mRNA_Ecto-sp9_F_contig9108.17298.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9108.17298.1
Unique NamemRNA_Ecto-sp9_F_contig9108.17298.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9108.17298.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9108contigEcto-sp9_F_contig9108:1438..2074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size637
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9108.17298.1prot_Ecto-sp9_F_contig9108.17298.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9108 1496..1846 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.22319-UTR-Ecto-sp9_F_contig9108:1437..14951622930981.22319-UTR-Ecto-sp9_F_contig9108:1437..1495Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 1438..1495 +
1692278978.8527505-UTR-Ecto-sp9_F_contig9108:1437..14951692278978.8527505-UTR-Ecto-sp9_F_contig9108:1437..1495Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 1438..1495 +
1622930981.2503757-UTR-Ecto-sp9_F_contig9108:1846..20741622930981.2503757-UTR-Ecto-sp9_F_contig9108:1846..2074Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 1847..2074 +
1692278978.870619-UTR-Ecto-sp9_F_contig9108:1846..20741692278978.870619-UTR-Ecto-sp9_F_contig9108:1846..2074Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9108 1847..2074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930981.2368026-CDS-Ecto-sp9_F_contig9108:1495..18461622930981.2368026-CDS-Ecto-sp9_F_contig9108:1495..1846Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9108 1496..1846 +
1692278978.8614564-CDS-Ecto-sp9_F_contig9108:1495..18461692278978.8614564-CDS-Ecto-sp9_F_contig9108:1495..1846Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9108 1496..1846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9108.17298.1

>prot_Ecto-sp9_F_contig9108.17298.1 ID=prot_Ecto-sp9_F_contig9108.17298.1|Name=mRNA_Ecto-sp9_F_contig9108.17298.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=117bp
MPVSCKASDLSVCVHSCLSNVVRGRSPRRTLVCVLARTLVVVCRRIKLMP
ALDLMMMLFLGWERGGGALFWVVKRQRFISYLVRRVSCRCCVSFFRVVVL
ALLLQHGCVQYVRRVN*
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mRNA from alignment at Ecto-sp9_F_contig9108:1438..2074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9108.17298.1 ID=mRNA_Ecto-sp9_F_contig9108.17298.1|Name=mRNA_Ecto-sp9_F_contig9108.17298.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=637bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9108:1438..2074+ (Ectocarpus species9 EcSCA_722f female)
GTGGCCTACAGGGTGTCTCTGCTTGTACAGCATCGACTGCGCTCACCGGC
TGACCAACATGCCAGTCTCTTGTAAAGCATCTGATTTGTCTGTATGTGTA
CACTCGTGCTTGTCAAATGTCGTACGCGGACGATCCCCACGAAGGACTCT
TGTTTGCGTTCTCGCACGGACTCTTGTTGTGGTGTGTCGTCGAATCAAGC
TGATGCCTGCGCTCGATCTGATGATGATGCTGTTTTTGGGTTGGGAGAGA
GGTGGCGGCGCATTGTTCTGGGTGGTGAAGCGCCAGCGGTTCATCTCTTA
TCTCGTGCGACGTGTGTCGTGTAGGTGTTGTGTGTCTTTTTTTCGTGTGG
TCGTCCTTGCGTTGCTGCTACAGCACGGGTGTGTTCAGTACGTTCGGCGC
GTGAATTAATGGTGTATAGTTTGCATATCCCGTCGAATCGACTCGTGCTT
TCGTTAGGCGTCCGTCCGGGGGGGCAAGTTGTCTGTGTGTGCTCTCCTCA
ACTTCGAGAGCATCGACCGCGACGCTAATCAGCCGACCAAATGAAAACAA
ACGTCAGCTTATACGATAGAGGGACAGAGGTGTGTGTGTTCGTGTTCTTC
GTCTGGGAGCATGTTGGCGACGTGCAACAATGTCAAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9108:1438..2074+

>mRNA_Ecto-sp9_F_contig9108.17298.1 ID=mRNA_Ecto-sp9_F_contig9108.17298.1|Name=mRNA_Ecto-sp9_F_contig9108.17298.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9108:1438..2074+ (Ectocarpus species9 EcSCA_722f female)
ATGCCAGTCTCTTGTAAAGCATCTGATTTGTCTGTATGTGTACACTCGTG
CTTGTCAAATGTCGTACGCGGACGATCCCCACGAAGGACTCTTGTTTGCG
TTCTCGCACGGACTCTTGTTGTGGTGTGTCGTCGAATCAAGCTGATGCCT
GCGCTCGATCTGATGATGATGCTGTTTTTGGGTTGGGAGAGAGGTGGCGG
CGCATTGTTCTGGGTGGTGAAGCGCCAGCGGTTCATCTCTTATCTCGTGC
GACGTGTGTCGTGTAGGTGTTGTGTGTCTTTTTTTCGTGTGGTCGTCCTT
GCGTTGCTGCTACAGCACGGGTGTGTTCAGTACGTTCGGCGCGTGAATTA
AATGCCAGTCTCTTGTAAAGCATCTGATTTGTCTGTATGTGTACACTCGT
GCTTGTCAAATGTCGTACGCGGACGATCCCCACGAAGGACTCTTGTTTGC
GTTCTCGCACGGACTCTTGTTGTGGTGTGTCGTCGAATCAAGCTGATGCC
TGCGCTCGATCTGATGATGATGCTGTTTTTGGGTTGGGAGAGAGGTGGCG
GCGCATTGTTCTGGGTGGTGAAGCGCCAGCGGTTCATCTCTTATCTCGTG
CGACGTGTGTCGTGTAGGTGTTGTGTGTCTTTTTTTCGTGTGGTCGTCCT
TGCGTTGCTGCTACAGCACGGGTGTGTTCAGTACGTTCGGCGCGTGAATT
AA
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