFRH LQAPGLY GY A++FPGI +A+S  + +LAQ Q+   A RIE AA  +T
Sbjct:  495 VFIDHLGIPSLDMSFTPGNA-QYGVYHSVYDSFTWMATEGDPNFTYHVAMSQVWGLTTLRLAGSTKSGNLPLPLNLTIQAQAIQGYIA----EAQESLNGTAQR------------KLWFEPLEQASEAFLRAAQHASAEADRLRRLGP-------SAFHEVVAFNNRIGLLERSFLMESGLPGRKWFRHCLQAPGLYTGYGAKTFPGINEAISAEEWDLAQSQIKACAQRIEAAAASIT 710          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: Hypothetical (protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812LK54_9DINO)

HSP 1 Score: 156 bits (395), Expect = 8.550e-37
Identity = 102/248 (41.13%), Postives = 132/248 (53.23%), Query Frame = 1
Query:    1 VFLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSD-----VLPFDPPLQAAALQDYVNTLSPRASSSSSGSSDEDAGNVGGSLVLSETDLVPLKDAVEAFRAAADKGAGSDXXXXXXXVDSAAEAADWL---------EVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFLT 702
            VF+  LGI ++D  F   EA  YGVYHS+YDSF+W+   GDP F Y  A S+VWGL ALRLA SD      LP +  +QA A+  Y+                +   +     VL      PL+ A  AF  AADK +               E AD L         E+   N ++ + ER FL++ GLPGR+WFRH LQAPGLY GYAA++ PGIT+A+S  D +LAQ Q+   A RI  AA+ L+
Sbjct:  499 VFIDRLGIPSLDMSFTPGEA-HYGVYHSVYDSFNWMATEGDPNFTYHVAMSQVWGLTALRLAGSDDRGNLPLPLNLSIQAQAISSYIAEAK------------QTLNHTAPERVLR---FEPLEQATAAFLQAADKSS---------------EEADRLRKLGPPAFDEIVAFNNKIGLLERSFLMESGLPGRKWFRHCLQAPGLYTGYAAKTLPGITEAISAKDWQLAQAQIQACAERIWSAASALS 715          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: M28 (family peptidase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M1WRI4_9BACT)

HSP 1 Score: 153 bits (387), Expect = 2.100e-35
Identity = 97/235 (41.28%), Postives = 130/235 (55.32%), Query Frame = 1
Query:    4 FLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDVLPFDPPLQAAALQDYVNTLSPRASSSSSGSSDEDAGNVGGSLVLSETDLVPLKDAVEAFRAAADKGAGSDXXXXXXXVDSAAEAADWLEVA-DLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFLTG 705
            FL HLGIA  D  F+ D    YGVYHSIYDSF W++ +GDP F Y +AA+++WGL+ LRLA S +LPFD       L+  +  L+  A        DE            E D+ PL+ A++ F AAA              V  A  ++   ++   LN+RL +TER F+  EGLP R W++HV+ APGLY GYAA  FPG+ +AL D +   A+  ++  A  IEDAA  L G
Sbjct:  891 FLQHLGIAAADIRFRGD----YGVYHSIYDSFHWMEKFGDPTFAYHRAAAQIWGLIVLRLADSPILPFDYTEYGRELKRALQGLNLPA--------DEHH----------ELDVAPLRRAIDLFEAAA--------MIVQAEVRRATRSSTTEQMRRSLNDRLMLTERAFIDTEGLPRRPWYKHVVYAPGLYAGYAARVFPGLAEALEDRNWPEARAHINRLARLIEDAALTLVG 1095          
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J998_GUITC)

HSP 1 Score: 152 bits (384), Expect = 2.560e-35
Identity = 98/236 (41.53%), Postives = 133/236 (56.36%), Query Frame = 1
Query:    1 VFLAHLGIATVDFEFQQDEAAEYGVYHSIYDSFSWVDNYGDPGFRYFQAASRVWGLLALRLATSDVLPFDPPLQAAALQDYVNTLSPRASSSSSGSSDEDAGNV---GGSLVLSETDLVPLKDAVEAFRAAADKGAGSDXXXXXXXVDSAAEAADWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAQEQVHVAAARIEDAATFL 699
            VFL HLGI +VD  ++ + +A YGVYHS+YDSFS++    DP FRY    +R WG+  LR + S +LP+DP   A AL  Y+  +    +++       +   V    GS V    DL  L++AV  F  AA   A            + ++      +  LNE +  TER FL   GLPGR+WFRH+LQAPGLYLGY A+ FPGI QA+ DGD +LAQEQ    A  ++ A++ L
Sbjct:  503 VFLDHLGIPSVDLSWRHNTSA-YGVYHSVYDSFSYMVQQVDPDFRYHALCTRFWGVTLLRFSDSALLPYDPKSLAGALNKYLLYVKSMMNATVCRGQCSEIFKVVKQEGSGVF-PLDLSELEEAVSGFTTAASSPALQQAIASCRQEGACSKRL----LLRLNEAMRRTERAFLDPAGLPGRKWFRHILQAPGLYLGYGADMFPGICQAIRDGDAKLAQEQATRCAGVVKHASSVL 732          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9108.17299.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.930e-12070.45protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Glutamate6.170e-4547.33carboxypeptidase n=4 Tax=Monodopsidaceae TaxID=425... [more]
Hypothetical1.690e-4243.83protein n=1 Tax=Amorphochlora amoebiformis TaxID=1... [more]
Hypothetical4.400e-3939.58protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical2.090e-3843.93protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
Hypothetical9.210e-3840.08protein n=1 Tax=Haptolina brevifila TaxID=156173 R... [more]
LAMP16.130e-3742.08protein n=1 Tax=Symbiodinium pilosum TaxID=2952 Re... [more]
Hypothetical8.550e-3741.13protein n=1 Tax=Symbiodinium necroappetens TaxID=1... [more]
M282.100e-3541.28family peptidase n=1 Tax=Acidobacteria bacterium T... [more]
Uncharacterized2.560e-3541.53protein n=1 Tax=Guillardia theta (strain CCMP2712)... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9108contigEcto-sp9_F_contig9108:2389..5146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue4.2e-36
Seed eggNOG ortholog2880.D7FIJ9
KEGG koko:K01301
EggNOG free text desc.exopeptidase activity
EggNOG OGsCOG2234@1,KOG2195@2759
EC3.4.17.21
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpoly(L-malate)-hydrolase precursor
Ec32 orthologEc-27_000030.1
Exons4
Model size1801
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9108.17299.1prot_Ecto-sp9_F_contig9108.17299.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9108 3467..4017 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.295891-UTR-Ecto-sp9_F_contig9108:2388..34661622930981.295891-UTR-Ecto-sp9_F_contig9108:2388..3466Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 2389..3466 -
1692278978.8807032-UTR-Ecto-sp9_F_contig9108:2388..34661692278978.8807032-UTR-Ecto-sp9_F_contig9108:2388..3466Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 2389..3466 -
1622930981.3426518-UTR-Ecto-sp9_F_contig9108:4017..41161622930981.3426518-UTR-Ecto-sp9_F_contig9108:4017..4116Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 4018..4116 -
1692278978.9110723-UTR-Ecto-sp9_F_contig9108:4017..41161692278978.9110723-UTR-Ecto-sp9_F_contig9108:4017..4116Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 4018..4116 -
1622930981.3640437-UTR-Ecto-sp9_F_contig9108:4290..46071622930981.3640437-UTR-Ecto-sp9_F_contig9108:4290..4607Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 4291..4607 -
1692278978.9215505-UTR-Ecto-sp9_F_contig9108:4290..46071692278978.9215505-UTR-Ecto-sp9_F_contig9108:4290..4607Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 4291..4607 -
1622930981.383541-UTR-Ecto-sp9_F_contig9108:5070..51461622930981.383541-UTR-Ecto-sp9_F_contig9108:5070..5146Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 5071..5146 -
1692278978.9305418-UTR-Ecto-sp9_F_contig9108:5070..51461692278978.9305418-UTR-Ecto-sp9_F_contig9108:5070..5146Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 5071..5146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.3128715-CDS-Ecto-sp9_F_contig9108:3466..36081622930981.3128715-CDS-Ecto-sp9_F_contig9108:3466..3608Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9108 3467..3608 -
1692278978.8938432-CDS-Ecto-sp9_F_contig9108:3466..36081692278978.8938432-CDS-Ecto-sp9_F_contig9108:3466..3608Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9108 3467..3608 -
1622930981.3262825-CDS-Ecto-sp9_F_contig9108:3928..40171622930981.3262825-CDS-Ecto-sp9_F_contig9108:3928..4017Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9108 3929..4017 -
1692278978.9024382-CDS-Ecto-sp9_F_contig9108:3928..40171692278978.9024382-CDS-Ecto-sp9_F_contig9108:3928..4017Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9108 3929..4017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9108.17299.1

>prot_Ecto-sp9_F_contig9108.17299.1 ID=prot_Ecto-sp9_F_contig9108.17299.1|Name=mRNA_Ecto-sp9_F_contig9108.17299.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=77bp
MTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLEL
AQEQVHVAAARIEDAATFLTGDEGRR*
back to top

mRNA from alignment at Ecto-sp9_F_contig9108:2389..5146-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9108.17299.1 ID=mRNA_Ecto-sp9_F_contig9108.17299.1|Name=mRNA_Ecto-sp9_F_contig9108.17299.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2758bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9108:2389..5146- (Ectocarpus species9 EcSCA_722f female)
GTGTTTCTGGCTCACCTGGGCATCGCTACCGTGGACTTCGAGTTCCAGCA GGACGAAGCGGCGGAATACGGAGTCTGTGAGTGGAAGATTGTGGCAGAGG TGGAGTGCGTATAATAGTGGTGGCGGGAAGTCGGCTATTCATTTTGTCCC CAGCGCGTGGACCCGCTTCGTGAATCTCCGTACCTTAATGGCTCTCCCGA GGTCCACATAAGCCATGGTGGTGGACGGCAGAGAAATACGAAGCTGCGGC AAAAATACGCCAGGGAGGACGCAAATAACGCGGTTTGCCGTGACACCATC AGAGTGGACAGCCGCCCTATCTGTGTTTGAGAAACAATCACAGACTAACC GTTTCAGAGGCAACCCCTTGACGTCCTTAGAGCGATAGTCGAGAAAAACG TGCTGGACGCATTTGAGTCTGTGTTAGCCTATACACGGAAACATCTACGG TTCCCTCCCTTGGTGTCAGAACCATGGCTACATTGTACATAATATTCACT CTCCTTGTCGTACTCCCGTCCGCCTAACCCGCCCCCCAGACCACTCCATC TACGACAGCTTCAGCTGGGTAGACAACTACGGCGACCCGGGTTTCCGCTA CTTCCAGGCGGCGTCGCGCGTGTGGGGGCTGCTGGCCCTCCGCCTGGCCA CCTCCGACGTCCTCCCTTTCGACCCGCCCCTCCAAGCGGCCGCCCTCCAA GACTACGTCAACACCCTGTCTCCCAGGGCCAGCAGCAGCAGCAGCGGCAG TAGCGACGAAGATGCTGGGAACGTCGGGGGCTCCCTTGTCCTTTCGGAGA CGGACCTGGTCCCGCTAAAGGACGCGGTGGAGGCCTTCCGTGCGGCCGCG GACAAGGTTGGGTCGTGGTCGCAGGAGGCGTTTTCCTCTTCCGGGGCCAC CGGTGGCGTGGTGGCGGAGCCGGGGGGGGGGGGACCCTCGGCAACGGCGG CCGCGGCGGCGGCGAGGGCGGTGGCTCTTCGCGGAGGCGGAGGGGCGGCG GGGGCGGTTGGCGCACCGGATGAGCTTCAGGGGGCCGGGAGCGACGGCGA CGGTGTCGGTGTCGGAGTGGATTCGGCGGCGGAGGCGGCGGATTGGCTGG AGGTGGCGGACCTGAACGAGCGGTTGGCGATGACGGAGAGGAGGTTTTTG GTCGACGAGGGTCTGCCCGGGAGGCAGTGGTTCCGGCACGTGCTGCAGGC CCCGGGACTTTACTTGGGGTGAGTTGGTGGCACACACACGATTCTTTCTT ACTAATTATACAATTCCATCTCTATCTATCTACATGTGTATGGTTTTCGT TTTTCGACGCCGCCGGAAAACCCGTGGGCTCTGCCGTTGAGGGGTGGTGG TTTTTTCCGTAAGACAAGAGTGCGTTGAGGATGGCATGAGATGTTCTGTA TGACCTGGTTCGGGGGTGAAAGGCCATTCATTCATTGCCCAAAACACGTT TGGCGCGTAAATTTCGTTCCCGATTTGACCCGTTTCGATGGCTAAAGCGC CCCCCCCCCCGCCTTTTTCCCTTTCTGTCTCTTGTCAGCTACGCTGCTGA GTCTTTCCCAGGCATCACCCAGGCCCTCAGCGATGGCGACCTAGAGCTCG CGCAAGAACAAGTGCATGTTGCCGCGGCTCGCATCGAGGACGCAGCAACC TTTCTCACGGGAGACGAAGGGAGAAGATGATACATCGGTCGCGACAACGT AACAACGGCAGGTCTTGGGGAGGGGAGGAGAAGAACAGTGGAGGTCCCTG TTTAGTGCCGGTATGTGCCCGTGAAAGTTCACCGGATCCACGGGACACGG GCACTGTTCAAAGTACATAAATAGGCTCGGTAACTCAGGGTGTGCCCGCC GAAAGCACCGGCACTATACCGGGCACCGGCACTATTGAGCCAGAACTAAA CTGGGACCTCTACTGCACTTGAACGGGAGGCGGTAATAGGGGGACAGAGG AAGGAAGACTTTGTGGTGGTGATGCGGTAGGATGACGGCAGTTAGGTGGC TAGAAACCGTAGCCAATTCTTGCGCGCCGTCAGGGTAGCAACATTGCTGT GTGCCTCTTTTTTTTTTGCGGGGTGTGGAAGTTGAATGGTGGCGAGCTGC ACAGGGCGTTTGCTCTTCGCACTCAATGCCGCAATTGCCTCGTTGACCCT TCCTTTTCGGTGTCGGTGTTGTCGTTATCATTCGTTTGTGTTGGCGTTAC ACGTGGTGAAACAATGCGCGATTTTGCAGCCGCCGCGTTGATTGGTCGTC AGTTTTGGCGTGTCGGGGGACAGTTTTGATGGTGTCTTCGTATGTGTCTG TTGTTTTGGATGTTGTCTGTGCTTTGCTTGTGACCGCGAATGATGATTGT CGGGAGCATCGCTCTCTGCGGGCTGGTTGTTCGACTGCTGTACATATGCA TACAGTTTTTTTTTGCCTGTAAGTTATCCTCTTCTCGAGGAAGGTGACCT TGGGTTTGATGGCGTGCCAGACACGACTATCACGCCCTTAGTATGGCGGG TCGAGTATCTGGCACGGGCCACGACGTGGGGTGGAAGTCGTCGAGAGAAG CCCGTTGAGGGGTGCCTCCATGTGTTGGTATTCCCAGTCCTTCTGGATGA ATGCAAGGAGGAAAGTTATCTTCTCGGATGCCAGCTGCTTTTTTTCCTGC GATCTCCTGCACTTCGCTGCACCCGCCCGCTGTGTGTGGTAGACAGCTCG TACGCGGAAGAAACAGAAGATGGTACTAAATACTACTTTGTGTCATGAAA CTTGGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9108:2389..5146-

>mRNA_Ecto-sp9_F_contig9108.17299.1 ID=mRNA_Ecto-sp9_F_contig9108.17299.1|Name=mRNA_Ecto-sp9_F_contig9108.17299.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9108:2389..5146- (Ectocarpus species9 EcSCA_722f female)
ATGACGGAGAGGAGGTTTTTGGTCGACGAGGGTCTGCCCGGGAGGCAGTG
GTTCCGGCACGTGCTGCAGGCCCCGGGACTTTACTTGGGATGACGGAGAG
GAGGTTTTTGGTCGACGAGGGTCTGCCCGGGAGGCAGTGGTTCCGGCACG
TGCTGCAGGCCCCGGGACTTTACTTGGGCTACGCTGCTGAGTCTTTCCCA
GGCATCACCCAGGCCCTCAGCGATGGCGACCTAGAGCTCGCGCAAGAACA
AGTGCATGTTGCCGCGGCTCGCATCGAGGACGCAGCAACCTTTCTCACGG
GAGACGAAGGGAGAAGATGACTACGCTGCTGAGTCTTTCCCAGGCATCAC
CCAGGCCCTCAGCGATGGCGACCTAGAGCTCGCGCAAGAACAAGTGCATG
TTGCCGCGGCTCGCATCGAGGACGCAGCAACCTTTCTCACGGGAGACGAA
GGGAGAAGATGA
back to top